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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6152#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1785 fasta sequence
[CACGCACGCCAAAAAATTTCCCTCTTTTCCTCATTCTCCGCCTCCTTATAATCTCAATTCACCACCACCGTCCTTCTCGCTCTCGCTCTCGCTGCTGCTCCTGCAGGTCCCCCAATCCCGTGGGCGTGGGGGGGGGGGGGGGGTGTTCGGGGTTCTTGCTTTGCTGGGATGGTCGACGCCTAGGTGTTTTGCTTTGCTTTGCTTTTGCTAGGGTTCTTGAGGGGGGGGGGGGGGTGGTGGCCCGGGGCTTCTCCAAACATGGTGCTGCGGCGCTTCGCGTGGCCGTACGGCGGCCAGCGGGCCTCCTTCTGCGGCAGCTTCACCGGGTGGAGGGAGTGCCCCATGGGGCTCGTCGGGGCCGAGTTCCAGGTGGTGTTCGATCTGCCCCCCGGGGTTTATCAGTACCGGTTTTTGGTTGATGGTGTCTGGCGATGTGATGAGACGAAACCTTGTGTACGGGATGAATATGGGTTGATTAGCAATGAAGTTCTTGTGGATAATACACATCCGGTTGTACAGCCAGAAACTTCCATCAGAGTAGTGAGTATGGATGAGGGTACTATACTGACAACAGTATGTATCAAAGTTTCATTTGTAATTTTGTGTATTTTATTTATGCTACCTAATAACTTATAGTCTGTTATGCATTATTTCCAATTATCTCAAGCAGATGCCCCCAGATCAGTTATCTCAAAACTCAGGCGTGCAGATAGCAATTTTCCGCCATCGAGTCTCTGAGATATTATTACATAATACCATATATGATGTTGTTCCTGTTTCTAGCAAGATAGCAGTTTTGGATGCTCGTCTTCCTGTCAAGCAAGCCTTTAAAATCATGCATGATGAGGGTCTTTCTTTGGTTCCTCTTTGGGATGATCAGCAGCAAACCGTAACAGGCATGCTAACCGCATCCGATTTTGTATTAATTTTGAGAAAGCTGCAGAGAAACATTCGAACTCTTGGCCATGAGGAACTTGAAATGCATTCAGTGTCTGCTTGGAAAGAAGCAAAATTGCAGTTTTATGGGGGACCTGATGTTGCTGCCATTCAGAGAAGGCCATTAATTCATGTTAAGGATTCAGATAATTTAAGGGATGTGGCATTGGCTATAATTAGAAATGAAATATCTTCAGTTCCTATCTTTAAGCCCTCAACGGATTCATCAGGGATGCCTTTGCTTGGTCTTGCAACCCTTCCAGGGATTGTGAAATTTATTTGCTCAAAGCTGCAAGAACAGCCTGAAGGGTACTCATTTCTGCAAAACCAGATTGTCAGTATGCCTATTGGTACATGGTCACCACATACTGGCAAGGCAAGCAATAGACAGCTTAGAACTTCGCGACCAAGCACTCCTCTAAATTCATGCCTGGATTTGCTGCTTGAAGATAGAGTAAGCTCAATTCCTATAGTTGACGATAATGGCGCTCTCCTTGATGTCTACTCGCTCAGTGATATCATGGCTCTAGGCAAGAATGATGTCTACACTCGTATTGAGCTTGAACAGGTGACGGTGGAGCATGCCTTGGAGCTGCAATACCAGGTGAATGGCCGAAGACACTGTCATA-CCTGCTTGAGCACTAGTACCTTCCTGGAGGTTTTGGAGCAATTGTCAGCTCCAGGGGTGCGGCGAGTCGTCGTTATTGAACCAAGGAGCAGATTTGTGCAAGGAATAATCTCATTGAGGGACGCATTTACATTTCTCATTGGATAACATTTGTGTAGCCAGCCATTCCATACATGAAAAAGGTAGTTGTATTTGATTGGAACAAAATAAAAGGAAAAAAA]
[+] EMBL AK121122 [CACGCACGCCAAAAAATTTCCCTCTTTTCCTCATTCTCCGCCTCCTTATAATCTCAATTCACCACCACCGTCCTTCTCGCTCTCGCTCTCGCTGCTGCTCCTGCAGGTCCCCCAATCCCGTGGGCGTGGGGGGGGGGGGGGGGTGTTCGGGGTTCTTGCTTTGCTGGGATGGTCGACGCCTAGGTGTTTTGCTTTGCTTTGCTTTTGCTAGGGTTCTTGAGGGGGGGGGGGGGGTGGTGGCCCGGGGCTTCTCCAAACATGGTGCTGCGGCGCTTCGCGTGGCCGTACGGCGGCCAGCGGGCCTCCTTCTGCGGCAGCTTCACCGGGTGGAGGGAGTGCCCCATGGGGCTCGTCGGGGCCGAGTTCCAGGTGGTGTTCGATCTGCCCCCCGGGGTTTATCAGTACCGGTTTTTGGTTGATGGTGTCTGGCGATGTGATGAGACGAAACCTTGTGTACGGGATGAATATGGGTTGATTAGCAATGAAGTTCTTGTGGATAATACACATCCGGTTGTACAGCCAGAAACTTCCATCAGAGTAGTGAGTATGGATGAGGGTACTATACTGACAACAGTATGTATCAAAGTTTCATTTGTAATTTTGTGTATTTTATTTATGCTACCTAATAACTTATAGTCTGTTATGCATTATTTCCAATTATCTCAAGCAGATGCCCCCAGATCAGTTATCTCAAAACTCAGGCGTGCAGATAGCAATTTTCCGCCATCGAGTCTCTGAGATATTATTACATAATACCATATATGATGTTGTTCCTGTTTCTAGCAAGATAGCAGTTTTGGATGCTCGTCTTCCTGTCAAGCAAGCCTTTAAAATCATGCATGATGAGGGTCTTTCTTTGGTTCCTCTTTGGGATGATCAGCAGCAAACCGTAACAGGCATGCTAACCGCATCCGATTTTGTATTAATTTTGAGAAAGCTGCAGAGAAACATTCGAACTCTTGGCCATGAGGAACTTGAAATGCATTCAGTGTCTGCTTGGAAAGAAGCAAAATTGCAGTTTTATGGGGGACCTGATGTTGCTGCCATTCAGAGAAGGCCATTAATTCATGTTAAGGATTCAGATAATTTAAGGGATGTGGCATTGGCTATAATTAGAAATGAAATATCTTCAGTTCCTATCTTTAAGCCCTCAACGGATTCATCAGGGATGCCTTTGCTTGGTCTTGCAACCCTTCCAGGGATTGTGAAATTTATTTGCTCAAAGCTGCAAGAACAGCCTGAAGGGTACTCATTTCTGCAAAACCAGATTGTCAGTATGCCTATTGGTACATGGTCACCACATACTGGCAAGGCAAGCAATAGACAGCTTAGAACTTCGCGACCAAGCACTCCTCTAAATTCATGCCTGGATTTGCTGCTTGAAGATAGAGTAAGCTCAATTCCTATAGTTGACGATAATGGCGCTCTCCTTGATGTCTACTCGCTCAGTGATATCATGGCTCTAGGCAAGAATGATGTCTACACTCGTATTGAGCTTGAACAGGTGACGGTGGAGCATGCCTTGGAGCTGCAATACCAGGTGAATGGCCGAAGACACTGTCATA CCTGCTTGAGCACTAGTACCTTCCTGGAGGTTTTGGAGCAATTGTCAGCTCCAGGGGTGCGGCGAGTCGTCGTTATTGAACCAAGGAGCAGATTTGTGCAAGGAATAATCTCATTGAGGGACGCATTTACATTTCTCATTGGATAACATTTGTGTAGCCAGCCATTCCATACATGAAAAAGGTAGTTGTATTTGATTGGAACAAAATAAAAGGAAAAAAA]
[+] EMBL CF306710 [ TTTTCCGCCATCGAGTCTCTGAGATATTATTACATAATACCATATATGATGTTGTTCCTGTTTCTAGCAAGATAGCAGTTTTGGATGCTCGTCTTCCTGTCAAGCAAGCCTTTAAAATCATGCATGATGAGGGTCTTTCTTTGGTTCCTCTTTGGGATGATCAGCAGCAAACCGTAACAGGCATGCTAACCGCATCCGATTTTGTATTAATTTTGAGAAAGCTGCAGAGAAACATTCGAACTCTTGGCCATGAGGAACTTGAAATGCATTCAGTGTCTGCTTGGAAAGAAGCAAAATTGCAGTTTTATGGGGGACCTGATGTTGCTGCCATTCAGAGAAGGCCATTAATTCATGTTAAGGATTCAGATAATTTAAGGGATGTGGCATTGGCTATAATTAGAAATGAAATATCTTC ]
[+] EMBL CA753258 [ TTCGAACTCTTGGCCATGAGGAACTTGAAATGCATTCAGTGTCTGCTTGGAAAGAAGCAAAATTGCAGTTTTATGGGGGACCTGATGTTGCTGCCATTCAGAGAAGGCCATTAATTCATGTTAAGGATTCAGATAATTTAAGGGATGTGGCATTGGCTATAATTAGAAATGAAATATCTTCAGTTCCTATCTTTAAGCCCTCAACGGATTCATCAGGGATGCCTTTGCTTGGTCTTGCAACCCTTCCAGGGATTGTGAAATTTATTTGCTCAAAGCTGCAAGAACAGCCTGAAGGGTACTCATTTCTGCAAAACCAGATTGTCAGTATGCCTATTGGTACATGGTCACCACATACTGGCAAGGCAAGCAATAGACAGCTTAGAACTTCGCGACCAAGCACTCCTCTAAATTCATGCCTGGATTTGCTGCTTGAAGATAGAGTAAGCTCAATTCCCATAGTTGACGATAATGGCGCTCTCCTTGATGTCTACTCGCTCAGTGATATCATGGCTCTAGGCAAGAATGATGTCTACACTCGTATTGAGCTTGAACAGGTGACGGTGGAGCATGCCTGGGAGCTGCAATACANGGTGAATGGCCGAAAACACTGTCATACCCTGC TGACCACTAGTACCTT CTGGAGGTTNTGGAGCCA TGTTA CTCCA GGGT CGGCAAGT NCTNTA TGAA CAA GAGCA ]
consensusID : consensus_6152#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 592 fasta sequence
[GTTGATGGTGTCTCGGCGATCGTCGATCGACGCACGCACACACCTCGCTCGTACCGCGATCGCACATCATCGGGTCCGATCACCAATGAAGTCCTTCGTCGCGATAATACACATCCGGTCGTACAGCCAGAAACTCCCATCACAGTATGAGCTGGATGACGGTACTATACTGACAACAATGCCCCCAGATCAGTCATCTCAAAACTCACGCGTGCACATAGCAATCCTTCCGCCATCGAGTCTCTGAGATATCATCACATAATACCATATATGATGTTGTCCCTGTNCCTACCAACATATCAGTCTTGGATGCTCGTCTTCCTGTCAAGCAAGCCTGTAAAATCATGCATGATGAGGGTCTTTCTCCGGTTCCTCTCTGCGCATGATCACCACCAAACCGTAACAGGCATGCTAACCGCATCCCATCTCGTATTACTTCGGACAAACCTGCAGAGAAACCTGCGACCTCTNGGCCATGAGGAACTTGAACTGCATCTCAGTGTCTGCTCGGAAACAAGCAANATCGCCACTATCATGGGGGGACCTGATGTCGCAGGCATTCCATANAACGCCACTAAATCCATGTGAACCG]
[+] EMBL BQ164743 [GTTGATGGTGTCTCGGCGATCGTCGATCGACGCACGCACACACCTCGCTCGTACCGCGATCGCACATCATCGGGTCCGATCACCAATGAAGTCCTTCGTCGCGATAATACACATCCGGTCGTACAGCCAGAAACTCCCATCACAGTATGAGCTGGATGACGGTACTATACTGACAACAATGCCCCCAGATCAGTCATCTCAAAACTCACGCGTGCACATAGCAATCCTTCCGCCATCGAGTCTCTGAGATATCATCACATAATACCATATATGATGTTGTCCCTGTNCCTACCAACATATCAGTCTTGGATGCTCGTCTTCCTGTCAAGCAAGCCTGTAAAATCATGCATGATGAGGGTCTTTCTCCGGTTCCTCTCTGCGCATGATCACCACCAAACCGTAACAGGCATGCTAACCGCATCCCATCTCGTATTACTTCGGACAAACCTGCAGAGAAACCTGCGACCTCTNGGCCATGAGGAACTTGAACTGCATCTCAGTGTCTGCTCGGAAACAAGCAANATCGCCACTATCATGGGGGGACCTGATGTCGCAGGCATTCCATANAACGCCACTAAATCCATGTGAACCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6152#0 CACGCACGCCAAAAAATTTCCCTCTTTTCCTCATTCTCCGCCTCCTTATAATCTCAATTC 60
consensus_6152#1 ------------------------------------------------------------
consensus_6152#0 ACCACCACCGTCCTTCTCGCTCTCGCTCTCGCTGCTGCTCCTGCAGGTCCCCCAATCCCG 120
consensus_6152#1 ------------------------------------------------------------
consensus_6152#0 TGGGCGTGGGGGGGGGGGGGGGGTGTTCGGGGTTCTTGCTTTGCTGGGATGGTCGACGCC 180
consensus_6152#1 ------------------------------------------------------------
consensus_6152#0 TAGGTGTTTTGCTTTGCTTTGCTTTTGCTAGGGTTCTTGAGGGGGGGGGGGGGGTGGTGG 240
consensus_6152#1 ------------------------------------------------------------
consensus_6152#0 CCCGGGGCTTCTCCAAACATGGTGCTGCGGCGCTTCGCGTGGCCGTACGGCGGCCAGCGG 300
consensus_6152#1 ------------------------------------------------------------
consensus_6152#0 GCCTCCTTCTGCGGCAGCTTCACCGGGTGGAGGGAGTGCCCCATGGGGCTCGTCGGGGCC 360
consensus_6152#1 ------------------------------------------------------------
consensus_6152#0 GAGTTCCAGGTGGTGTTCGATCTGCCCCCCGGGGTTTATCAGTACCGGTTTTTGGTTGAT 420
consensus_6152#1 ------------------------------------------------------------
consensus_6152#0 GGTGTCTGGCGATGTGATGAGACGAAACCTTGTGTACGGGATGAATATGGGTTGATTAGC 480
consensus_6152#1 ------------------------------------------------------------
consensus_6152#0 AATGAAGTTCTTGTGGATAATACACATCCGGTTGTACAGCCAGAAACTTCCATCAGAGTA 540
consensus_6152#1 ------------GTTGATGGTGTCTCGGCGATCGTCGATC--GACGCACGCACACACCTC 46
** *** * ** * ** * * ** * ** *
consensus_6152#0 GTGAGTATGGATGAGGGTACTATACTGACAACAGTATGTATCAAAGTTTCAT-TTGTAAT 599
consensus_6152#1 GCTCGTACCG-CGATCGCACATCATCGGGTCCGATCACCAATGAAGTCCTTCGTCGCGAT 105
* *** * ** * ** * * * * * **** * * **
consensus_6152#0 TTTGTGTATTTTATTTATGCTACCTAATAACTTATAGTCTGTTATGCATT--ATTTCCA- 656
consensus_6152#1 AATACACATCCGGTC-GTAC-AGCCAGAAACTCCCATCACAGTATGAGCTGGATGACGGT 163
* ** * * * * * * **** * **** * ** *
consensus_6152#0 ATTATCTCAAGCA-GATGCCCCCAGATCAGTTATCTCAAAACTCAGGCGTGCAGATAGCA 715
consensus_6152#1 ACTATACTGACAACAATGCCCCCAGATCAGTCATCTCAAAACTCACGCGTGCACATAGCA 223
* *** * * **************** ************* ******* ******
consensus_6152#0 ATT-TTCCGCCATCGAGTCTCTGAGATATTATTACATAATACCATATATGATGTTGTTCC 774
consensus_6152#1 ATCCTTCCGCCATCGAGTCTCTGAGATATCATCACATAATACCATATATGATGTTGTCCC 283
** ************************* ** ************************ **
consensus_6152#0 TGTTTCTAGCAAGATAGCAGTTTTGGATGCTCGTCTTCCTGTCAAGCAAGCCTTTAAAAT 834
consensus_6152#1 TGTNCCTACCAACATATCAGTCTTGGATGCTCGTCTTCCTGTCAAGCAAGCCTGTAAAAT 343
*** *** *** *** **** ******************************* ******
consensus_6152#0 CATGCATGATGAGGGTCTTTCTTTGGTTCCTCTTTGGG-ATGATCAGCAGCAAACCGTAA 893
consensus_6152#1 CATGCATGATGAGGGTCTTTCTCCGGTTCCTCTCTGCGCATGATCACCACCAAACCGTAA 403
********************** ********* ** * ******* ** **********
consensus_6152#0 CAGGCATGCTAACCGCATCCGATTTTGTATTAATTTTGAGAAAGCTGCAGAGAAACATTC 953
consensus_6152#1 CAGGCATGCTAACCGCATCCCATCTCGTATTACTTCGGACAAACCTGCAGAGAAACCTGC 463
******************** ** * ****** ** ** *** ************ * *
consensus_6152#0 GAACTCTTGGCCATGAGGAACTTGAAATGCAT-TCAGTGTCTGCTTGGAAAGAAGCAAAA 1012
consensus_6152#1 GACCTCTNGGCCATGAGGAACTTGAACTGCATCTCAGTGTCTGCTCGGAAACAAGCAANA 523
** **** ****************** ***** ************ ***** ****** *
consensus_6152#0 TTGCAGTT-TTATGGGGG-ACCTGATGTTGCTGCCATTC-AGAGAAGGCCATTAA-TTCA 1068
consensus_6152#1 TCGCCACTATCATGGGGGGACCTGATGTCGCAGGCATTCCATANAACGCCACTAAATCCA 583
* ** * * ******* ********* ** * ***** * * ** **** *** * **
consensus_6152#0 TGTTAAGGATTCAGATAATTTAAGGGATGTGGCATTGGCTATAATTAGAAATGAAATATC 1128
consensus_6152#1 TGTGAACCG--------------------------------------------------- 592
*** **
consensus_6152#0 TTCAGTTCCTATCTTTAAGCCCTCAACGGATTCATCAGGGATGCCTTTGCTTGGTCTTGC 1188
consensus_6152#1 ------------------------------------------------------------
consensus_6152#0 AACCCTTCCAGGGATTGTGAAATTTATTTGCTCAAAGCTGCAAGAACAGCCTGAAGGGTA 1248
consensus_6152#1 ------------------------------------------------------------
consensus_6152#0 CTCATTTCTGCAAAACCAGATTGTCAGTATGCCTATTGGTACATGGTCACCACATACTGG 1308
consensus_6152#1 ------------------------------------------------------------
consensus_6152#0 CAAGGCAAGCAATAGACAGCTTAGAACTTCGCGACCAAGCACTCCTCTAAATTCATGCCT 1368
consensus_6152#1 ------------------------------------------------------------
consensus_6152#0 GGATTTGCTGCTTGAAGATAGAGTAAGCTCAATTCCTATAGTTGACGATAATGGCGCTCT 1428
consensus_6152#1 ------------------------------------------------------------
consensus_6152#0 CCTTGATGTCTACTCGCTCAGTGATATCATGGCTCTAGGCAAGAATGATGTCTACACTCG 1488
consensus_6152#1 ------------------------------------------------------------
consensus_6152#0 TATTGAGCTTGAACAGGTGACGGTGGAGCATGCCTTGGAGCTGCAATACCAGGTGAATGG 1548
consensus_6152#1 ------------------------------------------------------------
consensus_6152#0 CCGAAGACACTGTCATACCTGCTTGAGCACTAGTACCTTCCTGGAGGTTTTGGAGCAATT 1608
consensus_6152#1 ------------------------------------------------------------
consensus_6152#0 GTCAGCTCCAGGGGTGCGGCGAGTCGTCGTTATTGAACCAAGGAGCAGATTTGTGCAAGG 1668
consensus_6152#1 ------------------------------------------------------------
consensus_6152#0 AATAATCTCATTGAGGGACGCATTTACATTTCTCATTGGATAACATTTGTGTAGCCAGCC 1728
consensus_6152#1 ------------------------------------------------------------
consensus_6152#0 ATTCCATACATGAAAAAGGTAGTTGTATTTGATTGGAACAAAATAAAAGGAAAAAAA 1785
consensus_6152#1 ---------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||