These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6211#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1306 fasta sequence [CCAGGTTAGTGATTCTGGCGTAGCTGGGGATCGGAAGCGTTGGATGGGCTGCCGTCAGCTGTGTCGGATCGAATGCTTCGCCAGAGGCCGTCAGGTTACTGCCGGGTTCGGCATCATAGATTGCCGCCAGTCCCGCCTGGCTAAATCGAGACGGATCCTGCACGATTTTGTAGCTTTTACCGTCGCGCTGGTAATCCTGATTTGCCGTCGCGTTCAGTGGTTGAAACGACGCATCCTGAAGTGATCGCTGCCGCGGTAACTGAACAGCCGCAGGTGATTACCGAGTCTGATGTTGCCACCCGTATAAATCACCGCAAATTCGTCACCGCCGAAGCGGTAGACTTTACCTTTATCTACCGGGATCTGTGATTTAAGGATTTTCACCACTTTCATCAACACTTCATCGCCCAGCAAATGACCGAAGGTGTCGTTAATGTTTTTGAATTTATCGACGTCAAACAGGCACAAATAACCGCCTTTTTCCGGCAGCGCTTTTAAATCTTCGTCAAAGGAAATTATGCCCATTGCTTTGGTCAGGTCGTCCAGGAACGCCGAGTTATACATACTGTAGAGTTTTTTGACATCGGCAGCCGAAAAGAAAAGCCCGCCATCCAGTACGCGTTCAAAATGGTTATTAATGATGGCTTCTTTCTCCACAATACCACGATTAATCACTCTGCGTACCAGATAGAGGCAACTGGCACCCGATATCACTGCCACCAATGCGGCAAAGAAAATAATCAATGTACAAACCCGCAAATAAACATCTTTTTTATACGCAAATACATACAATCCGGTCGGCAAATAGGCGAAGTGCTCCATCGCTTCCGAAACGGTGAAGATGGCGTTTTTAGCATTATATTCATCACCGGTCACCGGTTTACCGTTCTTAAATAGAGAGAACATCAGGTTCTCGCTGTCCATCGCCAGCGATTTTGACAGTAAAGAAAAACGCTCCAGACCAAGCAAAAATATCAGACTACGATTGTGAGTTACCGGATAGAGGTAATAGACGAAGGTTTTACCGTCAAAAGAGATAAACCCTGTATTTTTGACATGTCGATACTTCACAACCTGCATAATATCTGCACAATAATTTTTCTCGAACTCCTTTACCTGAATACATTCGTCACTGGAAATCAGATAAGGACCGACATCGTACAAATAAGAGGGGGAAACCGAGTCGGCGTAAGCTGTGCGCAAACCAACCAACAGCTGTTCCTCCGTGGGATTTAGCGTGTTGATAAGATCAATTGCCACGCTACGCCGATATTCAGCAATATTTGCCACCGCAAAAGCAGTATCA] [-] EMBL CF305727 [CCAGGTTAGTGATTCTGGCGTAGCTGGGGATCGGAAGCGTTGGATGGGCTGCCGTCAGCTGTGTCGGATCGAATGCTTCGCCAGAGGCCGTCAGGTTACTGCCGGGTTCGGCATCATAGATTGCCGCCAGTCCCGCCTGGCTAAATCGAGACGGATCCTGCACGATTTTGTAGCTTTTACCGTCGCGCTGGTAATCCTGATTTGCCGTCGCGTTCAGTGGTTGAAACGACGCATCCTGAAGTGATCGCTGCCGCGGTAACTGAACAGCCGCAGGTGATTACCGAGTCTGATGTTGCCACCCGTATAAATCACCGCAAATTCGTCACCGCCGAAGCGGTAGACTTTACCTTTATCTACCGGGATCTGTGATTTAAGGATTTTCACCACTTTCATCAACACTTCATCGCCCAGCAAATGACCGAAGGTGTCGTTAATGTTTTTGAATTTATCGACGTCAAACAGGCACAAATAACCGCCTTTTTCCGGCAGCGCTTTTAAATCTTCGTCAAAGGAAATTATGCCCATTGCTTTGGTCAGGTCGTCCAGGAACGCCGAGTTATACATACTGTAGAGTTTTTTGACATCGGCAGCCGAAAAGAAAAGCCCGCCATCCAGTACGCGTTCAAAATGGTTATTAATGATGGCTTCTTTCTC ] [+] EMBL CF306965 [ AAGCCCGCCATCCAGTACGCGTTCAAAATGGTTATTAATGATGGCTTCTTTCTCCACAATACCACGATTAATCACTCTGCGTACCAGATAGAGGCAACTGGCACCCGATATCACTGCCACCAATGCGGCAAAGAAAATAATCAATGTACAAACCCGCAAATAAACATCTTTTTTATACGCAAATACATACAATCCGGTCGGCAAATAGGCGAAGTGCTCCATCGCTTCCGAAACGGTGAAGATGGCGTTTTTAGCATTATATTCATCACCGGTCACCGGTTTACCGTTCTTAAATAGAGAGAACATCAGGTTCTCGCTGTCCATCGCCAGCGATTTTGACAGTAAAGAAAAACGCTCCAGACCAAGCAAAAATATCAGACTACGATTGTGAGTTACCGGATAGAGGTAATAGACGAAGGTTTTACCGTCAAAAGAGATAAACCCTGTATTTTTGACATGTCGATACTTCACAACCTGCATAATATCTGCACAATAATTTTTCTCGAACTCCTTTACCTGAATACATTCGTCACTGGAAATCAGATAAGGACCGACATCGTACAAATAAGAGGGGGAAACCGAGTCGGCGTAAGCTGTGCGCAAACCAACCAACAGCTGTTCCTCCGTGGGATTTAGCGTGTTGATAAGATCAATTGCCACGCTACGCCGATATTCAGCAATATTTGCCACCGCAAAAGCAGTATCA] consensusID : consensus_6211#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 853 fasta sequence [ACAACGGGCTGTGGCGCAGGCGTCGGTTCGCTGCCTTCCAGTACACCAGGCGCTAAGGTCGTTGGTGCGCCGAGGAAACCGCTACTGGTTACCGGCGCGCCGGTCGGATCTTCGCTTTTTAGCGTCGAATTACTGACCGGAAGAATGTCACCCTGCGGGCCAGACACTGAACTTGTTCCCGCGCCACCGCTTAAATCGGGAGGTGCAGGCAGGGCGTAAGTCTGTTTGGCGACTGTGGTACAAGCCATACCAGGACCAGAAAGCGAACCATCCTGGGCAACAATAATCGGATCGATACGAACTTTGGTGTTGTTTGACGTGTTAAGACGGTCAGCTGCCGCGCGAGAAAGTGAAATAACGCGGTCGTTGCCGTAAAGGCCGCGATCATTAATGCGCACCACGATCATTCGCCCGTTAGCCAGGTTAGTGATTCTGGCGTAGCTGGGGATCGGAAGCGTTGGATGGGCTGCCGTCAGCTGTGTCGGATCTTTTGCTTCGCCAGAGGCCGTCAGGTTACTGCCGGGTTCGGCATCTTATATTGCCGCCAGTCCCGCCTGGCTAAATCGAGACGGATCCTGCACGATTTTGTAGCTTTTACCGTCGCGCTGGTAATCCTGATTTGCCGTCGCGTTCAGTGGTTCGAAACGCGGGTCCGCCCCGCTAATTTCAACTATAGGGCCGTTACATACCGCAGGCTGCGGTACACTTACCGTCTGTTGCTGACCATCATCGCTTGTACATGCCGCGAGCATTCCTGCCGCGATGCAGATCCCTTGCCACTGCTTACGCATTGCGCACCTCTTACACGCTTTTCGACAACATTTTCCTGTGGGTGTGGATTGACATTACAATC] [+] EMBL AU069761 [ACAACGGGCTGTGGCGCAGGCGTCGGTTCGCTGCCTTCCAGTACACCAGGCGCTAAGGTCGTTGGTGCGCCGAGGAAACCGCTACTGGTTACCGGCGCGCCGGTCGGATCTTCGCTTTTTAGCGTCGAATTACTGACCGGAAGAATGTCACCCTGCGGGCCAGACACTGAACTTGTTCCCGCGCCACCGCTTAAATCGGGAGGTGCAGGCAGGGCGTAAGTCTGTTTGGCGACTGTGGTACAAGCCATACCAGGACCAGAAAGCGAACCATCCTGGGCAACAATAATCGGATCGATACGAACTTTGGTGTTGTTTGACGTGTTAAGACGGTCAGCTGCCGCGCGAGAAAGTGAAATAACGCGGTCGTTGCCGTAAAGGCCGCGATCATTAATGCGCACCACGATCATT ] [+] EMBL CF307221 [ AAATAACGCGGTCGTTGCCGTAAGGGCCGCGATCATTAATGCGCACCACGATCATTCGCCCGTTAGCCAGGTTAGTGATTCTGGCGTAGCTGGGGATCGGAAGCGTTGGATGGGCTGCCGTCAGCTGTGTCGGATCTTTTGCTTCGCCAGAGGCCGTCAGGTTACTGCCGGGTTCGGCATCTTATATTGCCGCCAGTCCCGCCTGGCTAAATCGAGACGGATCCTGCACGATTTTGTAGCTTTTACCGTCGCGCTGGTAATCCTGATTTGCCGTCGCGTTCAGTGGTTCGAAACGCGGGTCCGCCCCGCTAATTTCAACTATAGGGCCGTTACATACCGCAGGCTGCGGTACACTTACCGTCTGTTGCTGACCATCATCGCTTGTACATGCCGCGAGCATTCCTGCCGCGATGCAGATCCCTTGCCACTGCTTACGCATTGCGCACCTCTTACACGCTTTTCGACAACATTTTCCTGTGGGTGTGGATTGACATTACAATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6211#0 CCAGGTTAGTGATTCTGGCGTAGCTGGGGATCGGAAGCGTTGGATGGGCTGCCGTCAGCT 60 consensus_6211#1 ------------------------------------------------------------ consensus_6211#0 GTGTCGGATCGAATGCTTCGCCAGAGGCCGTCAGGTTACTGCCGGGTTCGGCATCATAGA 120 consensus_6211#1 ------------------------------------------------------------ consensus_6211#0 TTGCCGCCAGTCCCGCCTGGCTAAATCGAGACGGATCCTGCACGATTTTGTAGCTTTTAC 180 consensus_6211#1 ------------------------------------------------------------ consensus_6211#0 CGTCGCGCTGGTAATCCTGATTTGCCGTCGCGTTCAGTGGTTGAAACGACGCATCCTGAA 240 consensus_6211#1 ------------------------------------------------------------ consensus_6211#0 GTGATCGCTGCCGCGGTAACTGAACAGCCGCAGGTGATTACCGAGTCTGATGTTGCCACC 300 consensus_6211#1 ------------------------------------------------------------ consensus_6211#0 CGTATAAATCACCGCAAATTCGTCACCGCCGAAGCGGTAGACTTTACCTTTATCTACCGG 360 consensus_6211#1 ---------------ACAACGGGCTGTGGCGCAGGCGTCGGTT----CGCTGCCTTCCAG 41 * * * * * ** ** ** * * * * ** ** * consensus_6211#0 GATCTGTGATTTAAGGATTTTCACCACTTTCATCAACACTTCATCGCCCAGCAAATGACC 420 consensus_6211#1 TACACCAGGCGCTAAGGTCGTTGGTGCGCCGAGGAAACCGCTACTGGTTACCGGCGCGCC 101 * * * * * * * * ** * * * * * ** consensus_6211#0 GAAGGTGTCGTTAATGTTTTTGAATTTATCGACGTCAAACAGGCACAAATAACCGCCTTT 480 consensus_6211#1 GGTCGGATCTTC---GCTTTT-----TAGCGTCGAATTACTGACCGGAAGAATGTCACCC 153 * * ** * * **** ** ** ** ** * * ** ** * consensus_6211#0 TTCCGGCAGCGCTTTTAAATCTTCGTCAAAGGAAATTATGCCCATTGCTTTGGTCAGGTC 540 consensus_6211#1 TGCGGGCCAGACACTGAACTTGTTCCCGCG-----------CCACCGCTTAAATCGGGAG 202 * * *** * * ** * * * *** **** ** ** consensus_6211#0 GTCCAGGAACGCCGAGTTATACATACTGTAGAGTTTTTTGACATCGGCAGCCGAAAAGAA 600 consensus_6211#1 GTGCAGGCAGGGC--GTAAGTCTGTTTGGCGACTGTGGTACAAGCCATACCAGGACCAGA 260 ** **** * * * ** * * ** ** * * * * * * * * * * consensus_6211#0 AAGCCCGCCATCCAGTACGCGTTCAA---AATGGTTATTAATGATGGCTTCTTTCTCCAC 657 consensus_6211#1 AAGCGAACCATCCTGGGCAACAATAATCGGATCGATACGAACTTTGGTGTTGTTTGACGT 320 **** ****** * * ** ** * ** ** *** * ** * consensus_6211#0 AATACCACGATTAATCACTCTGCGTACCAGATAGAGGCAACTGGCACCCGATATCACTGC 717 consensus_6211#1 GTTAAGACGGTCAGCTGCCGCGCG------AGAAAGTGAAATAACGC----GGTCGTTGC 370 ** *** * * * *** * * ** ** * * * ** *** consensus_6211#0 CACCAATGCGGCAAAGAAAATAATCAATGTACAAACCCGCAAATAAACATCTTTTTTATA 777 consensus_6211#1 CGTAAAGGCCGCGA------TCATTAATGCGCA---CCACGATCATTCGCCCGTTAGCCA 421 * ** ** ** * * ** **** ** ** * * * * * ** * consensus_6211#0 CGCAAATACATACAATCCGGTCGGCAAATAGGCGAAGTGCTCCATCGCTTCCGAAACGGT 837 consensus_6211#1 GGTTAGTGATTCTGGCGTAGCTGGGGATCG---GAAGCGTTGGATGGGCTGCCGTCAGCT 478 * * * * * ** * **** * * ** * * * * * consensus_6211#0 GAAGATGGCGTTTTTAGCATTATATTCATCACCGGTCACCGGTTTACCGTTCTTAAATAG 897 consensus_6211#1 GTG--TCGGATCTTTTGC------TTCGCCAGAGGCCGTCAGGTTACTG--CCGGGTTCG 528 * * * * *** ** *** ** ** * * * **** * * * * consensus_6211#0 AGAGAACATCAGGTTCTCGCTGTCCATCGCCAGCGATTTTGACAGTAAAGAAAAACGCTC 957 consensus_6211#1 ---GCATCTTATATTGCCGCCAGTCCCGCCTGGCTA-------AATCGAGACGGATCCTG 578 * * * * ** *** * * ** * * * *** * ** consensus_6211#0 CA-GACCAAGCAAAAATATCAGACTACGATTGTGAGTTACCGGATAGAGGTAATAGACGA 1016 consensus_6211#1 CACGATTTTGTAGCTTTTACCG-TCGCGCTGGTAA--TCCTGATTTGCCGTCGCGTTCAG 635 ** ** * * * * * ** * ** * * * * * * ** * consensus_6211#0 AGGTTTTACCGTCAAAAGAGATAAACCCTGTATTTTTGACATGTCGATACTTCACAACCT 1076 consensus_6211#1 TGGTTCGA-----AACGCGGGTCCGCCCCGCTAATTTCAACTATAGGGCCGTTACATACC 690 **** * ** * * *** * *** * * * * * * *** * consensus_6211#0 GCATAATATCTGCACAATAATT-TTTCTCGAACTCCTTTACCTGAATACATTCGTCACTG 1135 consensus_6211#1 GCAGGCTG-CGGTACACTTACCGTCTGTTGCTGACCATCATC-GCTTGTACATGCCGCGA 748 *** * * * *** * * * * * * ** * * * * * * * * * consensus_6211#0 GAAATCAGATAAGGACCGACATCGTACAAATAAGAGGGGGAAACCGAGTCGGCGTAAGCT 1195 consensus_6211#1 GCATTC---------CTGCCGCGATGCAGATCCCTTGCCACTGCTTACGCATTGCGCACC 799 * * ** * * * * ** ** * * * * * * consensus_6211#0 GTGCGCAAACCAACCAACAGCTGTTCCTCCGTGGGATTTAGCGTGTTGATAAGATCAATT 1255 consensus_6211#1 TCTTACACGCTTTTCGACAAC-ATTTTCCTGTGGG-TGTGGATTGACATTACAATC---- 853 ** * * *** * ** * ***** * * * ** ** *** consensus_6211#0 GCCACGCTACGCCGATATTCAGCAATATTTGCCACCGCAAAAGCAGTATCA 1306 consensus_6211#1 --------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||