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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6222#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1531 fasta sequence
[CCTGCTCAAACACACACACGGCACTCCATTTTTAACAAGTGTTTTCTCTCTGACAAGCCAGCTGCACTTAAGCATTGCTAGAGCGCTAAGCTACCTGCAGCGTAGTGTAGTGTAGTGTACTGCCATGGCAGTGCGCGTGCTTCTTCCTCCTCCTCGCCGGTGGTTCTTGCTTTCTTCTCTGCTGCTGGTGGTGGCGGCGGCTGTTCCCGTCGTCCATGGATACGGCGGCGGCGGTGGGCTGACGGTCGGGTTCTACAAGGAGTCGTGCCCGGAGGCGGAGAAGATAGTGCGCAAGGTGGTGGCGGCGGCTGTCCATGACGACCCGACCACCACCGCGCCGCTGCTCAGGCTTCACTTCCACGATTGTTTCGTCAGGGGGTGTGAAGGATCGGTGCTGATCAACTCGACCAAGAAGAACACGGCGGAGAAGGACGCCAAGCCGAATCACACGCTGGACGCGTACGACGTCATCGACGCAATCAAGGAGAAGCTGGAGCACAAGTGCCCCGCTACCGTCTCCTGCGCCGACATCCTCGCCATTGCTGCCAGAGACGCCGTCTCCTTGGCAACAAAGGCGGTGAGGCAAGGACGGTGGAGCAAGGACGGCAACTTGTACGAGGTGGAGACCGGCCGGCGAGACGGCCGCGTGTCGAGCGCCAAGGAGGCGGTGACCTACTTGCCCGACTCCTTCGATGGAATTCGCAGGCTCATCACCAGGTTTGCTTCCAAGGGCCTCAGCCTCAAGGATCTGGCTGTTCTGTCAGGCGCCCACGCGCTGGGCAACACGCACTGCCCATCGATAGCGAAGCGTCTGCGCAACTTCACGGCGCACCACAACACGGACCCGACCCTGGATGCGACGTACGCCGCGGGGCTGCGGCGGCAGTGCAGGTCGGCCAAGGACAACACCACCCAGCTGGAGATGGTGCCCGGCAGCTCGACCACCTTCGACGCCACCTACTACGGCCTCGTCGCCGAGCGGAAGGGCATGTTCCACTCCGACGAGGCGCTGCTCCGGAACGACGTTACCAGGGGGCTCGTCTACGAGTACATGAGATCGGAGGAGAGCTTCCTCCGGGACTTTGGCGTGTCAATGGTGAACATGGGCAGGGTGGGCGTGCTCACCGGCAGCCAGGGGGAGATCCGGAGGACATGCGCCCTTGTCAACTAGCAAAAGCTGCTCCATGC-TGATTTGGTGCCCTTCGCCGATATCTCTGTGTACCTGATCACCTAGAGACTAATAGGAGTGTCGTCTGGATTAATTAGGGATTATATTATGTCCAAGTCTGAAATCTATGTGAAACAAATTATTGCCGTTGAAACATTTGCTAGAATTGTAAGAAAAAAAATACGCAATGACGGGGCATCATTCTATTTTAGTTTAAAAAAAATATAAATAATTTTTATATTGGTTTTATTTGCTTTTATTTGTTATTACTATTTTTTTTTTTTCATTTCCCCTGTGGGGCCAGGTCCTATTTCTCTTTAGCGCTATTCCGCTCTCTGCCCGTTTTAAACCTGGCGGTGAAAC]
[+] EMBL AK122030 [CCTGCTCAAACACACACACGGCACTCCATTTTTAACAAGTGTTTTCTCTCTGACAAGCCAGCTGCACTTAAGCATTGCTAGAGCGCTAAGCTACCTGCAGCGTAGTGTAGTGTAGTGTACTGCCATGGCAGTGCGCGTGCTTCTTCCTCCTCCTCGCCGGTGGTTCTTGCTTTCTTCTCTGCTGCTGGTGGTGGCGGCGGCTGTTCCCGTCGTCCATGGATACGGCGGCGGCGGTGGGCTGACGGTCGGGTTCTACAAGGAGTCGTGCCCGGAGGCGGAGAAGATAGTGCGCAAGGTGGTGGCGGCGGCTGTCCATGACGACCCGACCACCACCGCGCCGCTGCTCAGGCTTCACTTCCACGATTGTTTCGTCAGGGGGTGTGAAGGATCGGTGCTGATCAACTCGACCAAGAAGAACACGGCGGAGAAGGACGCCAAGCCGAATCACACGCTGGACGCGTACGACGTCATCGACGCAATCAAGGAGAAGCTGGAGCACAAGTGCCCCGCTACCGTCTCCTGCGCCGACATCCTCGCCATTGCTGCCAGAGACGCCGTCTCCTTGGCAACAAAGGCGGTGAGGCAAGGACGGTGGAGCAAGGACGGCAACTTGTACGAGGTGGAGACCGGCCGGCGAGACGGCCGCGTGTCGAGCGCCAAGGAGGCGGTGACCTACTTGCCCGACTCCTTCGATGGAATTCGCAGGCTCATCACCAGGTTTGCTTCCAAGGGCCTCAGCCTCAAGGATCTGGCTGTTCTGTCAGGCGCCCACGCGCTGGGCAACACGCACTGCCCATCGATAGCGAAGCGTCTGCGCAACTTCACGGCGCACCACAACACGGACCCGACCCTGGATGCGACGTACGCCGCGGGGCTGCGGCGGCAGTGCAGGTCGGCCAAGGACAACACCACCCAGCTGGAGATGGTGCCCGGCAGCTCGACCACCTTCGACGCCACCTACTACGGCCTCGTCGCCGAGCGGAAGGGCATGTTCCACTCCGACGAGGCGCTGCTCCGGAACGACGTTACCAGGGGGCTCGTCTACGAGTACATGAGATCGGAGGAGAGCTTCCTCCGGGACTTTGGCGTGTCAATGGTGAACATGGGCAGGGTGGGCGTGCTCACCGGCAGCCAGGGGGAGATCCGGAGGACATGCGCCCTTGTCAACTAGCAAAAGCTGCTCCATGC TGATTTGGTGCCCTTCGCCGATATCTCTGTGTACCTGATCACCTAGAGACTAATAGGAGTGTCGTCTGGATTAATTAGGGATTATATTATGTCCAAGTCTGAAATCTATGTGAAACAAATTATTGCCGTTGAAACATTTGCTAGAATTGTAAGAAAAAAAATACGCAATGACGGGGCATCATTCTATTTTAGTTTAAA ]
[+] EMBL AU032130 [ ACTTAAGCATTGCTAGAGCGCTAAGCTACCTGCAGCGTAGTGTAGTGTAGTGTACTGCCATGGCAGTGCGCGTGCTTCTTCCTCCTCCTCGCCGGTGGTTCTTGCTTTCTTCTCTGCTGCTGGTGGTGGCGGCGGCTGTTCCCGTCGTCCATGGATACGGCGGCGGCGGTGGGCTGACGGTCGGGTTCTACAAGGAGTCGTGCCCGGAGGCGGAGAAGATAGTGCGCAAGGTGGTGGCGGCGGCTGTCCATGACGACCCGACCACCACCGCGCCGCTGCTCAGGCTTCACTTCCACGATTGTTTCGTCAGGGGGTGTGAAGGATCGGTGCTGATCAACTCGACCAAGAAGAACACGGCGGAGAAGGACGCCAAGCCGAATCANACGNTGGACGCGTACGACGTNATCGACGAAATCAAGGAGAA NTTGAGCACAAGTGCCC ]
[+] EMBL BE039859 [ CGTCTCCTTGGCAACAAAGGCGGTGAGGCAAGGACGGTGGAGCAAGGACGGCAACTTGTACGAGGTGGAGACCGGCCGGCGAGACGGCCGCGTGTCGAGCGCCAAGGAGGCGGTGACCTACTTGCCCGACTCCTTCGATGGAATTCGCAGGCTCATCACCAGGTTTGCTTCCAAGGGCCTCAGCCTCAAGGATCTGGCTGTTCTGTCAGGCGCCCACGCGCTGGGCAACACGCACTGCCCGTCGATAGCGAAGCGTCTGCGCAACTTCACGGCGCACCACAACACGGACCCGACCCTGGACGCGACGTACGCCGCGGGGCTGCGGCGGCAGTGCAGGTCGGCCAAGGACAACACCACCCAGCTGGAGATGGTGCCCGGCAGCTCGACCACCTTCGACGCCACCTACTACGGCCTCGTCGCCGAGCGGAAGGGCATGTTCCACTCCGACGAGGCGCTGCTCCGGAACGACGTTACCAGGGGGCTCGTCTACGAGTACATGAGATCGGAGGAGAGCTTCCTCCGGGACTTTGGCGTGTCAATGGTGAACATGGGCAGGGTGGGCGTGCTCACCGGCAGCCAGGGGGAGATCCGGAGGACATGCGCCCTTGTCAACTAGCAAAAGCTGCTCCATGCTTGA TTGGTGCCCTTCGCCGATATTTCTGTGTACCTGATCACCTAGAGACTAATAGGAGTGTCGTCTGGATTAATTAGGGATTATATTATGGCCAAGTCTGAAATTTATGTG AACAAATTATTGGCGTTGAAACTTTTGCTAG ATTGTAAG AAAAAAATACGCAATGACGGGGCATCATTCTATTTTAAAAAATAAAAAATATAAATAATTTTTATATTGGTTTTATTTGCTTTTATTTGTTATTACTATTTTTTTTTTTTCATTTCCCCTGTGGGGCCAGGTCCTATTTCTCTTTAGCGCTATTCCGCTCTCTGCCCGTTTTAAACCTGGCGGTGAAAC]
consensusID : consensus_6222#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 793 fasta sequence
[TGAAGACCGGCCCGGCGAANACGGCCCGCTTTTCGAAGCGCCAAGGAGGCGTTGACCTACTTGCCCCGANTCCTTTCGATGGAATTCGCAGGCTCATCACCAGGTTTGCTTCCAAGGCCTCAGCCTCAAGGATCTGGCTGTTCTGTCAGGCGCCCACGCGCTGGGCAACACGCACTGCCCATCGATAGCGAAGCGTCTGCGCAACTTCACGGCGCACCACAACACGGACCCGACCCTGGATGCGACGTAACGCCGCGGGGCTGCGGCGGCAGTGCAGGTCGGCCAAGGACAACACCACCCAGCTGGAGATGGTGCCCGGCAGCTCGACCACCTTCGACGCCACCTACTACGGCCTCGTCGCCGAGCGGAAGGGCATGTTCCACTCCGACGAGGCGCTGCTCCGGAACGACGTTACCAGGGGGCTCGTCTACGAGTACATGAGATCGGAGGAGAGCTTCCTCCGGGACTTTGGCGTGTCAATGGTGAACATGGGCAGGGTGGGCGTGCTCACCGGCAGCCAGGGGGAGATCCGGAGGACATGCGCCCTTGTCAACTAGCAAAAGCTGCTCCATGCTGATTTGGTGCCCTTCGCCGATATCTCTGTGTACCTGATCACCTAGAGACTAATAGGAGTGTCGTCTGGATTAATTAGGGATTATATTATGTCCAAGTCTGAAATCTATGTGAAACAAATTATTGCCGTTGAAACATTTGCTAGAATTGTAAGAAAAAAAATACGCAATGACGGGGCATCATTCTATTTTAGTTTAAAATTCTATTTTAACAAAAAAAA]
[+] EMBL AU032131 [TGAAGACCGGCCCGGCGAANACGGCCCGCTTTTCGAAGCGCCAAGGAGGCGTTGACCTACTTGCCCCGANTCCTTTCGATGGAATTCGCAGGCTCATCACCAGGTTTGCTTCCAAGGCCTCAGCCTCAAGGATCTGGCTGTTCTGTCAGGCGCCCACGCGCTGGGCAACACGCACTGCCCATCGATAGCGAAGCGTCTGCGCAACTTCACGGCGCACCACAACACGGACCCGACCCTGGATGCGACGTAACGCCGCGGGGCTGCGGCGGCAGTGCAGGTCGGCCAAGGACAACACCACCCAGCTGGAGATGGTGCCCGGCAGCTCGACCACCTTCGACGCCACCTACTACGGCCTCGTCGCCGAGCGGAAGGGCATGTTCCACTCCGACGAGGCGCTGCTCCGGAACGACGTTACCAGGGGGCTCGTCTACGAGTACATGAGATCGGAGGAGAGCTTCCTCCGGGACTTTGGCGTGTCAATGGTGAACATGGGCAGGGTGGGCGTGCTCACCGGCAGCCAGGGGGAGATCCGGAGGACATGCGCCCTTGTCAACTAGCAAAAGCTGCTCCATGCTGATTTGGTGCCCTTCGCCGATATCTCTGTGTACCTGATCACCTAGAGACTAATAGGAGTGTCGTCTGGATTAATTAGGGATTATATTATGTCCAAGTCTGAAATCTATGTGAAACAAATTATTGCCGTTGAAACATTTGCTAGAATTGTAAGAAAAAAAATACGCAATGACGGGGCATCATTCTATTTTAGTTTAAAATTCTATTTTAACAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6222#0 CCTGCTCAAACACACACACGGCACTCCATTTTTAACAAGTGTTTTCTCTCTGACAAGCCA 60
consensus_6222#1 ------------------------------------------------------------
consensus_6222#0 GCTGCACTTAAGCATTGCTAGAGCGCTAAGCTACCTGCAGCGTAGTGTAGTGTAGTGTAC 120
consensus_6222#1 ------------------------------------------------------------
consensus_6222#0 TGCCATGGCAGTGCGCGTGCTTCTTCCTCCTCCTCGCCGGTGGTTCTTGCTTTCTTCTCT 180
consensus_6222#1 ------------------------------------------------------------
consensus_6222#0 GCTGCTGGTGGTGGCGGCGGCTGTTCCCGTCGTCCATGGATACGGCGGCGGCGGTGGGCT 240
consensus_6222#1 ------------------------------------------------------------
consensus_6222#0 GACGGTCGGGTTCTACAAGGAGTCGTGCCCGGAGGCGGAGAAGATAGTGCGCAAGGTGGT 300
consensus_6222#1 ------------------------------------------------------------
consensus_6222#0 GGCGGCGGCTGTCCATGACGACCCGACCACCACCGCGCCGCTGCTCAGGCTTCACTTCCA 360
consensus_6222#1 ------------------------------------------------------------
consensus_6222#0 CGATTGTTTCGTCAGGGGGTGTGAAGGATCGGTGCTGATCAACTCGACCAAGAAGAACAC 420
consensus_6222#1 ------------------------------------------------------------
consensus_6222#0 GGCGGAGAAGGACGCCAAGCCGAATCACACGCTGGACGCGTACGACGTCATCGACGCAAT 480
consensus_6222#1 ------------------------------------------------------------
consensus_6222#0 CAAGGAGAAGCTGGAGCACAAGTGCCCCGCTACCGTCTCCTGCGCCGACATCCTCGCCAT 540
consensus_6222#1 ------------------------------------------------------------
consensus_6222#0 TGCTGCCAGAGACGCCGTCTCCTTGGCAACAAAGGCGGTGAGGCAAGGACGGTGGAGCAA 600
consensus_6222#1 ------------------------------------------------------------
consensus_6222#0 GGACGGCAACTTGTACGAGGTGGAGACCGGCC-GGCGA-GACGGCC-GCGTGTCGA-GCG 656
consensus_6222#1 --------------------TGAAGACCGGCCCGGCGAANACGGCCCGCTTTTCGAAGCG 40
** ********* ***** ****** ** * **** ***
consensus_6222#0 CCAAGGAGGCGGTGACCTACTTGCCC-GACTCCTT-CGATGGAATTCGCAGGCTCATCAC 714
consensus_6222#1 CCAAGGAGGCGTTGACCTACTTGCCCCGANTCCTTTCGATGGAATTCGCAGGCTCATCAC 100
*********** ************** ** ***** ************************
consensus_6222#0 CAGGTTTGCTTCCAAGGGCCTCAGCCTCAAGGATCTGGCTGTTCTGTCAGGCGCCCACGC 774
consensus_6222#1 CAGGTTTGCTTCCAAGG-CCTCAGCCTCAAGGATCTGGCTGTTCTGTCAGGCGCCCACGC 159
***************** ******************************************
consensus_6222#0 GCTGGGCAACACGCACTGCCCATCGATAGCGAAGCGTCTGCGCAACTTCACGGCGCACCA 834
consensus_6222#1 GCTGGGCAACACGCACTGCCCATCGATAGCGAAGCGTCTGCGCAACTTCACGGCGCACCA 219
************************************************************
consensus_6222#0 CAACACGGACCCGACCCTGGATGCGACGTA-CGCCGCGGGGCTGCGGCGGCAGTGCAGGT 893
consensus_6222#1 CAACACGGACCCGACCCTGGATGCGACGTAACGCCGCGGGGCTGCGGCGGCAGTGCAGGT 279
****************************** *****************************
consensus_6222#0 CGGCCAAGGACAACACCACCCAGCTGGAGATGGTGCCCGGCAGCTCGACCACCTTCGACG 953
consensus_6222#1 CGGCCAAGGACAACACCACCCAGCTGGAGATGGTGCCCGGCAGCTCGACCACCTTCGACG 339
************************************************************
consensus_6222#0 CCACCTACTACGGCCTCGTCGCCGAGCGGAAGGGCATGTTCCACTCCGACGAGGCGCTGC 1013
consensus_6222#1 CCACCTACTACGGCCTCGTCGCCGAGCGGAAGGGCATGTTCCACTCCGACGAGGCGCTGC 399
************************************************************
consensus_6222#0 TCCGGAACGACGTTACCAGGGGGCTCGTCTACGAGTACATGAGATCGGAGGAGAGCTTCC 1073
consensus_6222#1 TCCGGAACGACGTTACCAGGGGGCTCGTCTACGAGTACATGAGATCGGAGGAGAGCTTCC 459
************************************************************
consensus_6222#0 TCCGGGACTTTGGCGTGTCAATGGTGAACATGGGCAGGGTGGGCGTGCTCACCGGCAGCC 1133
consensus_6222#1 TCCGGGACTTTGGCGTGTCAATGGTGAACATGGGCAGGGTGGGCGTGCTCACCGGCAGCC 519
************************************************************
consensus_6222#0 AGGGGGAGATCCGGAGGACATGCGCCCTTGTCAACTAGCAAAAGCTGCTCCATGCTGATT 1193
consensus_6222#1 AGGGGGAGATCCGGAGGACATGCGCCCTTGTCAACTAGCAAAAGCTGCTCCATGCTGATT 579
************************************************************
consensus_6222#0 TGGTGCCCTTCGCCGATATCTCTGTGTACCTGATCACCTAGAGACTAATAGGAGTGTCGT 1253
consensus_6222#1 TGGTGCCCTTCGCCGATATCTCTGTGTACCTGATCACCTAGAGACTAATAGGAGTGTCGT 639
************************************************************
consensus_6222#0 CTGGATTAATTAGGGATTATATTATGTCCAAGTCTGAAATCTATGTGAAACAAATTATTG 1313
consensus_6222#1 CTGGATTAATTAGGGATTATATTATGTCCAAGTCTGAAATCTATGTGAAACAAATTATTG 699
************************************************************
consensus_6222#0 CCGTTGAAACATTTGCTAGAATTGTAAGAAAAAAAATACGCAATGACGGGGCATCATTCT 1373
consensus_6222#1 CCGTTGAAACATTTGCTAGAATTGTAAGAAAAAAAATACGCAATGACGGGGCATCATTCT 759
************************************************************
consensus_6222#0 ATTTTAGTTTAAAAAAA-ATATAAATAATTTTTATATTGGTTTTATTTGCTTTTATTTGT 1432
consensus_6222#1 ATTTTAGTTTAAAATTCTATTTTAACAAAAAAAA-------------------------- 793
************** ** * ** ** *
consensus_6222#0 TATTACTATTTTTTTTTTTTCATTTCCCCTGTGGGGCCAGGTCCTATTTCTCTTTAGCGC 1492
consensus_6222#1 ------------------------------------------------------------
consensus_6222#0 TATTCCGCTCTCTGCCCGTTTTAAACCTGGCGGTGAAAC 1531
consensus_6222#1 ---------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||