These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6309#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1666 fasta sequence [GCCTTCTCGTCGGCGTCCGATCCCAAAACCCTCGCCGGCGGCATGGGCGACATCGTCCGGCAAATCCTGGGGTGGTTCCCCGGCCATCCCGCCTCCGGAAACGGCGCCACGCTTTCCGCCGCCGAGGGCTACGGCAGCGAGGACCGCGTCAGCGCGCTCCCCGACGACCTTCTCCGCAACATCGTCGCCCGCCTCCCCGTCAAGGACGCGGCTCGCACCGCGGCGCTCGCCTCCCGCTGGCGGCGCGTCTGGAGCTCCACGCCGCTCGTCCTCCGCGACGCCGATCTCCTCTTCTCCGCCGGCGAGGCCGCGGGCGTCGCGGCCGTCGGCCGCGCCCTCGCCGGTCACCCGGGCCCCTTCCGCGTCGTCCACATCGAGCACTGCATGTTCGCGTTCCACCGTCCCGAGCTCGCCGAGTGGGCGCGCCTCGTCGCCGCCAAGGGCGTGGAGGACCTCGTCTTCGTCAACATTCCCGTCCACTACTTCGATGTGCCCCTCCCCGCCGACATCCTCCGCTGCGCCGCTCTCCGCCGCCTCTTCATCGGCAACTGGAATTTCCCGGCCACCTCTGGCTTCCCCCGCGGCGCCGACGTCTTCCCCCACCTCCTGGAGCTCTACATTTGGAACACCGTCATGAGCGCCAGGGACCTCAACCATCTGCTCGCCTGCAGCCCAGTGCTGCAGAGCCTCGCGCTCGCCCTCAACAGCCATCCCAACCGCGTCCGCCTCTGCAGCCAGAGCCTCCAATGCGTGCTTCTTTTCTTGTCTAAGGCGGAGGAGGTCGCCGTGGTGGATGCCCCACTGCTGCAGCGCCTCGTTCTGTGGAAAATATCAACTTCTTATGATACAGATGATGAGTTGCCAGTAAAGATTAGGCTTGCTTGTGCACCGGAGCTACAGGTCCTGGGCTATCTGGAGCCAAGAGCTCACCAGCTGCAGATTGGCGAAACCATCATCAAGGCTGACACAAAGGTGATTCCAAGCTCCATGGTTCCGAGTATCAAGGTATTGGCCTTGAGGGTGAATTTTTGTGTGCAAGAGGAGATCGCTATGCTGGTCAGCTTCCTCAGATGCTTTCCCAATGTTGAAACACTGCACATCGAGTCTGATATAGATGATGAGTTCACTGGCCAGCCCCATGCCAAGTTCTGGCAGGAGGTCTGTCCTGTTGAATGTATCAATTCACACGTCAAGAAGATTGTCTTTCATGATTTTCATGGGGACAAATGCGAGCTTGAATTCATCGATTTCATCGCCAGGACAGCACAGGAGCTTCAGGCTTTACTGCTTATGTTGACCAGTAAAACGTATGGTCCTGTTGTTGATGTGGATGAAGTGAACAGCCAATTGGGCGTCCTGTCATTTGCATCTGAAGAGTGCATAACGTCGCTGCTTGGGCCTAAAGTGCAGATGGTTCACATATTCCACAGATCATTGGATCTTTCTGTGGATGACCCTTTCCTCTGATGAACTTGAATGCGCTAGCTGGATAAATATTCCTTGATCTTTGCCTTATTATGGAAACAGTTACCCTTATGTTGCAGTGTTGCCTAGTTAGGCACTCTCTTGTTGTTAATGTGCTTCCTCTGAGATAGGGCTAGTAGTTTCAATATTACTAAGTGGCTGTAAGCGTTTAAATTTGTAGTACTATGGTTTACTGCAAGGA] [+] EMBL AK069151 [GCCTTCTCGTCGGCGTCCGATCCCAAAACCCTCGCCGGCGGCATGGGCGACATCGTCCGGCAAATCCTGGGGTGGTTCCCCGGCCATCCCGCCTCCGGAAACGGCGCCACGCTTTCCGCCGCCGAGGGCTACGGCAGCGAGGACCGCGTCAGCGCGCTCCCCGACGACCTTCTCCGCAACATCGTCGCCCGCCTCCCCGTCAAGGACGCGGCTCGCACCGCGGCGCTCGCCTCCCGCTGGCGGCGCGTCTGGAGCTCCACGCCGCTCGTCCTCCGCGACGCCGATCTCCTCTTCTCCGCCGGCGAGGCCGCGGGCGTCGCGGCCGTCGGCCGCGCCCTCGCCGGTCACCCGGGCCCCTTCCGCGTCGTCCACATCGAGCACTGCATGTTCGCGTTCCACCGTCCCGAGCTCGCCGAGTGGGCGCGCCTCGTCGCCGCCAAGGGCGTGGAGGACCTCGTCTTCGTCAACATTCCCGTCCACTACTTCGATGTGCCCCTCCCCGCCGACATCCTCCGCTGCGCCGCTCTCCGCCGCCTCTTCATCGGCAACTGGAATTTCCCGGCCACCTCTGGCTTCCCCCGCGGCGCCGACGTCTTCCCCCACCTCCTGGAGCTCTACATTTGGAACACCGTCATGAGCGCCAGGGACCTCAACCATCTGCTCGCCTGCAGCCCAGTGCTGCAGAGCCTCGCGCTCGCCCTCAACAGCCATCCCAACCGCGTCCGCCTCTGCAGCCAGAGCCTCCAATGCGTGCTTCTTTTCTTGTCTAAGGCGGAGGAGGTCGCCGTGGTGGATGCCCCACTGCTGCAGCGCCTCGTTCTGTGGAAAATATCAACTTCTTATGATACAGATGATGAGTTGCCAGTAAAGATTAGGCTTGCTTGTGCACCGGAGCTACAGGTCCTGGGCTATCTGGAGCCAAGAGCTCACCAGCTGCAGATTGGCGAAACCATCATCAAGGCTGACACAAAGGTGATTCCAAGCTCCATGGTTCCGAGTATCAAGGTATTGGCCTTGAGGGTGAATTTTTGTGTGCAAGAGGAGATCGCTATGCTGGTCAGCTTCCTCAGATGCTTTCCCAATGTTGAAACACTGCACATCGAGTCTGATATAGATGATGAGTTCACTGGCCAGCCCCATGCCAAGTTCTGGCAGGAGGTCTGTCCTGTTGAATGTATCAATTCACACGTCAAGAAGATTGTCTTTCATGATTTTCATGGGGACAAATGCGAGCTTGAATTCATCGATTTCATCGCCAGGACAGCACAGGAGCTTCAGGCTTTACTGCTTATGTTGACCAGTAAAACGTATGGTCCTGTTGTTGATGTGGATGAAGTGAACAGCCAATTGGGCGTCCTGTCATTTGCATCTGAAGAGTGCATAACGTCGCTGCTTGGGCCTAAAGTGCAGATGGTTCACATATTCCACAGATCATTGGATCTTTCTGTGGATGACCCTTTCCTCTGATGAACTTGAATGCGCTAGCTGGATAAATATTCCTTGATCTTTGCCTTATTATGGAAACAGTTACCCTTATGTTGCAGTGTTGCCTAGTTAGGCACTCTCTTGTTGTTAATGTGCTTCCTCTGAGATAGGGCTAGTAGTTTCAATATTACTAAGTGGCTGTAAGCGTTTAAATTTGTAGTACTATGGTTTACTGCAAGGA] consensusID : consensus_6309#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1109 fasta sequence [GATTGCTTCTTTATACTGTACTGACGATGGTAGAACTGTACTACAGTATAGAATTCAGTCTAGGTTCTTCAGACTTGCCGATGGCTTGAACAAGAATAAAAACAGAGACACCTTTCGAACTGAAGAAGCAACCATCAAAATAAAAAGGCTCGTGAATTACAGTATCTTGGAGCTGAAGAAGCAATGTTCAGCTTTCCATCCACACTAGCCGCGGCAACCCCCTAGCCTCCGCCGCCGCCGCGCCCACCTTCTTCCCCGACGCCTAGGACGACGACGACGACAGCGCCACGTCCAAGGCCGCCTCCGGTGGTTCCCCGGCCATCCCGCCTCCGACAACGGCGCCACGCTTTCCGCCGCCGAGGGCTACGACGGCGAGGACCGCGTCAGCGCACTCCCCGACGACCTCCTCGTCGCCCGCCTCCCGTCAAGGACGCGACTCGCACCGCCGCGCTCGCCTTCCGCTGGCGGCGCGTCTGGAGCTCCACGCCGCTCGTCCTCCGCGGCAAGCCCCTTGTGCGCCGGCGTGGAGGGCCCTAGGGGCGGCGAGGTCGACGATGGCCGCCGCCCACGGCGAGGTCCCCGTGGAGGCGGTGGTGGCCAGCGCGTGGAGGAAGCGCGGCGGCGGCGGCGCTGGTCGCCGATCTCCTCCTCTCCGCCGCCGAGGCCGTGGGCGTTGCAGCCGTCGGCCGCGCCCTCGCCGGTCACCCAGACCCCTTCCGCGTCGTGCACCGGTCCGAGCTCGCCGGGTCCTCAACCATCTGCTTGCCTGCAAGCCTCGCGCTCGCGCTCAACAGGCAGAGAGAGAGAGAGAGGAGGAACCGAGGAGCAGCTGACGTGGCATTCTGACATATGGGACCCACGTTGGTTCCATGCTGACTCAGCCGTCACATAGACCAAAACCGGGGTCAAAACCACCGAAGAATCTCGGGTGACCGGTTTTGTATAGTTAAGGGACCCTATATATCTGTTTTTGCGGTTCGATGACGTTTTTTTATCTCACTGACAAGTTGAGGGACCTTGGGTGTACCTGTTCCTTTGTGTTATAAACATATCACAAAACTACAGACTTAGTCATAAATAAATTTATAAAAAAGGACTACATATTTTAG] [-] EMBL AK062616 [GATTGCTTCTTTATACTGTACTGACGATGGTAGAACTGTACTACAGTATAGAATTCAGTCTAGGTTCTTCAGACTTGCCGATGGCTTGAACAAGAATAAAAACAGAGACACCTTTCGAACTGAAGAAGCAACCATCAAAATAAAAAGGCTCGTGAATTACAGTATCTTGGAGCTGAAGAAGCAATGTTCAGCTTTCCATCCACACTAGCCGCGGCAACCCCCTAGCCTCCGCCGCCGCCGCGCCCACCTTCTTCCCCGACGCCTAGGACGACGACGACGACAGCGCCACGTCCAAGGCCGCCTCCGGTGGTTCCCCGGCCATCCCGCCTCCGACAACGGCGCCACGCTTTCCGCCGCCGAGGGCTACGACGGCGAGGACCGCGTCAGCGCACTCCCCGACGACCTCCTCGTCGCCCGCCTCCCGTCAAGGACGCGACTCGCACCGCCGCGCTCGCCTTCCGCTGGCGGCGCGTCTGGAGCTCCACGCCGCTCGTCCTCCGCGGCAAGCCCCTTGTGCGCCGGCGTGGAGGGCCCTAGGGGCGGCGAGGTCGACGATGGCCGCCGCCCACGGCGAGGTCCCCGTGGAGGCGGTGGTGGCCAGCGCGTGGAGGAAGCGCGGCGGCGGCGGCGCTGGTCGCCGATCTCCTCCTCTCCGCCGCCGAGGCCGTGGGCGTTGCAGCCGTCGGCCGCGCCCTCGCCGGTCACCCAGACCCCTTCCGCGTCGTGCACCGGTCCGAGCTCGCCGGGTCCTCAACCATCTGCTTGCCT ] [-] EMBL CA753116 [ CTTGAACGAGAATAAAGACAGAGACACCTTTCGAAGTGAAGAAGCAACCATCAAAATAAAAAGGCTCGTGAATTACAGTATCTTGGAGCTGAAGAAGCAATGTTCAGCTTTCCATCCACACTAGCCGCGGCAACCCCCTAGCCTCCGCCGCCGCCGCGCCCACCTTCTTCCCCGACGCCTAGGACGACGACGACGACAGCGCCACGTCCAAGGCCGCCTCCGGTGGTTCCCCGGCCATCCCGCCTCCGACAACGGCGCCACGCTTTCCGCCGCCGAGGGCTACGACGGCGAGGACCGCGTCAGCGCGCTCCCCGACGACCTCCTCGTCGCCCGCCTCCCGTCAAGGACGCGACTCGCACCGCCGCGCTCGCCTCCCGCTGGCGGCGCGTCTGGAGCTCCACGCCGCTCGTCCTCCGCGGCAAGCCCCTTGTGCGCCGGCGTGGAGGGCCCTAGGGGCGGCGTGGTCGACGATGGCCGCCGCCCACGGCGAGGTCCCCGTGGAGGCGGTGGTG ] [+] EMBL AK063241 [ ATGTTCAGCTTTCCATCCACACTAGCCGCGGCAACCCCCTAGCCTCCGCCGCCGCCGCGCCCACCTTCTTCCCCGACGCCTAGGACGACGACGACGACAGCGCCACGTCCAAGGCCGCCTCCGGTGGTTCCCCGGCCATCCCGCCTCCGACAACGGCGCCACGCTTTCCGCCGCCGAGGGCTACGACGGCGAGGACCGCGTCAGCGCACTCCCCGACGACCTCCTCGTCGCCCGCCTCCCGTCAAGGACGCGACTCGCACCGCCGCGCTCGCCTTCCGCTGGCGGCGCGTCTGGAGCTCCACGCCGCTCGTCCTCCGCGGCAAGCCCCTTGTGCGCCGGCGTGGAGGGCCCTAGGGGCGGCGAGGTCGACGATGGCCGCCGCCCACGGCGAGGTCCCCGTGGAGGCGGTGGTGGCCAGCGCGTGGAGGAAGCGCGGCGGCGGCGGCGCTGGTCGCCGATCTCCTCCTCTCCGCCGCCGAGGCCGTGGGCGTTGCAGCCGTCGGCCGCGCCCTCGCCGGTCACCCAGACCCCTTCCGCGTCGTGCACCGGTCCGAGCTCGCCGGGTCCTCAACCATCTGCTTGCCTGCAAGCCTCGCGCTCGCGCTCAACAGGCAGAGAGAGAGAGAGAGGAGGAACCGAGGAGCAGCTGACGTGGCATTCTGACATATGGGACCCACGTTGGTTCCATGCTGACTCAGCCGTCACATAGACCAAAACCGGGGTCAAAACCACCGAAGAATCTCGGGTGACCGGTTTTGTATAGTTAAGGGACCCTATATATCTGTTTTTGCGGTTCGATGACGTTTTTTTATCTCACTGACAAGTTGAGGGACCTTGGGTGTACCTGTTCCTTTGTGTTATAAACATATCACAAAACTACAGACTTAGTCATAAATAAATTTATAAAAAAGGACTACATATTTTAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6309#0 ----GCCTTCTCGT-CGGCGTC--CGATCCCAAAACCCTCGCCGGCGGCATGGGCGACAT 53 consensus_6309#1 GATTGCTTCTTTATACTGTACTGACGATGGTAGAACTGTA--CTACAGTATAGAATTCA- 57 ** * * * * * **** * *** * * * * ** * ** consensus_6309#0 CGTCCGGCAAATCCTGGGGTGGTTCCCCGGCCATCCCGCCTCCGGAAACGGCGCCACGCT 113 consensus_6309#1 -GTCTAG--GTTCTTCAGACTTGCCGATGGCTTGAACAAGAATAAAAACAGAGACAC-CT 113 *** * ** * * * *** * **** * * *** ** consensus_6309#0 TTCCGCCGCCGAGGGCTACGGCAGCGAGGACCGCGTCAGCGCGCTCCCCGACGACCTTCT 173 consensus_6309#1 TTCGAACTGAAGAAGCAACCATCAAAATAAAAAGGCTCGTGAATTAC---AGTATCTTGG 170 *** * ** ** * * * * * * * * * *** consensus_6309#0 --CCGCAACATCGTCGCCCGCCTCCCCGTCAAGGACGCGGCTCGCACCGCGGCGCTCGCC 231 consensus_6309#1 AGCTGAAGAAGCAATGTTCAGCTTTCCATC---CACACTAGCCGCGGCAACCCCCTAGCC 227 * * * * * * * ** ** ** ** * *** * * ** *** consensus_6309#0 TCCCGCTGGCGGCGCGTCTGGAGCTCCACGCCGCTCGTCCTCCGCGACGCCGATCTCCTC 291 consensus_6309#1 TCC-GCCGCCGCCGCGCCCA-----CCTTCTTCCCCGACGCCTAGGACGACGACGACGAC 281 *** ** * ** **** * ** * ** * * **** *** * * consensus_6309#0 TTCTCCGCCGGCGAGGCCGCGGGCGTCGCGGCCGTCGGCCGCGCCCTCGCCGGTCACCCG 351 consensus_6309#1 AGCGCCACGTCCAAGGCCGCCTCCGGTG-GTTCCCCGGCCATCCCGCCTCCGACAACGGC 340 * ** * * ******* ** * * * ***** ** * *** ** consensus_6309#0 GGCCCCTTCCGCGTCGTCCACATCGAGCACTGC-ATGTTCGCGTTCCACCGTCCCGAGCT 410 consensus_6309#1 GCCACGCTTTCCGCCGCCGAGGGCTACGACGGCGAGGACCGCGTCAGCGCACTCCCCGAC 400 * * * * ** ** * * * * ** ** * * ***** * ** * consensus_6309#0 CGCCGAGTGGGCGCGCCTCGTCGCCGCCAAGGGCGTGGAGGACCTCGTCTTCGTCAACAT 470 consensus_6309#1 GACCTCCTCGTCGC-CCGCCTC-CCGTCAAGGACGCGACTCGCACCGCCGCGCTCGCCTT 458 ** * * *** ** * ** *** ***** ** * * ** * ** * * consensus_6309#0 TCCCGTCCACTACTTCGATGTGCCCCTCCCCGCCGACATCCTCCGCTGCGCCGCTCTCCG 530 consensus_6309#1 CCGCTGGCGGCGCGTCTG-GAGCTCCACGCCGCT--CGTCCTCCGCGGCAAGCCCCTTGT 515 * * * * ** * ** ** * **** * ******** ** * ** consensus_6309#0 CCGCCT-CTTCATCGGCAACTGGAATTTCCCGGCCACCTCTGGCTTCCCCCGCGGCGCCG 589 consensus_6309#1 GCGCCGGCGTGGAGGGCCCTAGGGGCGGCGAGGTCGACGATGGCCGCCGCCC--ACGGCG 573 **** * * *** ** * ** * * **** ** ** ** ** consensus_6309#0 ACGTCTTCCCCCACCTCCTGGAGCTCTACATTTGGAACACCGTCATGAGCGCCAGGGACC 649 consensus_6309#1 AGGTCCCCGTGGAGGCGGTGGTGGCCAGCGCGTGGAGGA--AGCGCG-GCGGCGGCGGCG 630 * *** * * *** * * * **** * * * *** * * * * consensus_6309#0 TCAACCATCTGCTCGCCTGCAGCCCAGTGCTGCAGAGCCTCGCGCTCGCCCTCAACAGCC 709 consensus_6309#1 CTGGTCGCC-GATCTCCTCCTCTCC---GCCGCCGAGGC-CGTGGGCGTT----GCAGCC 681 * * * ** *** * ** ** ** *** * ** * ** ***** consensus_6309#0 ATCCCAACCGCGTCCGCCTCTGCAGCCAGAGCCTCCAATGCGTGCTTCTTTTCTTGTCTA 769 consensus_6309#1 GTC--GGCCGCGCCCTCGCCGGTCACCCAGACCCCTTCCGCG---TCGTGCACCGGTCCG 736 ** ***** ** * * * ** ** * *** * * * *** consensus_6309#0 AGGCGGAGGAGGTCGCCGTGGTGGATGCCCCACTGCTGCAGCGCCTCGTTCTGTGGAAAA 829 consensus_6309#1 AGCTCGCCGGGTCCTCAACCAT--CTGCTTGCCTGCA--AGCCTCGCGCTC-GCGCTCAA 791 ** * * * * * * *** **** *** * ** ** * * ** consensus_6309#0 TATCAACTTCTTATGATACAGATGATGAGTTGCCAGTAAAGATTAGGCTTGCTTGTGCAC 889 consensus_6309#1 CAGGCA--------GAGAGAGAGAGAGAGGAGGAACCGAGGAGCAG-CTGACGTGGCATT 842 * * ** * *** *** * * * ** ** ** * ** consensus_6309#0 CGGAGCTACAGGTCCTGGGCTATCTGGAGCCAAGAGCTCACCAGCTGCAGATTGGCGAAA 949 consensus_6309#1 CTGACATATGGGACCCACGTTGGTTCCATGCTG--ACTCAGCCGTCACATAG-ACCAAAA 899 * ** ** ** ** * * * * * **** * * ** * * *** consensus_6309#0 CCATCATCAAGGCTGACACAAAGGTGATTCCAAGCTCCATGGTTCCGAGTA-TCAAGGTA 1008 consensus_6309#1 CCGGGGTCAAAACCACCGAAGA----ATCTCGGGTGAC-CGGTTTTGTATAGTTAAGG-- 952 ** **** * * * * ** * * * **** * ** * **** consensus_6309#0 TTGGCCTTGAGGGTGAATTTTTGTGTGCAAGAGGAGATCGCTATGCTGGTCAGCTTCCTC 1068 consensus_6309#1 --GACCCTATATATCTGTTTTTGCGGTTCGATGACGTTTTTTTATCTCACTGACAAGTTG 1010 * ** * * ****** * * * * * ** * * consensus_6309#0 AGATGCTTTCCCAATGTTGAAACACTGCACATCGAGTCTGATATAGATGATGAGTTCACT 1128 consensus_6309#1 AGGGACCTTG--GGTGT----ACCTGTTCCTTTGTGTTATAAACATATCACAAAACTACA 1064 ** * ** *** ** * * * ** * * * ** * * ** consensus_6309#0 GGCCAGCCCCATGCCAAGTTCTGGCAGGAGGTCTGTCCTGTTGAATGTATCAATTCACAC 1188 consensus_6309#1 GACTTAGTCATAAATAAATTTATAAAAAAGGACTACATATTTTAG--------------- 1109 * * * ** ** * *** ** ** * consensus_6309#0 GTCAAGAAGATTGTCTTTCATGATTTTCATGGGGACAAATGCGAGCTTGAATTCATCGAT 1248 consensus_6309#1 ------------------------------------------------------------ consensus_6309#0 TTCATCGCCAGGACAGCACAGGAGCTTCAGGCTTTACTGCTTATGTTGACCAGTAAAACG 1308 consensus_6309#1 ------------------------------------------------------------ consensus_6309#0 TATGGTCCTGTTGTTGATGTGGATGAAGTGAACAGCCAATTGGGCGTCCTGTCATTTGCA 1368 consensus_6309#1 ------------------------------------------------------------ consensus_6309#0 TCTGAAGAGTGCATAACGTCGCTGCTTGGGCCTAAAGTGCAGATGGTTCACATATTCCAC 1428 consensus_6309#1 ------------------------------------------------------------ consensus_6309#0 AGATCATTGGATCTTTCTGTGGATGACCCTTTCCTCTGATGAACTTGAATGCGCTAGCTG 1488 consensus_6309#1 ------------------------------------------------------------ consensus_6309#0 GATAAATATTCCTTGATCTTTGCCTTATTATGGAAACAGTTACCCTTATGTTGCAGTGTT 1548 consensus_6309#1 ------------------------------------------------------------ consensus_6309#0 GCCTAGTTAGGCACTCTCTTGTTGTTAATGTGCTTCCTCTGAGATAGGGCTAGTAGTTTC 1608 consensus_6309#1 ------------------------------------------------------------ consensus_6309#0 AATATTACTAAGTGGCTGTAAGCGTTTAAATTTGTAGTACTATGGTTTACTGCAAGGA 1666 consensus_6309#1 ---------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||