These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6339#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1646 fasta sequence [CCCACTAATCCCGGTGCCTTCTTGATCCCACCGATCCCCGTGCTTTCTTCTCTTCGGCATCGCCACGAAGCGGAGGGTGCCATCGCAGCAGCCATCGCCGACGAGCGGCTCACGGTCACTGCGGCCTCGGCAACGTCCGGCGATCGTCGTCGATCCTTACCTTACTCCCTCACGCCCCCTAGCTGTCTCCTCGAGAAGAATCCTGCTTAAGTTGATTTACCTCCGGGTGTTTACGGTCTTTCAAATTGCTAAGCATAATCTTGAACTTTCCAAGAAAAAAAACAGGCCTGCATTAACTAGTGCCAGGGCAGCAATAATGGATTTGTGCGACGACACTCATTTCCCATGGGAGGGGTCCCATACTATTGTTGGCAGCAAGCGGAAAGCTAAGGATTTAATGGCAAAAATCTGAACTTGTTTAATGGAACTTATAAGATGGTGGAAACCACAGTTGATGTTATGATAAGAAAAGGAACAAACATGAGACTCGAAAGCTACGAGTTTTTGAGTGATTTCAAGCATGGCAACGCTGTGGTACTCCTGGACTACACAGAGTCCGGAAACAAGGGGAGTTTCATCGTCACACAAGTTGATGGGTCATTCACTGCCTGGTTTGAAACAGGTGGAAAAGAGCTCTGCTTTGACTCATCTGGTCATATTACTCAGTTATTTAAAGACATGATTGTCGATTTTTACGATCTGACCTGGAGTTTGCACAAGAGGCACTTAGTCATGCAGAATTTTGTAAAGGAAAATATATACGTCAAAATCTTTGATGGCGTACCCAAACTTATGATTCTACTAACTGAAGTTAAATTGGTTGATCAGCTAGGGCCATTCAAACAGGACTGGAGTCATGTCCAAGGCCTCATGACTTGGTGTAAAGAACAATCTGGTTTAAAAATGGACTTTCTTACCAAGAGTTTCTATGATTTCATCGGATCTACCGACTGCACAGTAATCAAGCTGAGAAACTACCCTGATGATTGGGATGAAAAAAAGAAAGGTGATTATTTGCTCACACTCGCAGAAGTAAACCACGGAGTTCTTAAAGATAAGTTGAAGAGTAGGGATGATTTTCATTGGCCGTTTGTGAAGCTGCCTAAGCTGGAGCAGAACTTACCACCAATGTTACAGCAAATTCTTAGTGGGGAGAGACAGATGAAAAGAAAGTTCGACGTGACATTCTTTTGTGATTATATCAACCTCTTGAGAAACTCCTACAAGAAATTCAATGAATTACCAGAAAATGTTAAGGCTTTATGCATAAACCAGGATGGCTTCATTAAACTGATAGATGGGTGGTCTCCTGAGTTTTGGACCAAGATCTACGAGAAAATTGGGTGGCCAGATTATAATATCTGGAAGTGGCCTTGTAAAAAATAGCTTTAGTGCTTTGCATTTGACCAGAACACTGCTTGATCTCAATGATGGCGATGCCGGTGCCCGCGCTGACATTCTCAGGACATATGGTGCTGTTCTGCAGGTCCGATCCTTAGATGGCTCCTGTTAGGAGTTTTTGGTTCTTAGAATTATGTCAGATGCTATCTCGAAACTCTCAAGTAATTTTTTGTCCTCCTGCATGAAGCAAAACTTAGTGTATTGGTTGAAAATCTGGCATGATTGAATGGAGAACTATCGAGATT] [+] EMBL AK064171 [CCCACTAATCCCGGTGCCTTCTTGATCCCACCGATCCCCGTGCTTTCTTCTCTTCGGCATCGCCACGAAGCGGAGGGTGCCATCGCAGCAGCCATCGCCGACGAGCGGCTCACGGTCACTGCGGCCTCGGCAACGTCCGGCGATCGTCGTCGATCCTTACCTTACTCCCTCACGCCCCCTAGCTGTCTCCTCGAGAAGAATCCTGCTTAAGTTGATTTACCTCCGGGTGTTTACGGTCTTTCAAATTGCTAAGCATAATCTTGAACTTTCCAAGAAAAAAAACAGGCCTGCATTAACTAGTGCCAGGGCAGCAATAATGGATTTGTGCGACGACACTCATTTCCCATGGGAGGGGTCCCATACTATTGTTGGCAGCAAGCGGAAAGCTAAGGATTTAATGGCAAAAATCTGAACTTGTTTAATGGAACTTATAAGATGGTGGAAACCACAGTTGATGTTATGATAAGAAAAGGAACAAACATGAGACTCGAAAGCTACGAGTTTTTGAGTGATTTCAAGCATGGCAACGCTGTGGTACTCCTGGACTACACAGAGTCCGGAAACAAGGGGAGTTTCATCGTCACACAAGTTGATGGGTCATTCACTGCCTGGTTTGAAACAGGTGGAAAAGAGCTCTGCTTTGACTCATCTGGTCATATTACTCAGTTATTTAAAGACATGATTGTCGATTTTTACGATCTGACCTGGAGTTTGCACAAGAGGCACTTAGTCATGCAGAATTTTGTAAAGGAAAATATATACGTCAAAATCTTTGATGGCGTACCCAAACTTATGATTCTACTAACTGAAGTTAAATTGGTTGATCAGCTAGGGCCATTCAAACAGGACTGGAGTCATGTCCAAGGCCTCATGACTTGGTGTAAAGAACAATCTGGTTTAAAAATGGACTTTCTTACCAAGAGTTTCTATGATTTCATCGGATCTACCGACTGCACAGTAATCAAGCTGAGAAACTACCCTGATGATTGGGATGAAAAAAAGAAAGGTGATTATTTGCTCACACTCGCAGAAGTAAACCACGGAGTTCTTAAAGATAAGTTGAAGAGTAGGGATGATTTTCATTGGCCGTTTGTGAAGCTGCCTAAGCTGGAGCAGAACTTACCACCAATGTTACAGCAAATTCTTAGTGGGGAGAGACAGATGAAAAGAAAGTTCGACGTGACATTCTTTTGTGATTATATCAACCTCTTGAGAAACTCCTACAAGAAATTCAATGAATTACCAGAAAATGTTAAGGCTTTATGCATAAACCAGGATGGCTTCATTAAACTGATAGATGGGTGGTCTCCTGAGTTTTGGACCAAGATCTACGAGAAAATTGGGTGGCCAGATTATAATATCTGGAAGTGGCCTTGTAAAAAATAGCTTTAGTGCTTTGCATTTGACCAGAACACTGCTTGATCTCAATGATGGCGATGCCGGTGCCCGCGCTGACATTCTCAGGACATATGGTGCTGTTCTGCAGGTCCGATCCTTAGATGGCTCCTGTTAGGAGTTTTTGGTTCTTAGAATTATGTCAGATGCTATCTCGAAACTCTCAAGTAATTTTTTGTCCTCCTGCATGAAGCAAAACTTAGTGTATTGGTTGAAAATCTGGCATGATTGAATGGAGAACTATCGAGATT] [+] EMBL CF292837 [ CATCGCCACGAAGCGGAGGGTGCCATCGCAGCAGCCATCGCCGACGAGCGGCTCACGGTCACTGCGGCCTCGGCAACGTCCGGCGATCGTCGTCGATCCTTACCTTACTCCCTCACGCCCCCTAGCTGTCTCCTCGAGAAGAATCCTGCTTAAGTTGATTTACCTCCGGGTGTTTACGGTCTTTCAAATTGCTAAGCATAATCTTGAACTTTCCAAGAAAAAAAACAGGCCTGCATTAACTAGTGCCAGGGCAGCAATAATGGATTTGTGCGACGACACTCATTTCCCATGGGAGAGGTCCCATACTATTGTTGGCAGCAAGCGGAAAGCTAAGGATTTAATGGCAAAAATCTGAACTTGTCTAATGGAACTTATAAGATGGTGGAAACCACAGTTGATGTTATGATAAGAAAAGGAACAAACATGAGACTCG AAGCCACGAGTTTTTGAGTGATTTCAAGCATGGCAACGCTGTGGTACTCCTGGACTACACAGAGTCCGGAAAC AGGGGAGTTTCATCGTCACACAAGTTGATGGGTCATTCACTGCCTGGTTTGAAACAGGTGGAAAAGAGCTCTGCTTTGACTCATCTGGTCATATTACTCAGTTATTTAAAGACATGATTGTCGATTTT ] consensusID : consensus_6339#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 735 fasta sequence [CTGAGAAACTACCGTGATGATTGGGATGAAAAAAAGAAAGGTGATTATTTGCTCACACTCGCAGAAGTAAACCCCGGAGTTCTTAAAGATAAGTTGAAGAGTAGGGATGATTTTCACTGGCCGTTTGTGAAGCTGCCTAAGTTGGAGCAGAACTTACCACCAATGTTACAGCAAATTCTTAGTGGGGAGAGACAGATGAAAAGAAAGTTCGACGTGACATTCTTTTGTGATTATATCAACCTCTTGAGAAACTCCTACAAGAAATTCAATGAATTACCAGAAAATGTTAAGGCTTTATGCATAAACCAGGATGGCTTCATTAAACTGATAGATGGGTGGTCTCATGAGTTTTGGACCAAGATCTACGAGAAAATTGGGTGGCCAGATTATAATATCTGGAAGTGGCCTTGTAAAAAATAGCTTTAGTGCTTTGCATTTGACCAGTGAGTACTGCATTAATTCTTAATGAACACTGCTTGATCTCAATGATGGCGATGCCGGTGCCCGCGCTGACATTCTCAGGACATATGGTGCTGTTCTGCAGGTCCGATCCCTAGATGGCTCCTGTTAGGAGTTTTTGGTTCTTAGAATTATGTTAGATGCTATCTCGAAACTCTCAAGTAATTTTTTGTCCTCACTGCACGAAGCAAACCTTAGTGTATTGGGTGAAAATCTGGCATGATTGAATGGAGATCTATCGAGAACGGTACGGAAAATGAGGGGGGGCCCGGACCC] [-] EMBL CB673747 [CTGAGAAACTACCGTGATGATTGGGATGAAAAAAAGAAAGGTGATTATTTGCTCACACTCGCAGAAGTAAACCCCGGAGTTCTTAAAGATAAGTTGAAGAGTAGGGATGATTTTCACTGGCCGTTTGTGAAGCTGCCTAAGTTGGAGCAGAACTTACCACCAATGTTACAGCAAATTCTTAGTGGGGAGAGACAGATGAAAAGAAAGTTCGACGTGACATTCTTTTGTGATTATATCAACCTCTTGAGAAACTCCTACAAGAAATTCAATGAATTACCAGAAAATGTTAAGGCTTTATGCATAAACCAGGATGGCTTCATTAAACTGATAGATGGGTGGTCTCATGAGTTTTGGACCAAGATCTACGAGAAAATTGGGTGGCCAGATTATAATATCTGGAAGTGGCCTTGTAAAAAATAGCTTTAGTGCTTTGCATTTGACCAGTGAGTACTGCATTAATTCTTAATGAACACTGCTTGATCTCAATGATGGCGATGCCGGTGCCCGCGCTGACATTCTCAGGACATATGGTGCTGTTCTGCAGGTCCGATCCCTAGATGGCTCCTGTTAGGAGTTTTTGGTTCTTAGAATTATGTTAGATGCTATCTCGAAACTCTCAAGTAATTTTTTGTCCTCACTGCACGAAGCAAACCTTAGTGTATTGGGTGAAAATCTGGCATGATTGAATGGAGATCTATCGAGAACGGTACGGAAAATGAGGGGGGGCCCGGACCC] consensusID : consensus_6339#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 399 fasta sequence [ACCAAGATCTACGAGAAAATTGGGTGGCCAGATTATAATATCTGGAAGTGGCCTTGTAAAAAATAGCTTTAGTGCTTTGCATTTGACCAGTCCTTGATCTAAAAAAAAAGTTCAATGGGCTTTGGAAAAATCTAATACTTTCTCCGTTTCACAATGAACACTGCTTGATCTCAATGATGGCGATGCCGGTGCCCGCGCTGACATTCTCAGGACATATGGTGCTATTCTGCAGGTCCGATCCTAAAATGGCTCCTGTTAGGAGTTTTTGGTTCTTAGAATTATGTTAGATGCTATCTCGAAACTCTCAAGTAATTTTTTGTCCTCCTGCATGAAGCAAAACTTAGTGTATTGGTTGAAAATCTGGCATGATTGAATGAAAAACTATCGAGATTCAAAAAA] [-] EMBL CF292838 [ACCAAGATCTACGAGAAAATTGGGTGGCCAGATTATAATATCTGGAAGTGGCCTTGTAAAAAATAGCTTTAGTGCTTTGCATTTGACCAGTCCTTGATCTAAAAAAAAAGTTCAATGGGCTTTGGAAAAATCTAATACTTTCTCCGTTTCACAATGAACACTGCTTGATCTCAATGATGGCGATGCCGGTGCCCGCGCTGACATTCTCAGGACATATGGTGCTATTCTGCAGGTCCGATCCTAAAATGGCTCCTGTTAGGAGTTTTTGGTTCTTAGAATTATGTTAGATGCTATCTCGAAACTCTCAAGTAATTTTTTGTCCTCCTGCATGAAGCAAAACTTAGTGTATTGGTTGAAAATCTGGCATGATTGAATGAAAAACTATCGAGATTCAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6339#0 CCCACTAATCCCGGTGCCTTCTTGATCCCACCGATCCCCGTGCTTTCTTCTCTTCGGCAT 60 consensus_6339#1 ------------------------------------------------------------ consensus_6339#2 ------------------------------------------------------------ consensus_6339#0 CGCCACGAAGCGGAGGGTGCCATCGCAGCAGCCATCGCCGACGAGCGGCTCACGGTCACT 120 consensus_6339#1 ------------------------------------------------------------ consensus_6339#2 ------------------------------------------------------------ consensus_6339#0 GCGGCCTCGGCAACGTCCGGCGATCGTCGTCGATCCTTACCTTACTCCCTCACGCCCCCT 180 consensus_6339#1 ------------------------------------------------------------ consensus_6339#2 ------------------------------------------------------------ consensus_6339#0 AGCTGTCTCCTCGAGAAGAATCCTGCTTAAGTTGATTTACCTCCGGGTGTTTACGGTCTT 240 consensus_6339#1 ------------------------------------------------------------ consensus_6339#2 ------------------------------------------------------------ consensus_6339#0 TCAAATTGCTAAGCATAATCTTGAACTTTCCAAGAAAAAAAACAGGCCTGCATTAACTAG 300 consensus_6339#1 ------------------------------------------------------------ consensus_6339#2 ------------------------------------------------------------ consensus_6339#0 TGCCAGGGCAGCAATAATGGATTTGTGCGACGACACTCATTTCCCATGGGAGGGGTCCCA 360 consensus_6339#1 ------------------------------------------------------------ consensus_6339#2 ------------------------------------------------------------ consensus_6339#0 TACTATTGTTGGCAGCAAGCGGAAAGCTAAGGATTTAATGGCAAAAATCTGAACTTGTTT 420 consensus_6339#1 ------------------------------------------------------------ consensus_6339#2 ------------------------------------------------------------ consensus_6339#0 AATGGAACTTATAAGATGGTGGAAACCACAGTTGATGTTATGATAAGAAAAGGAACAAAC 480 consensus_6339#1 ------------------------------------------------------------ consensus_6339#2 ------------------------------------------------------------ consensus_6339#0 ATGAGACTCGAAAGCTACGAGTTTTTGAGTGATTTCAAGCATGGCAACGCTGTGGTACTC 540 consensus_6339#1 ------------------------------------------------------------ consensus_6339#2 ------------------------------------------------------------ consensus_6339#0 CTGGACTACACAGAGTCCGGAAACAAGGGGAGTTTCATCGTCACACAAGTTGATGGGTCA 600 consensus_6339#1 ------------------------------------------------------------ consensus_6339#2 ------------------------------------------------------------ consensus_6339#0 TTCACTGCCTGGTTTGAAACAGGTGGAAAAGAGCTCTGCTTTGACTCATCTGGTCATATT 660 consensus_6339#1 ------------------------------------------------------------ consensus_6339#2 ------------------------------------------------------------ consensus_6339#0 ACTCAGTTATTTAAAGACATGATTGTCGATTTTTACGATCTGACCTGGAGTTTGCACAAG 720 consensus_6339#1 ------------------------------------------------------------ consensus_6339#2 ------------------------------------------------------------ consensus_6339#0 AGGCACTTAGTCATGCAGAATTTTGTAAAGGAAAATATATACGTCAAAATCTTTGATGGC 780 consensus_6339#1 ------------------------------------------------------------ consensus_6339#2 ------------------------------------------------------------ consensus_6339#0 GTACCCAAACTTATGATTCTACTAACTGAAGTTAAATTGGTTGATCAGCTAGGGCCATTC 840 consensus_6339#1 ------------------------------------------------------------ consensus_6339#2 ------------------------------------------------------------ consensus_6339#0 AAACAGGACTGGAGTCATGTCCAAGGCCTCATGACTTGGTGTAAAGAACAATCTGGTTTA 900 consensus_6339#1 ------------------------------------------------------------ consensus_6339#2 ------------------------------------------------------------ consensus_6339#0 AAAATGGACTTTCTTACCAAGAGTTTCTATGATTTCATCGGATCTACCGACTGCACAGTA 960 consensus_6339#1 ------------------------------------------------------------ consensus_6339#2 ------------------------------------------------------------ consensus_6339#0 ATCAAGCTGAGAAACTACCCTGATGATTGGGATGAAAAAAAGAAAGGTGATTATTTGCTC 1020 consensus_6339#1 ------CTGAGAAACTACCGTGATGATTGGGATGAAAAAAAGAAAGGTGATTATTTGCTC 54 consensus_6339#2 ------------------------------------------------------------ consensus_6339#0 ACACTCGCAGAAGTAAACCACGGAGTTCTTAAAGATAAGTTGAAGAGTAGGGATGATTTT 1080 consensus_6339#1 ACACTCGCAGAAGTAAACCCCGGAGTTCTTAAAGATAAGTTGAAGAGTAGGGATGATTTT 114 consensus_6339#2 ------------------------------------------------------------ consensus_6339#0 CATTGGCCGTTTGTGAAGCTGCCTAAGCTGGAGCAGAACTTACCACCAATGTTACAGCAA 1140 consensus_6339#1 CACTGGCCGTTTGTGAAGCTGCCTAAGTTGGAGCAGAACTTACCACCAATGTTACAGCAA 174 consensus_6339#2 ------------------------------------------------------------ consensus_6339#0 ATTCTTAGTGGGGAGAGACAGATGAAAAGAAAGTTCGACGTGACATTCTTTTGTGATTAT 1200 consensus_6339#1 ATTCTTAGTGGGGAGAGACAGATGAAAAGAAAGTTCGACGTGACATTCTTTTGTGATTAT 234 consensus_6339#2 ------------------------------------------------------------ consensus_6339#0 ATCAACCTCTTGAGAAACTCCTACAAGAAATTCAATGAATTACCAGAAAATGTTAAGGCT 1260 consensus_6339#1 ATCAACCTCTTGAGAAACTCCTACAAGAAATTCAATGAATTACCAGAAAATGTTAAGGCT 294 consensus_6339#2 ------------------------------------------------------------ consensus_6339#0 TTATGCATAAACCAGGATGGCTTCATTAAACTGATAGATGGGTGGTCTCCTGAGTTTTGG 1320 consensus_6339#1 TTATGCATAAACCAGGATGGCTTCATTAAACTGATAGATGGGTGGTCTCATGAGTTTTGG 354 consensus_6339#2 ------------------------------------------------------------ consensus_6339#0 ACCAAGATCTACGAGAAAATTGGGTGGCCAGATTATAATATCTGGAAGTGGCCTTGTAAA 1380 consensus_6339#1 ACCAAGATCTACGAGAAAATTGGGTGGCCAGATTATAATATCTGGAAGTGGCCTTGTAAA 414 consensus_6339#2 ACCAAGATCTACGAGAAAATTGGGTGGCCAGATTATAATATCTGGAAGTGGCCTTGTAAA 60 ************************************************************ consensus_6339#0 AAATAGCTTTAGTGCTTTGCATTTGACCAG------------------------------ 1410 consensus_6339#1 AAATAGCTTTAGTGCTTTGCATTTGACCAGTGAGTACTGCATTAA--------------- 459 consensus_6339#2 AAATAGCTTTAGTGCTTTGCATTTGACCAGTCCTTGATCTAAAAAAAAAGTTCAATGGGC 120 ****************************** consensus_6339#0 ------------------------------------AACACTGCTTGATCTCAATGATGG 1434 consensus_6339#1 ---------------------------TTCTTAATGAACACTGCTTGATCTCAATGATGG 492 consensus_6339#2 TTTGGAAAAATCTAATACTTTCTCCGTTTCACAATGAACACTGCTTGATCTCAATGATGG 180 ************************ consensus_6339#0 CGATGCCGGTGCCCGCGCTGACATTCTCAGGACATATGGTGCTGTTCTGCAGGTCCGATC 1494 consensus_6339#1 CGATGCCGGTGCCCGCGCTGACATTCTCAGGACATATGGTGCTGTTCTGCAGGTCCGATC 552 consensus_6339#2 CGATGCCGGTGCCCGCGCTGACATTCTCAGGACATATGGTGCTATTCTGCAGGTCCGATC 240 ******************************************* **************** consensus_6339#0 CTTAGATGGCTCCTGTTAGGAGTTTTTGGTTCTTAGAATTATGTCAGATGCTATCTCGAA 1554 consensus_6339#1 CCTAGATGGCTCCTGTTAGGAGTTTTTGGTTCTTAGAATTATGTTAGATGCTATCTCGAA 612 consensus_6339#2 CTAAAATGGCTCCTGTTAGGAGTTTTTGGTTCTTAGAATTATGTTAGATGCTATCTCGAA 300 * * *************************************** *************** consensus_6339#0 ACTCTCAAGTAATTTTTTGTCCTC-CTGCATGAAGCAAAACTTAGTGTATTGGTTGAAAA 1613 consensus_6339#1 ACTCTCAAGTAATTTTTTGTCCTCACTGCACGAAGCAAACCTTAGTGTATTGGGTGAAAA 672 consensus_6339#2 ACTCTCAAGTAATTTTTTGTCCTC-CTGCATGAAGCAAAACTTAGTGTATTGGTTGAAAA 359 ************************ ***** ******** ************* ****** consensus_6339#0 TCTGGCATGATTGAATGGAGAACTATCGAGATT--------------------------- 1646 consensus_6339#1 TCTGGCATGATTGAATGGAGATCTATCGAGAACGGTACGGAAAATGAGGGGGGGCCCGGA 732 consensus_6339#2 TCTGGCATGATTGAATGAAAAACTATCGAGATTCAAAAAA-------------------- 399 ***************** * * ********* consensus_6339#0 --- consensus_6339#1 CCC 735 consensus_6339#2 --- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||