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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6415#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1169 fasta sequence
[GCTCTCCGCTTCGCCGGCGCCGCTCCCCCCACCCCCGCGCGCGGAAGATTGTCCTCGTGGCGGAGCGCGTGCTGCGGCTGTTGTGCTGCACAGCCGCCGGGCACCACATTTGCAGCAGCGCCGCCTCCGCCGCACTCGTCCATCGCCGGAGCTTCCGCTAGGGTTTCGGCGAGCCGGGGGGAGGGGGGGGGGGGTGAGGTGGGCCGTCCGCCGCCGCCTCCGCGGAGTTCCTGCCTGACGACTGGATCACGCAGACTCTAACCAAACACCACCCGACTGATTTCGCTCGCCTCTTCCTCATCCCCATCAGCCATGATCCAGGCCGTGATGGTGATGAGCACGCAGGGCAAGCCGCGCCTCCTCAAGTTCTACAGCTACCAGCCCCCCGAGAAGCATCAGGACCTCGTCCGCGGCGTCTTCCAGTTGTTGTCTGCAAGGCCGGACAGTGTCAGCAATTTCGTCAAGGTTGATGCAATCTTTGGACCGGGAGCGAAATTGGTCTACAAACATTTGGCCACATTGTACTTTGTTTTTGTCTTTGATAGCTCTGAAAATGAACTTGCGGTGCTTGATCTTGTACAAGTTTTTGTTGAAACATTGGACAGATGCTTCAAGAATGTGTGTGAGCTTGACATCGTATTTAACTTCAACAAGCTGCATACAATTTTAGATGAAATGATACTTGGGGGACAAGTGATTGAAACAAGTTCAGAGCAAATAATGAGATCTGTCGAAGAGATTGCAAGGCTGGAGAAACAGTCAAACACAACCAGCCTCATACCGAAGTCGATTTCAGAGCGTTTCAGCCGTTGAGCCGTGAGAGCTTCACTCATGTTATGGACAGAAACTTTGAATGCGTGAGCAGAAGAAATCAGATTGCATTTTTCTCCAGTCGCGTTGCGATTCTCTCAAGTCGCGAGCATCTACCATTTGACATGAATATGAGAGCTTGTAGCCATCGTGAATATCTCTGTGTATCCCGCATGAAATTGAATATGTGACCTGAAACGTGAATTCTTCAGTACTATCTGGTTTGCTTGCCGATTGCCAGTTGAGGCATCGTGTCTCCTAGACAAGGAAAATCATACTAGCCTGTTTCTCCTTCGGCTGATGATATCTGTGCTGTTTTTGATAGAATGTTGTTCTTGGAAAATTGCGAAGGCGTTGTG]
[+] EMBL AK103703 [GCTCTCCGCTTCGCCGGCGCCGCTCCCCCCACCCCCGCGCGCGGAAGATTGTCCTCGTGGCGGAGCGCGTGCTGCGGCTGTTGTGCTGCACAGCCGCCGGGCACCACATTTGCAGCAGCGCCGCCTCCGCCGCACTCGTCCATCGCCGGAGCTTCCGCTAGGGTTTCGGCGAGCCGGGGGGAGGGGGGGGGGGGTGAGGTGGGCCGTCCGCCGCCGCCTCCGCGGAGTTCCTGCCTGACGACTGGATCACGCAGACTCTAACCAAACACCACCCGACTGATTTCGCTCGCCTCTTCCTCATCCCCATCAGCCATGATCCAGGCCGTGATGGTGATGAGCACGCAGGGCAAGCCGCGCCTCCTCAAGTTCTACAGCTACCAGCCCCCCGAGAAGCATCAGGACCTCGTCCGCGGCGTCTTCCAGTTGTTGTCTGCAAGGCCGGACAGTGTCAGCAATTTCGTCAAGGTTGATGCAATCTTTGGACCGGGAGCGAAATTGGTCTACAAACATTTGGCCACATTGTACTTTGTTTTTGTCTTTGATAGCTCTGAAAATGAACTTGCGGTGCTTGATCTTGTACAAGTTTTTGTTGAAACATTGGACAGATGCTTCAAGAATGTGTGTGAGCTTGACATCGTATTTAACTTCAACAAGCTGCATACAATTTTAGATGAAATGATACTTGGGGGACAAGTGATTGAAACAAGTTCAGAGCAAATAATGAGATCTGTCGAAGAGATTGCAAGGCTGGAGAAACAGTCAAACACAACCAGCCTCATACCGAAGTCGATTTCAGAGCGTTTCAGCCGTTGAGCCGTGAGAGCTTCACTCATGTTATGGACAGAAACTTTGAATGCGTGAGCAGAAGAAATCAGATTGCATTTTTCTCCAGTCGCGTTGCGATTCTCTCAAGTCGCGAGCATCTACCATTTGACATGAATATGAGAGCTTGTAGCCATCGTGAATATCTCTGTGTATCCCGCATGAAATTGAATATGTGACCTGAAACGTGAATTCTTCAGTACTATCTGGTTTGCTTGCCGATTGCCAGTTGAGGCATCGTGTCTCCTAGACAAGGAAAATCATACTAGCCTGTTTCTCCTTCGGCTGATGATATCTGTGCTGTTTTTGATAGAATGTTGTTCTTGGAAAATTGCGAAGGCGTTGTG]
[+] EMBL C71671 [ GATGCAATCTTTGGACCGGGAGCGAAATTGGTCTACAAACATTTGGCCACATTGTACTTTGTTTTTGTCTTTGATAGCTCTGAAAATGAACTTGCGGTGCTTGATCTTGTACAAGTTTTTNTTGAAACATTGGACAGATGCTTCAAGAATGTGTGTGAGCTTGACATCGTATTTAACTTCAACAAGCTGCATACAATTTTAGATGAAATGATACTTGGGGGACAAGTGATTGAAACAAGTTCAGAGCAAATAATGAGATCTGTCGAAGAGATTGCAAGGCTGGAGAAACAGTCAAACACAACCAGCCTCATACCGAAGTCGATTTCAGAGCGTTTCAGCCGTTGAGCCGTGAGAGCTTCACTCATGTTATGGACAGAAACTTTGAATGCGTGNGGA NTGAAATCAGATTGCA TTTTCTC ]
consensusID : consensus_6415#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 600 fasta sequence
[CCAGAGGCCCAGACAAGGGGGTGCTTGATTTCGTACAAGTTTTTGTTGAAACATTGGACAGATGCTTCAAGAATGTGTGTGAGCTTGACATCGTATTTAACTTCAACAAGCTGCATACAATNTTAGGTGAAATGATACTTGGGGGACAAGTGATTGAAACAAGTTCAGAGCAAATAATGAGATCTGTCGAAGAGATTGCAAGGCTGGAGAAACAGTCAAACACAACCAGCCTCATACCGAAGTCGATTTCAGAGCGTTTCAGCCGTTGAGCCGTGAGAGCTTCACTCATGTTATGGACAGAAACTTTGAATGCGTGAGCAGAAGAAATCAGATTGCATTTTTCTCCAGTCGCGTTGCGATTCTCTCAAGTCGCGAGCATCTACCATTTGACATGAACATGAGAGCTTGTAGCCATCGTGAATATCTCTGTGTATCCCGCATGAAATTGAATATGTGACCTGAAACGTGAATTCTTCAGTACTATCTGGTTTGCTTGCCGATTGCCAGTTGAGGCATCGTGTTTCCTAGACAAGAAAAATCATACTAGCCTGTTTCTCCTTCGGCTGATGATATCTGTGCTGTTTTTGATAAAAAAAAAAA]
[-] EMBL CA759298 [CCAGAGGCCCAGACAAGGGGGTGCTTGATTTCGTACAAGTTTTTGTTGAAACATTGGACAGATGCTTCAAGAATGTGTGTGAGCTTGACATCGTATTTAACTTCAACAAGCTGCATACAATNTTAGGTGAAATGATACTTGGGGGACAAGTGATTGAAACAAGTTCAGAGCAAATAATGAGATCTGTCGAAGAGATTGCAAGGCTGGAGAAACAGTCAAACACAACCAGCCTCATACCGAAGTCGATTTCAGAGCGTTTCAGCCGTTGAGCCGTGAGAGCTTCACTCATGTTATGGACAGAAACTTTGAATGCGTGAGCAGAAGAAATCAGATTGCATTTTTCTCCAGTCGCGTTGCGATTCTCTCAAGTCGCGAGCATCTACCATTTGACATGAACATGAGAGCTTGTAGCCATCGTGAATATCTCTGTGTATCCCGCATGAAATTGAATATGTGACCTGAAACGTGAATTCTTCAGTACTATCTGGTTTGCTTGCCGATTGCCAGTTGAGGCATCGTGTTTCCTAGACAAGAAAAATCATACTAGCCTGTTTCTCCTTCGGCTGATGATATCTGTGCTGTTTTTGATAAAAAAAAAAA]
consensusID : consensus_6415#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 555 fasta sequence
[ACGAGACAAGGGGGTACAAGTTTTTGTTGAAACATTGGACAGATGCTTCAAGAATGTGTGTGAGCTTGACATCGTATTTAACTTCAACAAGCTGCATACAATTTTAGATGAAATGATACTTGGGGGACAAGTGATTGAAACAAGTTCAGAGCAAATAATGAGATCTGTCGAAGAGATTGCAAGGCTGGAGAAACAGTCAAACACAACCAGCCTCATACCGAAGTCGATTTCAGAGCGTTTCAGCCGTTGAGCCGTGAGAGCTTCACTCATGTTATGGACAGAAACTTTGAATGCGTGAGCAGAAGAAATCAGATTGCATTTTTCTCCAGTCGCGTTGCGATTCTCTCAAGTCGCGAGCATCTACCATTTGACATGAACATGAGAGCCTGTAGCCATCGTGAATATCTTTGCGTATCCCGCATGAAATTGAATATGTGACCTGAAACGTGAATTCTTCAGTACTATCTGGTTTGCTTGCCGATTGCCAGTTGAGGCATCGTGTTTCCTAGACAAGAAAAATCATACTAGCCTGTTTCTCCTTAAAAAAAAAAAAAA]
[-] EMBL CA759297 [ACGAGACAAGGGGGTACAAGTTTTTGTTGAAACATTGGACAGATGCTTCAAGAATGTGTGTGAGCTTGACATCGTATTTAACTTCAACAAGCTGCATACAATTTTAGATGAAATGATACTTGGGGGACAAGTGATTGAAACAAGTTCAGAGCAAATAATGAGATCTGTCGAAGAGATTGCAAGGCTGGAGAAACAGTCAAACACAACCAGCCTCATACCGAAGTCGATTTCAGAGCGTTTCAGCCGTTGAGCCGTGAGAGCTTCACTCATGTTATGGACAGAAACTTTGAATGCGTGAGCAGAAGAAATCAGATTGCATTTTTCTCCAGTCGCGTTGCGATTCTCTCAAGTCGCGAGCATCTACCATTTGACATGAACATGAGAGCCTGTAGCCATCGTGAATATCTTTGCGTATCCCGCATGAAATTGAATATGTGACCTGAAACGTGAATTCTTCAGTACTATCTGGTTTGCTTGCCGATTGCCAGTTGAGGCATCGTGTTTCCTAGACAAGAAAAATCATACTAGCCTGTTTCTCCTTAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6415#0 GCTCTCCGCTTCGCCGGCGCCGCTCCCCCCACCCCCGCGCGCGGAAGATTGTCCTCGTGG 60
consensus_6415#1 ------------------------------------------------------------
consensus_6415#2 ------------------------------------------------------------
consensus_6415#0 CGGAGCGCGTGCTGCGGCTGTTGTGCTGCACAGCCGCCGGGCACCACATTTGCAGCAGCG 120
consensus_6415#1 ------------------------------------------------------------
consensus_6415#2 ------------------------------------------------------------
consensus_6415#0 CCGCCTCCGCCGCACTCGTCCATCGCCGGAGCTTCCGCTAGGGTTTCGGCGAGCCGGGGG 180
consensus_6415#1 ------------------------------------------------------------
consensus_6415#2 ------------------------------------------------------------
consensus_6415#0 GAGGGGGGGGGGGGTGAGGTGGGCCGTCCGCCGCCGCCTCCGCGGAGTTCCTGCCTGACG 240
consensus_6415#1 ------------------------------------------------------------
consensus_6415#2 ------------------------------------------------------------
consensus_6415#0 ACTGGATCACGCAGACTCTAACCAAACACCACCCGACTGATTTCGCTCGCCTCTTCCTCA 300
consensus_6415#1 ------------------------------------------------------------
consensus_6415#2 ------------------------------------------------------------
consensus_6415#0 TCCCCATCAGCCATGATCCAGGCCGTGATGGTGATGAGCACGCAGGGCAAGCCGCGCCTC 360
consensus_6415#1 ------------------------------------------------------------
consensus_6415#2 ------------------------------------------------------------
consensus_6415#0 CTCAAGTTCTACAGCTACCAGCCCCCCGAGAAGCATCAGGACCTCGTCCGCGGCGTCTTC 420
consensus_6415#1 ------------------------------------------------------------
consensus_6415#2 ------------------------------------------------------------
consensus_6415#0 CAGTTGTTGTCTGCAAGGCCGGACAGTGTCAGCAATTTCGTCAAGGTTGATGCAATCTTT 480
consensus_6415#1 ------------------------------------------------------------
consensus_6415#2 ------------------------------------------------------------
consensus_6415#0 GGACCGGGAGCGAAATTGGTCTACAAACATTTGGCCACATTGTACTTTGTTTTTGTCTTT 540
consensus_6415#1 ----------------------------------------------------------CC 2
consensus_6415#2 ------------------------------------------------------------
consensus_6415#0 GATAGCTCTGAAAATGAACTTGCGGTGCTTGATCTTGTACAAGTTTTTGTTGAAACATTG 600
consensus_6415#1 AGAGGCCCAGACAAGGG------GGTGCTTGATTTCGTACAAGTTTTTGTTGAAACATTG 56
consensus_6415#2 -----------------------ACGAGACAAGGGGGTACAAGTTTTTGTTGAAACATTG 37
* ************************
consensus_6415#0 GACAGATGCTTCAAGAATGTGTGTGAGCTTGACATCGTATTTAACTTCAACAAGCTGCAT 660
consensus_6415#1 GACAGATGCTTCAAGAATGTGTGTGAGCTTGACATCGTATTTAACTTCAACAAGCTGCAT 116
consensus_6415#2 GACAGATGCTTCAAGAATGTGTGTGAGCTTGACATCGTATTTAACTTCAACAAGCTGCAT 97
************************************************************
consensus_6415#0 ACAATTTTAGATGAAATGATACTTGGGGGACAAGTGATTGAAACAAGTTCAGAGCAAATA 720
consensus_6415#1 ACAATNTTAGGTGAAATGATACTTGGGGGACAAGTGATTGAAACAAGTTCAGAGCAAATA 176
consensus_6415#2 ACAATTTTAGATGAAATGATACTTGGGGGACAAGTGATTGAAACAAGTTCAGAGCAAATA 157
***** **** *************************************************
consensus_6415#0 ATGAGATCTGTCGAAGAGATTGCAAGGCTGGAGAAACAGTCAAACACAACCAGCCTCATA 780
consensus_6415#1 ATGAGATCTGTCGAAGAGATTGCAAGGCTGGAGAAACAGTCAAACACAACCAGCCTCATA 236
consensus_6415#2 ATGAGATCTGTCGAAGAGATTGCAAGGCTGGAGAAACAGTCAAACACAACCAGCCTCATA 217
************************************************************
consensus_6415#0 CCGAAGTCGATTTCAGAGCGTTTCAGCCGTTGAGCCGTGAGAGCTTCACTCATGTTATGG 840
consensus_6415#1 CCGAAGTCGATTTCAGAGCGTTTCAGCCGTTGAGCCGTGAGAGCTTCACTCATGTTATGG 296
consensus_6415#2 CCGAAGTCGATTTCAGAGCGTTTCAGCCGTTGAGCCGTGAGAGCTTCACTCATGTTATGG 277
************************************************************
consensus_6415#0 ACAGAAACTTTGAATGCGTGAGCAGAAGAAATCAGATTGCATTTTTCTCCAGTCGCGTTG 900
consensus_6415#1 ACAGAAACTTTGAATGCGTGAGCAGAAGAAATCAGATTGCATTTTTCTCCAGTCGCGTTG 356
consensus_6415#2 ACAGAAACTTTGAATGCGTGAGCAGAAGAAATCAGATTGCATTTTTCTCCAGTCGCGTTG 337
************************************************************
consensus_6415#0 CGATTCTCTCAAGTCGCGAGCATCTACCATTTGACATGAATATGAGAGCTTGTAGCCATC 960
consensus_6415#1 CGATTCTCTCAAGTCGCGAGCATCTACCATTTGACATGAACATGAGAGCTTGTAGCCATC 416
consensus_6415#2 CGATTCTCTCAAGTCGCGAGCATCTACCATTTGACATGAACATGAGAGCCTGTAGCCATC 397
**************************************** ******** **********
consensus_6415#0 GTGAATATCTCTGTGTATCCCGCATGAAATTGAATATGTGACCTGAAACGTGAATTCTTC 1020
consensus_6415#1 GTGAATATCTCTGTGTATCCCGCATGAAATTGAATATGTGACCTGAAACGTGAATTCTTC 476
consensus_6415#2 GTGAATATCTTTGCGTATCCCGCATGAAATTGAATATGTGACCTGAAACGTGAATTCTTC 457
********** ** **********************************************
consensus_6415#0 AGTACTATCTGGTTTGCTTGCCGATTGCCAGTTGAGGCATCGTGTCTCCTAGACAAGGAA 1080
consensus_6415#1 AGTACTATCTGGTTTGCTTGCCGATTGCCAGTTGAGGCATCGTGTTTCCTAGACAAGAAA 536
consensus_6415#2 AGTACTATCTGGTTTGCTTGCCGATTGCCAGTTGAGGCATCGTGTTTCCTAGACAAGAAA 517
********************************************* *********** **
consensus_6415#0 AATCATACTAGCCTGTTTCTCCTTCGGCTGATGATATCTGTGCTGTTTTTGATAGAATGT 1140
consensus_6415#1 AATCATACTAGCCTGTTTCTCCTTCGGCTGATGATATCTGTGCTGTTTTTGATAAAAAAA 596
consensus_6415#2 AATCATACTAGCCTGTTTCTCCTTAAAAAAAAAAAAAA---------------------- 555
************************ * * *
consensus_6415#0 TGTTCTTGGAAAATTGCGAAGGCGTTGTG 1169
consensus_6415#1 AAAA------------------------- 600
consensus_6415#2 -----------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||