These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6428#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1184 fasta sequence [TTCCTCGAGCACTGTTGGCCTACTGGAGGACAAATCACGGCACTAGACACCACCATCCTCTTACCTTCCCGGTTTCCCGGCGTGCGTCACACATGGAGGTGGCAGCCGCGGATTCCTCCGGCGGCGACCGTTACAGGTCTCACCTTACCGGCGACGGCGAGAAGAACACGGTGTGGCGGCACGGCGCTCCACCCACGTACGACGCCGTGAACAGCCTCTTCGAGGCCGAGAGGACCCAGGAGTGGCCGGCGGGGTCGCTGGAGGAGACGGTGCAGAACGCGATCAAGACGTGGGAGATGGAGCTGTCTTACAAGGCCAAGCTCGAGGACTTCAAGTCGGTGAGCCCCGGTCGGTTCCGTCTCTCCGTGAACGGCGGGCGGCCGCTCACCGGGGAGGAGACGCTCGCCGTGGGCAGCTACAACGCGCTGCTCACGAGCCCGATCCTGCCGGGCGCCGGCGCGTACGACGCCGCGGCCGAGACGTTCGAGTCCTCCCACGATCTGTTCCGCGCGGCCTTCCCGCGCGGGTTCGCGTGGGAGGTGATCCGCGTCTACTCCGGCCCGCCGGTGATCACGTTCAAGTTCCGGCACTGGGGCCACATGGACGGCCCCTACAAGGGCCACGCCCCCACCGGCGACAAGGTCGAGTTCTACGGCGTCGCCGTCCTCAAGGTGGATGAGCAGCTGCGGGCGGAGGACGTGGAGGTGTACTACGACCCAGGCGAGCTACTGGGGGGCCTTCTCAAGGGGCCCCTGCTGGTGCCGTCCGCGGAGGAGGAGGACGCGCGTCAGCTCGGCGAGAGGCTCGGCGAGGCGGCTATCGTGTCGGCGTCAGGCGCGGCCCCGCAGTCGCAGGCCTGCCCCTTTCTCGCCTCCGCGAAGCGGGAGGAGTGAAAGGGACCGATCGAGCGGCGACGACATGGTCGAGCCGAATAGCGAAACGTGCCCCGTTCATCTGTCGTCGCTGTAACCGCCCGGCGTTTCGCCATCATGATGGAGGTGACACCGGCTGAAAACGTTTATTTGCTCGTGTGTAGCGTGTGTGCTTATGGTGTTGTTAAATGCTTTGTACGATTCGGTTGGATTTTAAAGCTGGCGTCACAACGCCTGACTTCTTTAGTTGCTTTAGTGATACTAATCCACTTATGTGGGAAGAAAAAAAAAAAAAAAAAAAAAAGGCCACAT] [+] EMBL AK109409 [TTCCTCGAGCACTGTTGGCCTACTGGAGGACAAATCACGGCACTAGACACCACCATCCTCTTACCTTCCCGGTTTCCCGGCGTGCGTCACACATGGAGGTGGCAGCCGCGGATTCCTCCGGCGGCGACCGTTACAGGTCTCACCTTACCGGCGACGGCGAGAAGAACACGGTGTGGCGGCACGGCGCTCCACCCACGTACGACGCCGTGAACAGCCTCTTCGAGGCCGAGAGGACCCAGGAGTGGCCGGCGGGGTCGCTGGAGGAGACGGTGCAGAACGCGATCAAGACGTGGGAGATGGAGCTGTCTTACAAGGCCAAGCTCGAGGACTTCAAGTCGGTGAGCCCCGGTCGGTTCCGTCTCTCCGTGAACGGCGGGCGGCCGCTCACCGGGGAGGAGACGCTCGCCGTGGGCAGCTACAACGCGCTGCTCACGAGCCCGATCCTGCCGGGCGCCGGCGCGTACGACGCCGCGGCCGAGACGTTCGAGTCCTCCCACGATCTGTTCCGCGCGGCCTTCCCGCGCGGGTTCGCGTGGGAGGTGATCCGCGTCTACTCCGGCCCGCCGGTGATCACGTTCAAGTTCCGGCACTGGGGCCACATGGACGGCCCCTACAAGGGCCACGCCCCCACCGGCGACAAGGTCGAGTTCTACGGCGTCGCCGTCCTCAAGGTGGATGAGCAGCTGCGGGCGGAGGACGTGGAGGTGTACTACGACCCAGGCGAGCTACTGGGGGGCCTTCTCAAGGGGCCCCTGCTGGTGCCGTCCGCGGAGGAGGAGGACGCGCGTCAGCTCGGCGAGAGGCTCGGCGAGGCGGCTATCGTGTCGGCGTCAGGCGCGGCCCCGCAGTCGCAGGCCTGCCCCTTTCTCGCCTCCGCGAAGCGGGAGGAGTGAAAGGGACCGATCGAGCGGCGACGACATGGTCGAGCCGAATAGCGAAACGTGCCCCGTTCATCTGTCGTCGCTGTAACCGCCCGGCGTTTCGCCATCATGATGGAGGTGACACCGGCTGAAAACGTTTATTTGCTCGTGTGTAGCGTGTGTGCTTATGGTGTTGTTAAATGCTTTGTACGATTCGGTTGGATTTTAAAGCTGGCGTCACAACGCCTGACTTCTTTAGTTGCTTTAGTGATACTAATCCACTTATGTGGGAAGAAAAAAAAAAAAAAAAAAAAAAGGCCACAT] [+] EMBL AK061471 [ CACTAGACACCACCATCCTCTTACCTTCCCGGTTTCCCGGCGTGCGTCACACATGGAGGTGGCAGCCGCGGATTCCTCCGGCGGCGACCGTTACAGGTCTCACCTTACCGGCGACGGCGAGAAGAACACGGTGTGGCGGCACGGCGCTCCACCCACGTACGACGCCGTGAACAGCCTCTTCGAGGCCGAGAGGACCCAGGAGTGGCCGGCGGGGTCGCTGGAGGAGACGGTGCAGAACGCGATCAAGACGTGGGAGATGGAGCTGTCTTACAAGGCCAAGCTCGAGGACTTCAAGTCGGTGAGCCCCGGTCGGTTCCGTCTCTCCGTGAACGGCGGGCGGCCGCTCACCGGGGAGGAGACGCTCGCCGTGGGCAGCTACAACGCGCTGCTCACGAGCCCGATCCTGCCGGGCGCCGGCGCGTACGACGCCGCGGCCGAGACGTTCGAGTCCTCCCACGATCTGTTCCGCGCGGCCTTCCCGCGCGGGTTCGCGTGGGAGGTGATCCGCGTCTACTCCGGCCCGCCGGTGATCACGTTCAAGTTCCGGCACTGGGGCCACATGGACGGCCCCTACAAGGGCCACGCCCCCACCGGCGACAAGGTCGAGTTCTACGGCGTCGCCGTCCTCAAGGTGGATGAGCAGCTGCGGGCGGAGGACGTGGAGGTGTACTACGACCCAGGCGAGCTACTGGGGGGCCTTCTCAAGGGGCCCCTGCTGGTGCCGTCCGCGGAGGAGGAGGACGCGCGTCAGCTCGGCGAGAGGCTCGGCGAGGCGGCTATCGTGTCGGCGTCAGGCGCGGCCCCGCAGTCGCAGGCCTGCCCCTTTCTCGCCTCCGCGAAGCGGGAGGAGTGAAAGGGACCGATCGAGCGGCGACGACATGGTCGAGCCGAATAGCGAAACGTGCCCCGTTCATCTGTCGTCGCTGTAACCGCCCGGCGTTTCGCCATCATGATGGAGGTGACACCGGCTGAAAACGTTTATTTGCTCGTGTGTAGCGTGTGTGCTTATGGTGTTGTTAAATGCTTTGTACGATTCGGTTGGATTTTAAAGCTGGCGTCACAACGCC ] [+] EMBL AK106037 [ CACTAGACACCACCATCCTCTTACCTTCCCGGTTTCCCGGCGTGCGTCACACATGGAGGTGGCAGCCGCGGATTCCTCCGGCGGCGACCGTTACAGGTCTCACCTTACCGGCGACGGCGAGAAGAACACGGTGTGGCGGCACGGCGCTCCACCCACGTACGACGCCGTGAACAGCCTCTTCGAGGCCGAGAGGACCCAGGAGTGGCCGGCGGGGTCGCTGGAGGAGACGGTGCAGAACGCGATCAAGACGTGGGAGATGGAGCTGTCTTACAAGGCCAAGCTCGAGGACTTCAAGTCGGTGAGCCCCGGTCGGTTCCGTCTCTCCGTGAACGGCGGGCGGCCGCTCACCGGGGAGGAGACGCTCGCCGTGGGCAGCTACAACGCGCTGCTCACGAGCCCGATCCTGCCGGGCGCCGGCGCGTACGACGCCGCGGCCGAGACGTTCGAGTCCTCCCACGATCTGTTCCGCGCGGCCTTCCCGCGCGGGTTCGCGTGGGAGGTGATCCGCGTCTACTCCGGCCCGCCGGTGATCACGTTCAAGTTCCGGCACTGGGGCCACATGGACGGCCCCTACAAGGGCCACGCCCCCACCGGCGACAAGGTCGAGTTCTACGGCGTCGCCGTCCTCAAGGTGGATGAGCAGCTGCGGGCGGAGGACGTGGAGGTGTACTACGACCCAGGCGAGCTACTGGGGGGCCTTCTCAAGGGGCCCCTGCTGGTGCCGTCCGCGGAGGAGGAGGACGCGCGTCAGCTCGGCGAGAGGCTCGGCGAGGCGGCTATCGTGTCGGCGTCAGGCGCGGCCCCGCAGTCGCAGGCCTGCCCCTTTCTCGCCTCCGCGAAGCGGGAGGAGTGAAAGGGACCGATCGAGCGGCGACGACATGGTCGAGCCGAATAGCGAAACGTGCCCCGTTCATCTGTCGTCGCTGTAACCGCCCGGCGTTTCGCCATCATGATGGAGGTGACACCGGCTGAAAACGTTTATTTGCTCGTGTGTAGCGTGTGTGCTTATGGTGTTGTTAAATGCTTTGTACGATTCGGTTGGATTTTAAAGCTGGCGTCACAACGCC ] consensusID : consensus_6428#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 784 fasta sequence [TGTCTCTGTCTCTCTCTCTCTCTCTCTCTCCACCACCATCCTCTTACCTTCCCGGTTTCCCGGCGTGCGTCACAGATGGAGGTGGCAGCCGCGGATTCCTCCGGCGGCGACCGTTACAGGTCTCACCTTACCGGCGACGGCGAGAAAAACACGGTGTGGCGGCACGGCGCTCCACCCACGTACGACGCCGTGAACAGCCTCTTCGAGGCCGAGAGGACCCAGGAGTGGCCGGCGGGGTCGCTGGAGGAGACGGTGCANAACGCGATCAAGACGTGGGAGATGGAGCTGTCGCACAAGGCCAAGCTCGAGGACTTCAAGTCGGTGAGCCCCGGTCGGTTCCGTCTCTCCGTGAACGGCGGGCGGCCGCTCACCGGGGAGGAGACGCTCGCCGTGGGCAGCTACAACGCGCTGCTCACGAGCCCGATCCTGCCGGGCGCCGGCGCGTACGACGCCGCGGCCGAGACGTTCGAGTCCTCCCACGATCTGTTCCGCGCGGGCTTCCCGCGCGGGTTCGCGTGGGAGGTGATCCGCGTCTACTCCGGGCCCGCCGGTGATCACGTTCAAGTTCCGGCACTGGGGCCACATGGACGGGCCCTACAAGGGCCACGCCCCCCACCGCGACAGGGCGAGTTCTACGGCGTCGCCGTCCTTAAGGGGATGAACCACTTCNGGCCGGAGGACGTGGAGGTAGCATCTACCCAGGCGACGTACCTGGGGGGCCTTCTCAATGGGCCCCTGCTTGGTGCCGCTCCCGGGGGGGGAGGACTCGCCTATACTTCGGCGG] [+] EMBL BE040667 [TGTCTCTGTCTCTCTCTCTCTCTCTCTCTCCACCACCATCCTCTTACCTTCCCGGTTTCCCGGCGTGCGTCACAGATGGAGGTGGCAGCCGCGGATTCCTCCGGCGGCGACCGTTACAGGTCTCACCTTACCGGCGACGGCGAGAAAAACACGGTGTGGCGGCACGGCGCTCCACCCACGTACGACGCCGTGAACAGCCTCTTCGAGGCCGAGAGGACCCAGGAGTGGCCGGCGGGGTCGCTGGAGGAGACGGTGCANAACGCGATCAAGACGTGGGAGATGGAGCTGTCGCACAAGGCCAAGCTCGAGGACTTCAAGTCGGTGAGCCCCGGTCGGTTCCGTCTCTCCGTGAACGGCGGGCGGCCGCTCACCGGGGAGGAGACGCTCGCCGTGGGCAGCTACAACGCGCTGCTCACGAGCCCGATCCTGCCGGGCGCCGGCGCGTACGACGCCGCGGCCGAGACGTTCGAGTCCTCCCACGATCTGTTCCGCGCGGGCTTCCCGCGCGGGTTCGCGTGGGAGGTGATCCGCGTCTACTCCGGGCCCGCCGGTGATCACGTTCAAGTTCCGGCACTGGGGCCACATGGACGGGCCCTACAAGGGCCACGCCCCCCACCGCGACAGGGCGAGTTCTACGGCGTCGCCGTCCTTAAGGGGATGAACCACTTCNGGCCGGAGGACGTGGAGGTAGCATCTACCCAGGCGACGTACCTGGGGGGCCTTCTCAATGGGCCCCTGCTTGGTGCCGCTCCCGGGGGGGGAGGACTCGCCTATACTTCGGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6428#0 TTCCTCGAGCACTGTTGGCCTACTGGAGGACAAATCACGGCACTAGACACCACCATCCTC 60 consensus_6428#1 ----------------TGTCT-CTGTCTCTCTCTCTCTCTCTCTCTCCACCACCATCCTC 43 * ** *** * * ** ************* consensus_6428#0 TTACCTTCCCGGTTTCCCGGCGTGCGTCACACATGGAGGTGGCAGCCGCGGATTCCTCCG 120 consensus_6428#1 TTACCTTCCCGGTTTCCCGGCGTGCGTCACAGATGGAGGTGGCAGCCGCGGATTCCTCCG 103 ******************************* **************************** consensus_6428#0 GCGGCGACCGTTACAGGTCTCACCTTACCGGCGACGGCGAGAAGAACACGGTGTGGCGGC 180 consensus_6428#1 GCGGCGACCGTTACAGGTCTCACCTTACCGGCGACGGCGAGAAAAACACGGTGTGGCGGC 163 ******************************************* **************** consensus_6428#0 ACGGCGCTCCACCCACGTACGACGCCGTGAACAGCCTCTTCGAGGCCGAGAGGACCCAGG 240 consensus_6428#1 ACGGCGCTCCACCCACGTACGACGCCGTGAACAGCCTCTTCGAGGCCGAGAGGACCCAGG 223 ************************************************************ consensus_6428#0 AGTGGCCGGCGGGGTCGCTGGAGGAGACGGTGCAGAACGCGATCAAGACGTGGGAGATGG 300 consensus_6428#1 AGTGGCCGGCGGGGTCGCTGGAGGAGACGGTGCANAACGCGATCAAGACGTGGGAGATGG 283 ********************************** ************************* consensus_6428#0 AGCTGTCTTACAAGGCCAAGCTCGAGGACTTCAAGTCGGTGAGCCCCGGTCGGTTCCGTC 360 consensus_6428#1 AGCTGTCGCACAAGGCCAAGCTCGAGGACTTCAAGTCGGTGAGCCCCGGTCGGTTCCGTC 343 ******* *************************************************** consensus_6428#0 TCTCCGTGAACGGCGGGCGGCCGCTCACCGGGGAGGAGACGCTCGCCGTGGGCAGCTACA 420 consensus_6428#1 TCTCCGTGAACGGCGGGCGGCCGCTCACCGGGGAGGAGACGCTCGCCGTGGGCAGCTACA 403 ************************************************************ consensus_6428#0 ACGCGCTGCTCACGAGCCCGATCCTGCCGGGCGCCGGCGCGTACGACGCCGCGGCCGAGA 480 consensus_6428#1 ACGCGCTGCTCACGAGCCCGATCCTGCCGGGCGCCGGCGCGTACGACGCCGCGGCCGAGA 463 ************************************************************ consensus_6428#0 CGTTCGAGTCCTCCCACGATCTGTTCCGCGCGGCCTTCCCGCGCGGGTTCGCGTGGGAGG 540 consensus_6428#1 CGTTCGAGTCCTCCCACGATCTGTTCCGCGCGGGCTTCCCGCGCGGGTTCGCGTGGGAGG 523 ********************************* ************************** consensus_6428#0 TGATCCGCGTCTACTCCGG-CCCGCCGGTGATCACGTTCAAGTTCCGGCACTGGGGCCAC 599 consensus_6428#1 TGATCCGCGTCTACTCCGGGCCCGCCGGTGATCACGTTCAAGTTCCGGCACTGGGGCCAC 583 ******************* **************************************** consensus_6428#0 ATGGACGGCCCCTACAAGGGCCACGCCCCCACCGGCGACAAGGTCGAGTTCTACGGCGTC 659 consensus_6428#1 ATGGACGGGCCCTACAAGGGCCACGCCCCCCACCGCGACAGGG-CGAGTTCTACGGCGTC 642 ******** ********************* * ****** ** **************** consensus_6428#0 GCCGTCCTCAAGGTGGATGAGCAGCTGCGGGC-GGAGGACGTGGAGGTGTACTACGACCC 718 consensus_6428#1 GCCGTCCTTAAGG-GGATGAACCACTTCNGGCCGGAGGACGTGGAGGTA-GCATCTACCC 700 ******** **** ****** * ** * *** *************** * * **** consensus_6428#0 AGGCGAGCTAC-TGGGGGGCCTTCTCAAGGGGCCCCTGCT-GGTGCCGTCCGCGGAGGAG 776 consensus_6428#1 AGGCGACGTACCTGGGGGGCCTTCTCAATGGGCCCCTGCTTGGTGCCGCTCCCGGGGGGG 760 ****** *** **************** *********** ******* * *** ** * consensus_6428#0 GAGGACGCGCGT-CAGCTCGGCGAGAGGCTCGGCGAGGCGGCTATCGTGTCGGCGTCAGG 835 consensus_6428#1 GAGGACTCGCCTATACTTCGGCGG------------------------------------ 784 ****** *** * * ****** consensus_6428#0 CGCGGCCCCGCAGTCGCAGGCCTGCCCCTTTCTCGCCTCCGCGAAGCGGGAGGAGTGAAA 895 consensus_6428#1 ------------------------------------------------------------ consensus_6428#0 GGGACCGATCGAGCGGCGACGACATGGTCGAGCCGAATAGCGAAACGTGCCCCGTTCATC 955 consensus_6428#1 ------------------------------------------------------------ consensus_6428#0 TGTCGTCGCTGTAACCGCCCGGCGTTTCGCCATCATGATGGAGGTGACACCGGCTGAAAA 1015 consensus_6428#1 ------------------------------------------------------------ consensus_6428#0 CGTTTATTTGCTCGTGTGTAGCGTGTGTGCTTATGGTGTTGTTAAATGCTTTGTACGATT 1075 consensus_6428#1 ------------------------------------------------------------ consensus_6428#0 CGGTTGGATTTTAAAGCTGGCGTCACAACGCCTGACTTCTTTAGTTGCTTTAGTGATACT 1135 consensus_6428#1 ------------------------------------------------------------ consensus_6428#0 AATCCACTTATGTGGGAAGAAAAAAAAAAAAAAAAAAAAAAGGCCACAT 1184 consensus_6428#1 ------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||