These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6453#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 826 fasta sequence [CCAGAGGACGAGACAAGGGGGAAGCACTTCAAGTTAAGGATGGCAAATCTGAAGATGCTGCAAAGAACAAACGTGACAATAGTGCTGAAAATGGTCCGAAAGGTGGGGTATCTGTAGAAGTTGCTGAGAACATAAACAGAAGTGCGGCTGCTGAAAGTTCGCAGGATGGACGGTGTGAACATGACAGAGAGAATGCAAACAATGGCGGTGACTTTATCAGGGATGATAATGCTGTGCAGGATTCTATCAGTGGTGATCATGTGGAATATTCCAGAGATGGTGAAGCTGAAAGGGCAAAGATGAACAGTAATGGTGAAGCCGTAGAAGCCGTAGATGGCGGAACTGAAGCATCAAAAGGTGGAGAAAGTGCTGACCCCAAAGATGATAACAACCGAAATGGCGATAAAAGTGCACTAGATATTGATGATCGTGGAGCTGAAGATTCTCACTGCAACAAAAACGGTGAAAATGTAGCTTGTGTGGAAAATGGCAAAACTAATGAAGCTGGCAACACTGAGAACGGTGAAAATGTGGTATCCCACGATGCTGAAAAGGATGACAAAAGAAAGGATNCCATTCAAAATGCAAACCCCCGAACAGA-CCCTAACAGATGCTGGTGATGATGGTAAAACTGAAGATGCCGAGCACAACGNCAACACCGAAGCTGATGTTGATTCTTGNGCCGATGGTACTGCTGAGAATTAGAGGACCAACTGCCAACGGNACAAAGATGGATTAGCTCAAGTAGCC-CAGATTTGCANCTTTATGTTGGNAACTCCCCCTGANGGGGGTCTNACNTTGAATAGG-ATTANCCTTGGGCCAGGGC] [+] EMBL CA766513 [CCAGAGGACGAGACAAGGGGGAAGCACTTCAAGTTAAGGATGGCAAATCTGAAGATGCTGCAAAGAACAAACGTGACAATAGTGCTGAAAATGGTCCGAAAGGTGGGGTATCTGTAGAAGTTGCTGAGAACATAAACAGAAGTGCGGCTGCTGAAAGTTCGCAGGATGGACGGTGTGAACATGACAGAGAGAATGCAAACAATGGCGGTGACTTTATCAGGGATGATAATGCTGTGCAGGATTCTATCAGTGGTGATCATGTGGAATATTCCAGAGATGGTGAAGCTGAAAGGGCAAAGATGAACAGTAATGGTGAAGCCGTAGAAGCCGTAGATGGCGGAACTGAAGCATCAAAAGGTGGAGAAAGTGCTGACCCCAAAGATGATAACAACCGAAATGGCGATAAAAGTGCACTAGATATTGATGATCGTGGAGCTGAAGATTCTCACTGCAACAAAAACGGTGAAAATGTAGCTTGTGTGGAAAATGGCAAAACTAATGAAGCTGGCAACACTGAGAACGGTGAAAATGTGGTATCCCACGATGCTGAAAAGGATGACAAAAGAAAGGATNCCATTCAAAATGCAAACCCCCGAACAGA CCCTAACAGATGCTGGTGATGATGGTAAAACTGAAGATGCCGAGCACAACGNCAACACCGAAGCTGATGTTGATTCTTGNGCCGATGGTACTGCTGAGAATTAGAGGACCAACTGCCAACGGNACAAAGATGGATTAGCTCAAGTAGCC CAGATTTGCANCTTTATGTTGGNAACTCCCCCTGANGGGGGTCTNACNTTGAATAGG ATTANCCTTGGGCCAGGGC] [+] EMBL CB096527 [ AGGGGGAAGCACTTCAAGNTAAGGATGGCAAATCTGAAGATGCTGCAAAGAACAAACGTGACAATAGTGCTGAAAATGGTCCGAAAGGTGGGGTATCTGTAGAAGTTGCTGAGAACATAAACAGAAGTGCGGCTGCTGAAAGTTCGCAGGATGGACGGTGTGAACATGACAGAGAGAATGCAGACAATGGCGGTGACTTTATCAGGGATGATAATGCTGTGCAGGATTCTATCAGTGGTGATCATGTGGAATATTCCAGAGATGGTGAAGCTGAAAGGGCAAAGATGAACAGTAATGGTGAAGCCGTAGAAGCCGTAGATGGCGGAACTGAAGCATCAAAAGGTGGAGAAAGTGCTGACCCCAAAGATGATAACAACCGAAATGGTGATAAAAGTGCACTAGATATTGATGATCGTGGAGCTGAAGATTCTCACTGCAACAAAAACGGTGAAAATGTAGCTTGTGTGGAAAATGGCAAAACTAATGAAGCTGGCAACACTGAGAACGGTGAAAATGTGGTATCCCACGATGCTGAAAAGGATGACAAAAGAAAGGATCCCATTCAAAATGCAAA CCCCGAACAGACCCCTAACAGATGCTGGTGATGATGGTAAAACTGAAGATGCCGAGCACAACGCCAACACCGAAGCTGATGNTGATTCTTGGGCCGATGGTACTGCTGAGAATTAGAGGACCAACTGCNAACGGNACAGAGATGGATTAGCTCAAGTAGCCACAGATATGCAGCTTTATGTTGGAAACTACCACTGGTGGTGTTCTAAC TTGAGTAGGAATTANCCTTGG ] consensusID : consensus_6453#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 410 fasta sequence [CAGACCCTAACAGATGCTGGTGATGATGGTAAAACTGAAGATGCCGAGCACAACGCCAACACCGAAGCTGATGTTGATTCTTGTGCCGATGGTACTGCTGAGAATTAGAGGACCAACTGCAAACGGAACAGAGATGGATTAGCTCAAGTAGCACAGATATGCAGCTTTATGTTGGAAACTACCACTGATGGTGTTCTAACTTGAGTAGGATTAGCTTGTGCAGGGTCCATGTAGAAGTCTTGCTGTAGTAGATAGTAGAAATGTTCAAACTGCCATGTAAATTATCTTAGCTTGAAGGAGATGTATATTATGTAGCAGTGCAGTGCAGACCCTGGATGCTGGAGCAGTTCATTCCAGTCGTATTTATAACTGATGTTCAAAGGTTTTGTATCAAAGCTTAAAAAAAAAAA] [+] EMBL CF329980 [CAGACCCTAACAGATGCTGGTGATGATGGTAAAACTGAAGATGCCGAGCACAACGCCAACACCGAAGCTGATGTTGATTCTTGTGCCGATGGTACTGCTGAGAATTAGAGGACCAACTGCAAACGGAACAGAGATGGATTAGCTCAAGTAGCACAGATATGCAGCTTTATGTTGGAAACTACCACTGATGGTGTTCTAACTTGAGTAGGATTAGCTTGTGCAGGGTCCATGTAGAAGTCTTGCTGTAGTAGATAGTAGAAATGTTCAAACTGCCATGTAAATTATCTTAGCTTGAAGGAGATGTATATTATGTAGCAGTGCAGTGCAGACCCTGGATGCTGGAGCAGTTCATTCCAGTCGTATTTATAACTGATGTTCAAAGGTTTTGTATCAAAGCTTAAAAAAAAAAA] [-] EMBL CF329981 [ GTGCCGATGGTACTGTTGAGAATTAAAGGCCCAACTGCAAACGGACCAGAGATGGATTAGCTCAAGTAGCCCAGATATGCAGCTTTATGTTGGAAACTCCCACTGATGGTGTTTTAACTTGAGTAGGATTAGCTTGTGCAGGGTCCATGTAGAAGTCTTGCTGTAGTAGATAGTAGAAATGTTCAAACTGCCATGTAAATTATTTTAGCTTGAAGGAGATGTATATTATGTACCAGTCCAGTGCAGCCCCTGGATGCTGGACCAGTTCATTCCAGTGGTATTTATAACTGATGTTCAAAGGTTTGGTATCAAAGCTTAAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6453#0 CCAGAGGACGAGACAAGGGGGAAGCACTTCAAGTTAAGGATGGCAAATCTGAAGATGCTG 60 consensus_6453#1 --------------CAGACCCTAACAGATGCTGGTGATGATGGTAAAACTGAAGATGCCG 46 ** * ** * * * * ***** *** ********** * consensus_6453#0 CAAAGAACAAACGTGACAATAGTGCTGAAAATGGTCCGAAAGGTGG-GGTATCTGTAGAA 119 consensus_6453#1 ---AGCACAACGCCAACACCGAAGCTGATGTTGATTCTTGTGCCGATGGTACTGCTGAGA 103 ** **** *** ***** ** * * * * **** * * consensus_6453#0 GTTGCTGAG---AACATAAACAGAAGTGCGGCTGCTGAAAGTTCGCAGGATGGACGGTGT 176 consensus_6453#1 ATTAGAGGACCAACTGCAAACGGAACAGAGATGGATTAGCTCAAGTAGCACAGATA-TGC 162 ** * * **** *** * * * * * * ** * ** ** consensus_6453#0 GAACATGACAGAGAGAATGCAAACAATGGCGGTGACTTTATCAGGGATGATAATGCTGTG 236 consensus_6453#1 AGCTTTATGTTGGAAACTACCACTGATGGTGTT--CTAACTTGAGTAGGATTAGCTTGTG 220 * ** * * * * **** * * ** * * * *** * **** consensus_6453#0 CAGGATTCTATCAGTGGTGATCATGTGGAATATTCCAGAGATGGTGAAGCTGAAAGGGCA 296 consensus_6453#1 CAGGGTCCATGTAGAAGTCTTGCTGTAGTAGATAGTAGAAATGTTCAAACTGCCATGTAA 280 **** * * ** ** * *** * * ** *** *** * ** *** * * * consensus_6453#0 AAGATGAACAGTAATGGTGAAGCCGTAGAAGCCGTAGATGGCGGAACTGAAGCATCAAAA 356 consensus_6453#1 ATTATCTTAGCT--TGAAGGAGATGTATATTATGTAG-CAGTGCAGTGCAGACCCTGGAT 337 * ** * ** * ** *** * **** * * * * * * consensus_6453#0 GGTGGAGAAAGTGCTGACCCCAAAGATGATAACAACCGAAATGGCGATAAAAGTGCACTA 416 consensus_6453#1 GCTGGAGCA---GTTCATTCCAGTCGTATTTATAACTGATGTT-CAAAGGTTTTGTATCA 393 * ***** * * * * *** * * * *** ** * * * ** * * consensus_6453#0 GATATTGATGATCGTGGAGCTGAAGATTCTCACTGCAACAAAAACGGTGAAAATGTAGCT 476 consensus_6453#1 AAGCTTAAAAAAAAAAA------------------------------------------- 410 * ** * * consensus_6453#0 TGTGTGGAAAATGGCAAAACTAATGAAGCTGGCAACACTGAGAACGGTGAAAATGTGGTA 536 consensus_6453#1 ------------------------------------------------------------ consensus_6453#0 TCCCACGATGCTGAAAAGGATGACAAAAGAAAGGATNCCATTCAAAATGCAAACCCCCGA 596 consensus_6453#1 ------------------------------------------------------------ consensus_6453#0 ACAGACCCTAACAGATGCTGGTGATGATGGTAAAACTGAAGATGCCGAGCACAACGNCAA 656 consensus_6453#1 ------------------------------------------------------------ consensus_6453#0 CACCGAAGCTGATGTTGATTCTTGNGCCGATGGTACTGCTGAGAATTAGAGGACCAACTG 716 consensus_6453#1 ------------------------------------------------------------ consensus_6453#0 CCAACGGNACAAAGATGGATTAGCTCAAGTAGCCCAGATTTGCANCTTTATGTTGGNAAC 776 consensus_6453#1 ------------------------------------------------------------ consensus_6453#0 TCCCCCTGANGGGGGTCTNACNTTGAATAGGATTANCCTTGGGCCAGGGC 826 consensus_6453#1 -------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||