These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6474#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 993 fasta sequence [AGATCAGGGTTGCCCATTTGCCATGGTTTCTGGTACTGTCTGTGCAGAATGGCTGGAATGTATGGGCAGCTATCAGAAAATGTGTGCAAAGTCACCATATTTTAGCAAACTTTTGAAACTATCAGAAATTTTTGAGGAAGTTGCTATCTTCATACAGTACCCCGTCTGATGGGCTTGAGCTAGGAAGCACCAGAAGCTCAGTTCTAGCTGATAGACCATTAAGTGCTCCATTCATGATTAAGGGCGAATAGTGCTGAGAAAGTGTGAGGTCTCTTCCCTGGCCAAACTGGCTAAAAGGTGCTGAGAAGTCTCTCCACCGATAATTTCAGCTCGTCAGTCATTCGGAGCTTGGTGAAGCACTAGGAAGGCACTTTGCAACATTGTATCTCTAGCTAAGCTTCAAGCCTTCAACTGCAGAATGTGTAAGGGTGCAACCGTGTACAGTAGGCTTGCACACGTGAGATCTGTCTATAGCGGTGTAATAGCCTAATTGTGTATATATGTTAGCCCTGAAGCGTGTAGTTTTCCTCACCCAATACCTCGGTCGCCTTGGCGCGCAAATCTTTCTCTAGTTAAAAGGCTGTTCTTAGTAATGGGAAATGGAAAGGAAATTTTGAGTGATGCTGGATTGCTGGTTGCTCCCTTTTTCCTNCATTGAGTTCAGCTGGTGATGGCATTCTCGNTTCTGTCATCTGGCAGAGAANGCACTACTGGCCCAAGTGACCCATGGCATAGCCAGAAACAGAATGCTNCATCAGTCCATCTGATGAGATATGTGTGAANAAGGTTTCAACTGAGCTGATTATAGNGCTGTAAAGCGGCTTAGCACTATGTAAATCATGTGTTATGCACCATGTATCATGTATGATCCTTGGAAGTTCTGGATGCAAAAGTGAGTTGTGCACTTGCCATGTAAGTTCTCTATGATGAAAAAGGCCAAGTGTACTATTGTCTATGTATATCATTTCAGTTTTTGCATAACNNNNNNANAAA] [+] EMBL CA766523 [AGATCAGGGTTGCCCATTTGCCATGGTTTCTGGTACTGTCTGTGCAGAATGGCTGGAATGTATGGGCAGCTATCAGAAAATGTGTGCAAAGTCACCATATTTTAGCAAACTTTTGAAACTATCAGAAATTTTTGAGGAAGTTGCTATCTTCATACAGTACCCCGTCTGATGGGCTTGAGCTAGGAAGCACCAGAAGCTCAGTTCTAGCTGATAGACCATTAAGTGCTCCATTCATGATTAAGGGCGAATAGTGCTGAGAAAGTGTGAGGTCTCTTCCCTGGCCAAACTGGCTAAAAGGTGCTGAGAAGTCTCTCCACCGATAATTTCAGCTCGTCAGTCATTCGGAGCTTGGTGAAGCACTAGGAAGGCACTTTGCAACATTGTATCTCTAGCTAAGCTTCAAGCCTTCAACTGCAGAATGTGTAAGGGTGCAACCGTGTACAGTAGGCTTGCACACGTGAGATCTGTCTATAGCGGTGTAATAGCCTAATTGTGTATATATGTTAGCCCTGAAGCGTGTAGTTTTCCTCACCCAATACCTCGGTCGCCTTGGCGCGCAAATCTTTCTCTAGTTAAAAGGCTGTTCTTAGTAATGGGAAATGGAAAGGAAATTTTGAGTGATGCTGGATTGCTGGTTGCTCCCTTTTTCCTNCATTGAGTTCAGCTGGTGATGGCATTCTCGNTTCTGTCATCTGGCAGAGAANGCACTACTGGCCCAAGTGACCCATGGCATAGCCAGAAACAGAATGCTNCATCAGTCCATCTGATGAGATATGTGTGAANAAGGTTTCAACTGAGCTGATTATAGNGCTGNAAAGCGGCTTAACACTATGTAAATCATGNGGTATGCNCCATGGATCA ] [+] EMBL CF196749 [ CTAATTGTGTATATATGTTAGCCCTGAAGCGTGTAGTTTTCCTCACCCAATACCTCGGTCGCCTTGGCGCGCAAATCTTTCTCTAGTTAAAAGGCTGTTCTTAGTAATGGGAAATGGAAAGGAAATTTTGAGTGATGCTGGATTGCTGGTTGCTCCCTTTTTCCTCCATTGAGTTCAGCTGGTGATGGCATTCTCGTTTCTGTCATCTGGCAGAGAAGGCACTACTGCCCCAAGTGACCCATGGCATAGCCAGAAACAGAATGCTCCATCAGTCCATCTGATGAGATATGTGTGAA GAGGTTTCAGCTGAGCTGATTATAGTGCTGTAAAGCGGCTTAGCACTATGTAAATCATGTGTTATGCACCATGTATCATGTATGATCCTTGGAAGTTCTGGATGCAAAAGTGAGTTGTGCACTTGCCATGTAAGTTCTCTATGATGAAAAAGGCCAAGTGTACTATTGTCTATGTATATCATTTCAGTTTTTGCATAACNNNNNNANAAA] [+] EMBL CF330585 [ GCTGTAAAGCGGCTTAGCACTATGTAAATCATGTGTTATGCACCATGTATCATGTATGATCCTTGGAAGTTCTGGATGCAAAAGTGAGTTGTGCACTTGCCATGTAAGTTCTCTATGATGAAAAAGGCCAAGAGTACTATTGTTTATGTATATCATTTCAGTT ] consensusID : consensus_6474#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 503 fasta sequence [ACCCTTAANNCGANGGTAAGGGCACCGGAAANNAGNTGNAAGGNGAATTTTTAAAGGGTATAAANCNAATTGNGNAANAAGTANCCCNGAAGNGGTAGTTTCTTCACCCAANACNTCGTTCCCNTGGGCGCGCAAATNTTTTTNTAGTTTAAAAGGCTGTTCTTAGTAATGGGAAATGGAAAGGAAATTTTGAGTGATGCTGGATTGCTGGTTGCTCCCTTTTTCCTCCATTGAGTTCAGCTGGTGATGGCATTCTCGTTTCTGTCATCTGGCAGAGAAGGCACTACTGCCCCAAGTGACCCATGGCATAGCCAGAAACAGAATGCTCCATCAGTCCATCTGATGAGATATGTGTGAAGAGGTTTCAGCTGAGCTGATTATAGTGCTGTAAAGCGGCTTAGCACTATGTAAATCATGTGTTATGCACCATGTATCATGTATGATCCTTGGAAGTTCTGGATGCAAAAGTGAGTTGTGCACTTGCCATGTAAAAAAAAAAAAAA] [+] EMBL AA753693 [ACCCTTAANNCGANGGTAAGGGCACCGGAAANNAGNTGNAAGGNGAATTTTTAAAGGGTATAAANCNAATTGNGNAANAAGTANCCCNGAAGNGGTAGTTTCTTCACCCAANACNTCGTTCCCNTGGGCGCGCAAATNTTTTTNTAGTTTAAAAGGCTGTTCTTAGTAATGGGAAATGGAAAGGAAATTTTGAGTGATGCTGGATTGCTGGTTGCTCCCTTTTTCCTCCATTGAGTTCAGCTGGTGATGGCATTCTCGTTTCTGTCATCTGGCAGAGAAGGCACTACTGCCCCAAGTGACCCATGGCATAGCCAGAAACAGAATGCTCCATCAGTCCATCTGATGAGATATGTGTGAAGAGGTTTCAGCTGAGCTGATTATAGTGCTGTAAAGCGGCTTAGCACTATGTAAATCATGTGTTATGCACCATGTATCATGTATGATCCTTGGAAGTTCTGGATGCAAAAGTGAGTTGTGCACTTGCCATGTAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6474#0 AGATCAGGGTTGCCCATTTGCCATGGTTTCTGGTACTGTCTGTGCAGAATGGCTGGAATG 60 consensus_6474#1 ------------------------------------------------------------ consensus_6474#0 TATGGGCAGCTATCAGAAAATGTGTGCAAAGTCACCATATTTTAGCAAACTTTTGAAACT 120 consensus_6474#1 ------------------------------------------------------------ consensus_6474#0 ATCAGAAATTTTTGAGGAAGTTGCTATCTTCATACAGTACCCCGTCTGATGGGCTTGAGC 180 consensus_6474#1 ------------------------------------------------------------ consensus_6474#0 TAGGAAGCACCAGAAGCTCAGTTCTAGCTGATAGACCATTAAGTGCTCCATTCATGATTA 240 consensus_6474#1 ------------------------------------------------------------ consensus_6474#0 AGGGCGAATAGTGCTGAGAAAGTGTGAGGTCTCTTCCCTGGCCAAACTGGCTAAAAGGTG 300 consensus_6474#1 ------------------------------------------------------------ consensus_6474#0 CTGAGAAGTCTCTCCACCGATAATTTCAGCTCGTCAGTCATTCGGAGCTTGGTGAAGCAC 360 consensus_6474#1 ------------------------------------------------------------ consensus_6474#0 TAGGAAGGCACTTTGCAACATTGTATCTCTAGCTAAGCTTCAAGCCTTCAACTGCAGAAT 420 consensus_6474#1 ------------------------------------------ACCCTTAANNCGANG--- 15 * **** * * * consensus_6474#0 GTGTAAGGGTGCAACCGTGTACAGTAGGCTTGCACACGTGAGATCTGTCTATAGCGGTGT 480 consensus_6474#1 --GTAAGGGCAC-----CGGAAANNAGNT--------GNAAGGNGAATTTTTAAAGG-GT 59 ******* * * * * ** * ** * * ** ** ** consensus_6474#0 AATAGCCTAATTGTGTATATATGTTAGCCCTGAAGCGTGTAGTTTTCCTCACCCAATACC 540 consensus_6474#1 ATAAANCNAATTGNGNA-ANAAGT-ANCCCNGAAGNG-GTAGTTT-CTTCACCCAANACN 115 * * * ***** * * * * ** * *** **** * ******* * ******** ** consensus_6474#0 TCGGTCGCCTTGGCGCGCAAATCTTTCTCTAGTT-AAAAGGCTGTTCTTAGTAATGGGAA 599 consensus_6474#1 TCGTTCCCNTGGGCGCGCAAATNTTTTTNTAGTTTAAAAGGCTGTTCTTAGTAATGGGAA 175 *** ** * * *********** *** * ***** ************************* consensus_6474#0 ATGGAAAGGAAATTTTGAGTGATGCTGGATTGCTGGTTGCTCCCTTTTTCCTNCATTGAG 659 consensus_6474#1 ATGGAAAGGAAATTTTGAGTGATGCTGGATTGCTGGTTGCTCCCTTTTTCCTCCATTGAG 235 **************************************************** ******* consensus_6474#0 TTCAGCTGGTGATGGCATTCTCGNTTCTGTCATCTGGCAGAGAANGCACTACTGGCCCAA 719 consensus_6474#1 TTCAGCTGGTGATGGCATTCTCGTTTCTGTCATCTGGCAGAGAAGGCACTACTGCCCCAA 295 *********************** ******************** ********* ***** consensus_6474#0 GTGACCCATGGCATAGCCAGAAACAGAATGCTNCATCAGTCCATCTGATGAGATATGTGT 779 consensus_6474#1 GTGACCCATGGCATAGCCAGAAACAGAATGCTCCATCAGTCCATCTGATGAGATATGTGT 355 ******************************** *************************** consensus_6474#0 GAANAAGGTTTCAACTGAGCTGATTATAGNGCTGTAAAGCGGCTTAGCACTATGTAAATC 839 consensus_6474#1 GAAGA-GGTTTCAGCTGAGCTGATTATAGTGCTGTAAAGCGGCTTAGCACTATGTAAATC 414 *** * ******* *************** ****************************** consensus_6474#0 ATGTGTTATGCACCATGTATCATGTATGATCCTTGGAAGTTCTGGATGCAAAAGTGAGTT 899 consensus_6474#1 ATGTGTTATGCACCATGTATCATGTATGATCCTTGGAAGTTCTGGATGCAAAAGTGAGTT 474 ************************************************************ consensus_6474#0 GTGCACTTGCCATGTAAGTTCTCTATGATGAAAAAGGCCAAGTGTACTATTGTCTATGTA 959 consensus_6474#1 GTGCACTTGCCATGTAAA------AAAAAAAAAAA------------------------- 503 ***************** * * ***** consensus_6474#0 TATCATTTCAGTTTTTGCATAACNNNNNNANAAA 993 consensus_6474#1 ---------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||