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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6535#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 994 fasta sequence
[TAGTTGTATAACTTGTATACGTAGTATTTCTCCCGTGGGTCCAATTAATGGTCCATATGTTAGGTCTCGACTTTGATTTTCAAGCACCAATGCCCACGGAGTGCACAGTATATATCAATTATATGCATGCAGAAACTTACAGGATTGCATGGACGGGGTGCAGCATTCAGCATTCTCATGCCTGCTAATTGCTGTTCCAGCAATCCTTTTTTAGGGCAGTGCCATTGCTGCTCCAGTAATCGGACATCACCATTCATACATGTTTGTAACACGTCGTGCAGAAAGTACGAAATTACCTCTTAAGATTATACAGCATTGATATCATGGAACTTTGGCCTTCCAATTATCATGGGCATACCACAACCTGTTGATTCCCTT-CAA-GGAGCAACCTCTATCTTGAA-CCAGA-AGTGATTAGATCAT-GCACTGGAGAAAACAGAGTTGCCTCCCAACAGCTCAGTATCTTTCAATAAACTTTAATAAAT-TTGACAGTGTCATATACCATCCAAGTGCTGAACTGGGTCATGTTGCTTTGGTAGACGAAAGCTCTTGAGTAATTTGATAAGTTCATACGTCCTTGCATGATGACCCAACCGGAGGCATAACTCCAAAGGGGTAAATCCATCTTGAGTTTTCAAAGTTCTATCAACACCCTTTATTAAGAGTAGCTTAACGATATCAGTTCTCTGTGTTTGCACAGCTAGATGCAAAGGTGTCCATCCATAATCATCTGGCCGATTAATGTCAACATTGTACAGCAAGAGAGTCTTTATGGTCTGACTGCATGCTGTTTGGACGGCATAATGCATTAGGGTTGCACCATCTTTATCGTGGATGAATGGATNTCATGAATTCCTTAGGAGATAGTTGATAATGGCATGCTTCTTGGAAAGAATTGCTTTATGAATAGCTGGTAAACCATCCTTAACAAGGGCATTCACATTAATANTATGTTTTAGAAGANTGTCCAACAGATAGNAATCTCCCCCTTGTCCCG]
[+] EMBL CB620537 [TAGTTGTATAACTTGTATACGTAGTATTTCTCCCGTGGGTCCAATTAATGGTCCATATGTTAGGTCTCGACTTTGATTTTCAAGCACCAATGCCCACGGAGTGCACAGTATATATCAATTATATGCATGCAGAAACTTACAGGATTGCATGGACGGGGTGCAGCATTCAGCATTCTCATGCCTGCTAATTGCTGTTCCAGCAATCCTTTTTTAGGGCAGTGCCATTGCTGCTCCAGTAATCGGACATCACCATTCATACATGTTTGTAACACGTCGTGCAGAAAGTACGAAATTACCTCTTAAGATTATACAGCATTGATATCATGGAACTTTGGCCTTCCAATTATCATGGGCATACCACAACCTGTTGATTCCCTT CAA GGAGCAACCTCTATCTTGAA CCAGA AGTGATTAGATCAT GCACTGGAGAAAACAGAGTTGCCTCCCAACAGCTCAGTATCTTTCAATAAACTTTAATAAAT TTGACAGTGTCATATACCATCCAAGTGCTGAACTGGGTCATGTTGCTTTGGTAGACGAAAGCTCTTGAGTAATTTGATAAGTTCATACGTCCTTGCATGATGACCCAACCGGAGGCATAACTCCAAAGGGGTAAATCCATCTTGAGTTTTCAAAGTTCTATCAACACCCTTTATTAAGAGTAGCTTAACGATATCAGTTCTCTGTGTTTGCACAGCTAGATGCAAAGGTGTCCATCCATAATCATCTGGCCGATTAATGTCAACATTGTACAGCAAGAGAGTCTTTATGGTCTGACTGCATGCTGTTTGGACGGCATAATGCATTAGGGTTGCACCATCTTTATCGTGGATG ]
[-] EMBL CA764900 [ gnTGATTCCNTTCCAAGGGAGCAGNCTCTATCTTGAACCCANANGGTTATTAGNTCATGGGGCTGGAGAAAACAGAGTTGCCTCNCANCAGCTCAGTATCTTTCAATAAACTTTAATAAATATTGACAGTGTCATATACCATCCAAGTGCTGAACTGGGTCATGNTGCTTTGGTAGACGAAAGCTCTTGAGTAATTTGATAAGTTCATACGTCCTTGCATGATGACCCAACCGGAGGCATAACTCCAAAGGGGTANATCCATCTTGAGTTTTCAAAGTTCTATCAACACCCTNTATTAAGAGTAGCTTACCGATATCAGTTCTCTGTGTTTGCACAGCTAGANGCAAAGGTGTCCATCCATAATCATCTGGCCGATTAATGTCAACATTGTACAGCAAGAGAGTCTTTATGGTCTGACTGCATGCTGTTTGGCCGGCATAATGCATTAGGGTTGCACCATCTTTATCGTGGATGAATGGATNTCATGAATTCCTTAGGAGATAGTTGATAATGGCATGCTTCTTGGAAAGAATTGCTTTATGAATAGCTGGTAAACCATCCTTAACAAGGGCATTCACATTAATANTATGTTTTAGAAGANTGTCCAACAGATAGNAATCTCCCCCTTGTCCCG]
consensusID : consensus_6535#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 767 fasta sequence
[CTTCACATGTGGGGAGAAAACTTTTATCTGTTCTGCCGATGCAGTGAGAATTTACACTAACAATCGGGACGTGAAGGAGAAACAAAATAATTCTTGATTAATATTTGTATCCAAGATGCTAGGAATATCTAAGATTAATGGGGTAGAAAGAGAAAATAATACTACTGGAAATGTAAAAGTATGCAGGTCACGCTAAACTTATATTTGGCATTAATAATTTGGGTATCTTGAGTTTTTTATGGCTAACCTCTTAAGATTATACAGCATTGATATCATGGAACTTTGGCCTTCCAATTATCATGGGCATACCACAACCTGTTGATTCCCTTCAAGGAGCAACCTCTATCTTGAACCAGAAGTGATTAGATCATGCACTGGAGAAAACAGAGTTGCCTCCCAACAGCTCAGTATCTTTCAATAAACTTTAATAAATTTGACAGTGTCATATACCATCCAAGTGCTGAACTGGGTCATGTTGCTTTGGTAGACGAAAGCTCTTGAGTAATTTGATAAGTTCATACGTCCTTGCATGATGACCCAACCGGAGGCATAACTCCAAAGGGGTAAATCCATCTTGAGTTTTCAAAGTTCTATCAGCACCCTTTATTAAGAGTAGCTTAACGATATCAGTTCTCTGTGTTTGCACAGCTAGATGCAAAGGTGTCCATCCATAATCATCTGGCCGATTAATGTCAACATTGTACAGCAAGAGAGTCTTTATGGTCTGACTGCATGCTGTTTGGACTGCATAATGCATTAAGGTTGCA]
[+] EMBL CB642997 [CTTCACATGTGGGGAGAAAACTTTTATCTGTTCTGCCGATGCAGTGAGAATTTACACTAACAATCGGGACGTGAAGGAGAAACAAAATAATTCTTGATTAATATTTGTATCCAAGATGCTAGGAATATCTAAGATTAATGGGGTAGAAAGAGAAAATAATACTACTGGAAATGTAAAAGTATGCAGGTCACGCTAAACTTATATTTGGCATTAATAATTTGGGTATCTTGAGTTTTTTATGGCTAACCTCTTAAGATTATACAGCATTGATATCATGGAACTTTGGCCTTCCAATTATCATGGGCATACCACAACCTGTTGATTCCCTTCAAGGAGCAACCTCTATCTTGAACCAGAAGTGATTAGATCATGCACTGGAGAAAACAGAGTTGCCTCCCAACAGCTCAGTATCTTTCAATAAACTTTAATAAATTTGACAGTGTCATATACCATCCAAGTGCTGAACTGGGTCATGTTGCTTTGGTAGACGAAAGCTCTTGAGTAATTTGATAAGTTCATACGTCCTTGCATGATGACCCAACCGGAGGCATAACTCCAAAGGGGTAAATCCATCTTGAGTTTTCAAAGTTCTATCAGCACCCTTTATTAAGAGTAGCTTAACGATATCAGTTCTCTGTGTTTGCACAGCTAGATGCAAAGGTGTCCATCCATAATCATCTGGCCGATTAATGTCAACATTGTACAGCAAGAGAGTCTTTATGGTCTGACTGCATGCTGTTTGGACTGCATAATGCATTAAGGTTGCA]
consensusID : consensus_6535#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 417 fasta sequence
[CAGGGCCCCACACAGTTCCCCACTGCATNATCCACAGTGCGCGTGCTATAATCCTTCAGAGGAGGNTTCAGCCCATTTACATATAACCTCCACAGTATTACCCNCATACTTATTGAAATGCCCCACAACATACTAAGTTAGCGTGACCCCTGCCATACTTTTTACATTTCCAGTAGTACTTATTTTCTCTTTCTACCCCCATTAATCTTAGATATTCCTAGACATCTTGCGATTACAAATATTATATCCAGATACTTATTTTGTTTCTCCTTCATGTCCCGATTGTTTAGTGTAAATTCTTACTGCATCGGCAGAACAGATATAATTTCTCACCACATGTGAAGTGGTAAAAAGTGTATGTATCAGTATATTTTGATATAAAATTTGTTGAAAATGCACAGGACGTCAAAAAAAAAA]
[+] EMBL BQ908779 [CAGGGCCCCACACAGTTCCCCACTGCATNATCCACAGTGCGCGTGCTATAATCCTTCAGAGGAGGNTTCAGCCCATTTACATATAACCTCCACAGTATTACCCNCATACTTATTGAAATGCCCCACAACATACTAAGTTAGCGTGACCCCTGCCATACTTTTTACATTTCCAGTAGTACTTATTTTCTCTTTCTACCCCCATTAATCTTAGATATTCCTAGACATCTTGCGATTACAAATATTATATCCAGATACTTATTTTGTTTCTCCTTCATGTCCCGATTGTTTAGTGTAAATTCTTACTGCATCGGCAGAACAGATATAATTTCTCACCACATGTGAAGTGGTAAAAAGTGTATGTATCAGTATATTTTGATATAAAATTTGTTGAAAATGCACAGGACGTCAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6535#0 TAGTTGTATAACTTGTATACGTAGTATTTCTCCCGTGGGTCCAATTAATGGTCCATATGT 60
consensus_6535#1 --------------------------------------------------CTTCACATGT 10
consensus_6535#2 ------------------------------------------------------------
consensus_6535#0 TAGGTCTCGACTTTGATTTTCAAGCACCAATGCCCACGGAGTGCACAGTATATATCAATT 120
consensus_6535#1 GGGGAGAAAACTTTTATCTGTTC-TGCCGATGCAGTGAGAATTTACACTAACAATCGGG- 68
consensus_6535#2 ------------------------------------------------------------
consensus_6535#0 ATATGCATGCAGAAACTTACAGGATTGCATGGACGGGGTGCAGCATTCAGCATTCTCATG 180
consensus_6535#1 ACGTGAAGG-AGAAAC--AAAATAATTCTTGATTAATAT-TTGTATCCAAGATGCTAGGA 124
consensus_6535#2 ------------------------------------------------------------
consensus_6535#0 CCTGCTAA--TTGCTGTTCCAGCAATCCTTTTTTAGGGCAGTGCCATTGCTGCTCCAGTA 238
consensus_6535#1 ATATCTAAGATTAATGGGGTAGAAA------GAGAAAATAATACTACTGGAAATGTAAAA 178
consensus_6535#2 ------------------------------------------------------------
consensus_6535#0 AT-CGGACATCACCATTCATACATGTTTGTAACACGTCGTGCAGAAAGTACGAAATT--- 294
consensus_6535#1 GTATGCAGGTCACGCTAAACTTATATTTGGCATTAATAATTTGGGTATCTTGAGTTTTTT 238
consensus_6535#2 ------------------------------------------------------------
consensus_6535#0 -------ACCTCTTAAGATTATACAGCATTGATATCATGGAACTTTGGCCTTCCAATTAT 347
consensus_6535#1 ATGGCTAACCTCTTAAGATTATACAGCATTGATATCATGGAACTTTGGCCTTCCAATTAT 298
consensus_6535#2 ------------------------------------------------------------
consensus_6535#0 CATGGGCATACCACAACCTGTTGATTCCCTTCAAGGAGCAACCTCTATCTTGAACCAGAA 407
consensus_6535#1 CATGGGCATACCACAACCTGTTGATTCCCTTCAAGGAGCAACCTCTATCTTGAACCAGAA 358
consensus_6535#2 ------------------------------------------CAGGGCCCCACACAGTTC 18
* * **
consensus_6535#0 GTGATTAGATCATGCACTGGAGAAAACAGAGTTGCCTCCCAACAGCTCAGTATCTTTCAA 467
consensus_6535#1 GTGATTAGATCATGCACTGGAGAAAACAGAGTTGCCTCCCAACAGCTCAGTATCTTTCAA 418
consensus_6535#2 CCCACTGCATNATCCAC-AGTGCGCGTGCTATAATCCTTCAGAGG--AGGNTTCAGCCCA 75
* * ** ** *** * * * * ** * * ** * *
consensus_6535#0 TAAACTTTAATAAATTTGACAGTGTCATATACCATCCAAGTGCTGAACTGGGTCATGTTG 527
consensus_6535#1 TAAACTTTAATAAATTTGACAGTGTCATATACCATCCAAGTGCTGAACTGGGTCATGTTG 478
consensus_6535#2 TTTACAT--ATAACCTCCACAGTATTAC---CCNCATACTTATTGAAATGCCCCACAACA 130
* ** * **** * ***** * * ** * * **** ** **
consensus_6535#0 CTTTG-GTAGACGAAAGCTCTTGAGTAATTTG-ATAAGTTCATACGTCCTTGCATGATGA 585
consensus_6535#1 CTTTG-GTAGACGAAAGCTCTTGAGTAATTTG-ATAAGTTCATACGTCCTTGCATGATGA 536
consensus_6535#2 TACTAAGTTAGCGTGACCCCTGCCATACTTTTTACATTTCCAGTAGTACTTATTTTCTCT 190
* ** ** * * ** ** *** * * * ** ** *** * *
consensus_6535#0 CCCAACCGGAGGCATAACTCCAAAGGGGTAAATCCATCTTGAGTTTTCAAA-GTTCTATC 644
consensus_6535#1 CCCAACCGGAGGCATAACTCCAAAGGGGTAAATCCATCTTGAGTTTTCAAA-GTTCTATC 595
consensus_6535#2 TTCTACCCCCA--TTAATCTTAGATATTCCTAGACATCTTGCGATTACAAATATTATATC 248
* *** *** * * * ******* * ** **** ** ****
consensus_6535#0 AACACCCTTTATTAAGAGTAGCTTAACGATATCAGTTCTCTGTGTTTGCACAGCTAGATG 704
consensus_6535#1 AGCACCCTTTATTAAGAGTAGCTTAACGATATCAGTTCTCTGTGTTTGCACAGCTAGATG 655
consensus_6535#2 CAGATACTTATTTTGTTTCTCCTTCATG-TCCCGATTGTTTA-GTGTAAATT-CTTACTG 305
* *** ** *** * * * * ** * * ** * * ** **
consensus_6535#0 CAAAGGT-GTCCATCCATAATCATCTGGCCGATTAATGTCAA-CATTGTACAGCAAGAGA 762
consensus_6535#1 CAAAGGT-GTCCATCCATAATCATCTGGCCGATTAATGTCAA-CATTGTACAGCAAGAGA 713
consensus_6535#2 CATCGGCAGAACAGATATAATT-TCTCACCAC---ATGTGAAGTGGTAAAAAGTGTATGT 361
** ** * ** ***** *** ** **** ** * * ** *
consensus_6535#0 GTCTTTATGGTCTGAC-TGCATGCTGTTTGGACGGCATAATGCATTAGGGTTGCACCATC 821
consensus_6535#1 GTCTTTATGGTCTGAC-TGCATGCTGTTTGGACTGCATAATGCATTAAGGTTGCA----- 767
consensus_6535#2 ATCAGTATATTTTGATATAAAATTTGTTGAAAATGCACAGGACGTCAAAAAAAAAA---- 417
** *** * *** * * **** * *** * * * * *
consensus_6535#0 TTTATCGTGGATGAATGGATNTCATGAATTCCTTAGGAGATAGTTGATAATGGCATGCTT 881
consensus_6535#1 ------------------------------------------------------------
consensus_6535#2 ------------------------------------------------------------
consensus_6535#0 CTTGGAAAGAATTGCTTTATGAATAGCTGGTAAACCATCCTTAACAAGGGCATTCACATT 941
consensus_6535#1 ------------------------------------------------------------
consensus_6535#2 ------------------------------------------------------------
consensus_6535#0 AATANTATGTTTTAGAAGANTGTCCAACAGATAGNAATCTCCCCCTTGTCCCG 994
consensus_6535#1 -----------------------------------------------------
consensus_6535#2 -----------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||