cluster # 6687

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Oryza sativa
cluster # 6687 cluster # 6687 Sequences # 4 consensus # 1
see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6687#0 length = 827 sequences # 4
consensusID : consensus_6687#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 827
fasta sequence
                              [TTTTTTTTTTGCCAAAATGNACTTGATTGAAAGCAGCAAATAGCAT-GGGGGAAGTGAGTTTATCTGCTCCCTT-CATTGTGGTTAATGCA-TCATACAGGAACAGCAGTTTAGGCGCTACTACAAAACAA-CCCAGTTGCACTTTCACA-GGTGAAAACCCAGGTGAACATTCACACGCAAGGGTACCAAACATGCCAGC-AATGTCTGC-ACAAAACGAGCTCCAGAGTAGTTCTCCAATGCTGTAAGCAGGGCATTCTACAGGCCAAGACCGACGGTCCGGCCGTCTCTCCGGCGCAGGCCTGCAATGTAATGCTTCTCCAGGTACGGTGT-CCAGCT-CCTCCT-G-CT-TCT-TGGCATCCGACGAGCTCCCGT-CCT-T-GCCGTCGACCTT-GCT-CTCCTGGGCTGAGCTGCTGCT-GC-TGCTCTT-CACTCCCATGAGTTTGTTGAATTTCTCTT-GGCGCTCCC-GGTCAGGAAACAGATTCGAGTCCCAGTGAGCGCTTGACTCTGGAGGATTACTCTTTTTGTTGCCCCAAAGCAGTTTTTTCTTCTGGTCTGTGGACAGGCGCCCAGCACCAACTCCAAATCCTACAAGGTTTTTGTTCACTAATTCGGCAGCTTTCATAGCTGCAACTTTTGCTGCATCAACACTGTTTACAGTAAATCCTGATGTAGGGTTATCCAAGACTACACCATTCGAACAGTCAAGTGAAGGTTTCTTCCCAGAAGTGTCTGCATTATCATTAAGTTGTGCATTTTCAAAATCTGGCCCAACTGAACTAAATAAACTTCTCTTCTCCCTAGTTCCCACCTCAGGTTCAGCTACGGAACTCATCTTTTCA]

[-] EMBL BQ906876             [TTTTTTTTTTGCCAAAATGNACTTGATTGAAAG AG AAATAG AT GGGGGAAGTGAGTTTATCTGCTCCCTTACATTGTGGTTAATGCA TCATACAGGAACAGCAGTTTAGGCGCTACTACAAAACAA CCCAGTTGCACTTTCACA GGTGAAAACCCAGGTGAACATTCACACGCAAGGGTACCAAACATGCCAGC AATGTCTGC ACAAAACGAGCTCCAGAGTAGTTCTCCAATGCTGTAAGCAGGGCATTCTACAGGCCAAGACCGACGGTCCGGCCGTCTCTCCGGCGCAGGCCTGCAATGTAATGCTTCTCCAGGTACGGTGTACCAGCTACCTCCTAGACTATCTATGGCATCCGACNAGCTCCCGTACCTAT GCCGTCGACCTT GCTACTCCTGGGCTGAGCTGCTGCTAGCATGCTCTTACACTCCCA                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CB620950             [                  tcctttttTTGAAAGCAGCAAATAGCAT GGGGGAAGTGAGTTCATCTGCTCCCTT CATTGTGGTTAATGCA TCATACAGGAACAGCAGTTTAGGCGCTACTACAAAACAA CCCAGTTGCACTTTCACA GGTGAAAACCCAGGTGAACATTCACACGCAAGGGTACCAAACATGCCAGC AATGTCTGC ACAAAACGAGCTCCAGAGTAGTTCTCCAATGCTGTAAGCAGGGCATTCTACAGGCCAAGACCGACGGTCCGGCCGTCTCTCCGGCGCAGGCCTGCAATGTAATGCTTCTCCAGGT CGGTGT CCAGCT CCTCCT G CT TCT TGGCATCCGACGAGCTCCCGT CCT T GCCGTCGACCTT GCT CTCCTGGGCTGAGCTGCTGCT GC TGCTCTT CACTCCCATGAGTTTGTTGAATTTCTCTT GGCGCTCCC GGTCAGGAAACAGATTCGAGTCCCAGTGAGCGCTTGACTCTGGAGGATTACTCTTTTTGTTGCCCCAAAGCAGTTTTTTCTTCTGGTCTGTGGACAGGCGCCCAGCACCAACTCCAAATCCTACAAGGTTTTTGTTCACTAATTCGGCAGCTTTCATAGCTGCAACTTTTGCTGCATCAACACTGTTTACAGTAAATCCTGATGTAGGGTTATCCAAGACTACACCATTCGAACAGTCAAGTGAAGGTTTCTTCCCAGAAGTGTCTGCATTATCATTAAGTTGTGCATTTTCAAAATCTGGCCCAACTGAACTAAATAAACTTCTCTTCTCCCTAGTTCCCACCTCAGGTTCAGCTACGGAACTCATCTTTTCA]
[+] EMBL CB620917             [                                     AAATAGCAT GGGGGAAGTGAGTTTATCTGCTCCCTT CATTGTGGTTAATGCA TCATACAGGAACAGCAGTTTAGGCGCTACTACAAAACAA CCCAGTTGCACTTTCACA GGTGAAAACCCAGGTGAACATTCACACGCAAGGGTACCAAACATGCCAGC AATGTCTGC ACAAAACGAGCTCCAGAGTAGTTCTCCAATGCTGTAAGCAGGGCATTCTACAGGCCAAGACCGACGGTCCGGCCGTCTCTCCGGCGCAGGCCTGCAATGTAATGCTTCTCCAGGT CGGTGT CCAGCT CCTCCT G CT TCT TGGCATCCGACGAGCTCCCGT CCT T GCCGTCGACCTT GCT CTCCTGGGCTGAGCTGCTGCT GC TGCTCTT CACTCCCATGAGTTTGTTGAATTTCTCTT GGCGCTCCC GGTCAGGAAACAGATTCGAGTCCCAGTGAGCGCTTGACTCTGGAGGATTACTCTTTTTGTTGCCCCAAAGCAGTTTTTTCTTCTGGTCTGTGGACAGGCGCCCAGCACCAACTCCAAATCCTACAAGGTTTTTGTTCACTAATTCGGCAGCTTTCATAGCTGCAACTTTTGCTGCATCAACACTGTTTACAGTAAATCCTGATGTAGGGTTATCCAAGACTACACCATTCGAACAGTCAAGTGAAGGTTTCTTCCCAGAAGTGTCTGCATTATCATTAAGTTGTGCATTTTCAAAATCTGGCCCAACTGAACTAAATAA                                                       ]
[-] EMBL BM419203             [                                ttttttttaAGCCTGGGGGGGGGTGAGTTTATCTGGTCCCTT CATTGGGGTTAATGCACTCATACAGGAACAGCAGTTTAGGCGCTACTACAAAACAACCCCAGTTGCACTTTCACAGGGTGAAAACCCAGGTGAACATTCACACGCAAGGGTACCAAACATGCCAGCGAATGTCTGCGACAAAACGAGCTCCAGAGTAGTTCTCCAATGCTGTAAGCAGGGCATTCTACAGGCCAAGAACGACGGTCCGGCCGTCTCTCCGGCGCAGGCCTGCAATGTAATGCTTCTCCAGGTACGGTGT CCAGCT CCTCCTGG CT TCT TGGCATCCGACGAGCTCCCGT CCT TGGCCGTCGACCTTGGCT CTCCTGGGCTGAGCTGCTGCT GC TGCTCTT CACTCCCATGAGTTTGTTGAATTTCTCTTGGGCGCTCCCGGGTCAGGAAACAGATTCGAGTCCCAGTGAGCGCTTGACTCTGGAGGATTACTCTTTTGGTTGCCCCAAAGCAGTT                                                                                                                                                                                                                                                                                                           ]




>consensus_6687#0
TTTTTTTTTTGCCAAAATGNACTTGATTGAAAGCAGCAAATAGCATGGGGGAAGTGAGTT
TATCTGCTCCCTTCATTGTGGTTAATGCATCATACAGGAACAGCAGTTTAGGCGCTACTA
CAAAACAACCCAGTTGCACTTTCACAGGTGAAAACCCAGGTGAACATTCACACGCAAGGG
TACCAAACATGCCAGCAATGTCTGCACAAAACGAGCTCCAGAGTAGTTCTCCAATGCTGT
AAGCAGGGCATTCTACAGGCCAAGACCGACGGTCCGGCCGTCTCTCCGGCGCAGGCCTGC
AATGTAATGCTTCTCCAGGTACGGTGTCCAGCTCCTCCTGCTTCTTGGCATCCGACGAGC
TCCCGTCCTTGCCGTCGACCTTGCTCTCCTGGGCTGAGCTGCTGCTGCTGCTCTTCACTC
CCATGAGTTTGTTGAATTTCTCTTGGCGCTCCCGGTCAGGAAACAGATTCGAGTCCCAGT
GAGCGCTTGACTCTGGAGGATTACTCTTTTTGTTGCCCCAAAGCAGTTTTTTCTTCTGGT
CTGTGGACAGGCGCCCAGCACCAACTCCAAATCCTACAAGGTTTTTGTTCACTAATTCGG
CAGCTTTCATAGCTGCAACTTTTGCTGCATCAACACTGTTTACAGTAAATCCTGATGTAG
GGTTATCCAAGACTACACCATTCGAACAGTCAAGTGAAGGTTTCTTCCCAGAAGTGTCTG
CATTATCATTAAGTTGTGCATTTTCAAAATCTGGCCCAACTGAACTAAATAAACTTCTCT
TCTCCCTAGTTCCCACCTCAGGTTCAGCTACGGAACTCATCTTTTCA
clustalw multiple alignements is not computed in this case