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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6694#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1608 fasta sequence
[CGACCTTCGGTGCGGCGGCTCAACGAGGCGATGGACGGCGGCGGCGGAGGCCGGCGGCCTCGTGCCGTGTTCATGGCCTTCGGCACCCGCGGCGACGTCTTCCCCATAGCTGCACTTGCTGCAGCTTTTGCGCAGGACCAACGACAGTATGGTGTAGTGTTCATCACACATTCAGCACATCAGAGCTTGTCGACACATCTAGCAGACTGTAATGTTAGATATATGCCTGTGTCAAGCCCACCTGTCCTTGCTGCCGAACAGCTCGAGAGCATCTCATAGGAAAAAGACCATTCAAGTGGAGCACAGGAGAGAGTGCTTGTCTGCCGTCGAAAATGTTTTTGGAAATGACATGAGCACTCATGGTGATTTCATTGTGATCAACTTCTTTGCGTTGGAAGGTTGGCATCTTGCAGAATTGTTCCAAGTTAAGTGCATCATTGCTGCTCCCTATTTTGTTCCATACAGTGCACCTGCATCATTTGAACGCCAATTTAAACAAAGTCTTCCTCTTCTATACAAGTACTTTCAAGAAGCTCCCCTGAACATGGTTTGCTGGACAGACATTACCCACTGGATGTGGGCATTGTTCATGGAAAGTTGGGGATCATGGAGAAATGATAGTCTAAATCTTAGCCCAATTCCTTTTACAGATCCAGTAACAAATCTTCCTCTGTGGTATATGCGAGAAGAATCCCCATTGTTGCTGTATGGTTTCAGCAAGGAAATTGTTGAGTGCCCAGCATGGGTTTTCTTAGAAATCCAAAAGCATTTCTGATGGTGCTTAAAGCTGTCATAGAGAAAACAGATTACAGATTTATCCTTTTCTCATCTGGATACCAGCCATTAGATTCTGCAATACAATATTTTGCTCCTTCAGTAGCAGAATCAAGTGAGTATCAGGCATCTGCTCTTCATTGTGACAGCAATCTCCTTTTTAATGGTCGACTCTTTTGCTTTTCTGGATCAATACCATACAGTTGGCTGTTTCCTAAATGTGCAGTTGCTATTCACCATGCTGGCAGTGGATCTACAGCTGCAGCACTTTTTGCCGGCATCCCTCAGATTTCATGTCCTTTCCTGCTGGATCAGTTTTACTGGGCAGAAAGGCTACACTGGCTAGGAGTGGCACCTGAGCCCCTAGGAAGACAACATCTAATTCCGGATACTGACAATGCCTCAAGCATCAACAGTGCTGCAGATATGCTGATTGGAGCTATCAAATCGGCATTATCACCTGAAATTAAAGCTCAGGCAACCAGAATCGCTAACAAACTTTCTTCTGAGGACGGGATTGGAGAAGCCCTCAGGATCTTGAAAGAGAGTTTTGCCCCAAATTGAAAGTTAAGTGATAAGAAG-CA-GGGGATACGACGAACCAATTGCACGTAAAATAGTTATGTGCTTTGAAGTTTGAATTAGCATTTGTCACTCCAATTGATTTATTATGCGCCGTATGAACTGGAAAACAG-CCTTGGTCACTAGTATTTTTCTTGTTTGGAATGGAATGGAATGGCAAAACGGCAATATGATGAACTTATGCAGAGA----CTTGTGTTGTAGATAGAGTAATCATGAATAAAGAAAACCAAAACCATG-TATATGATAAAAAAAAAA]
[+] EMBL AK073717 [CGACCTTCGGTGCGGCGGCTCAACGAGGCGATGGACGGCGGCGGCGGAGGCCGGCGGCCTCGTGCCGTGTTCATGGCCTTCGGCACCCGCGGCGACGTCTTCCCCATAGCTGCACTTGCTGCAGCTTTTGCGCAGGACCAACGACAGTATGGTGTAGTGTTCATCACACATTCAGCACATCAGAGCTTGTCGACACATCTAGCAGACTGTAATGTTAGATATATGCCTGTGTCAAGCCCACCTGTCCTTGCTGCCGAACAGCTCGAGAGCATCTCATAGGAAAAAGACCATTCAAGTGGAGCACAGGAGAGAGTGCTTGTCTGCCGTCGAAAATGTTTTTGGAAATGACATGAGCACTCATGGTGATTTCATTGTGATCAACTTCTTTGCGTTGGAAGGTTGGCATCTTGCAGAATTGTTCCAAGTTAAGTGCATCATTGCTGCTCCCTATTTTGTTCCATACAGTGCACCTGCATCATTTGAACGCCAATTTAAACAAAGTCTTCCTCTTCTATACAAGTACTTTCAAGAAGCTCCCCTGAACATGGTTTGCTGGACAGACATTACCCACTGGATGTGGGCATTGTTCATGGAAAGTTGGGGATCATGGAGAAATGATAGTCTAAATCTTAGCCCAATTCCTTTTACAGATCCAGTAACAAATCTTCCTCTGTGGTATATGCGAGAAGAATCCCCATTGTTGCTGTATGGTTTCAGCAAGGAAATTGTTGAGTGCCCAGCATGGGTTTTCTTAGAAATCCAAAAGCATTTCTGATGGTGCTTAAAGCTGTCATAGAGAAAACAGATTACAGATTTATCCTTTTCTCATCTGGATACCAGCCATTAGATTCTGCAATACAATATTTTGCTCCTTCAGTAGCAGAATCAAGTGAGTATCAGGCATCTGCTCTTCATTGTGACAGCAATCTCCTTTTTAATGGTCGACTCTTTTGCTTTTCTGGATCAATACCATACAGTTGGCTGTTTCCTAAATGTGCAGTTGCTATTCACCATGCTGGCAGTGGATCTACAGCTGCAGCACTTTTTGCCGGCATCCCTCAGATTTCATGTCCTTTCCTGCTGGATCAGTTTTACTGGGCAGAAAGGCTACACTGGCTAGGAGTGGCACCTGAGCCCCTAGGAAGACAACATCTAATTCCGGATACTGACAATGCCTCAAGCATCAACAGTGCTGCAGATATGCTGATTGGAGCTATCAAATCGGCATTATCACCTGAAATTAAAGCTCAGGCAACCAGAATCGCTAACAAACTTTCTTCTGAGGACGGGATTGGAGAAGCCCTCAGGATCTTGAAAGAGAGTTTTGCCCCAAATTGAAAGTTAAGTGATAAGAAG CA GGGGATACGACGAACCAATTGCACGTAAAATAGTTATGTGCTTTGAAGTTTGAATTAGCATTTGTCACTCCAATTGATTTATTATGCGCCGTATGAACTGGAAAACAG CCTTGGTCACTAGTATTTTTCTTGTTTGGAATGGAATGGAATGGCAAAACGGCAATATGATGAACTTATGCAGAGA CTTGTGTTGTAGATAGAGTAATCATGAATAAAGAAAACCAAAACCATG ]
[-] EMBL CB677597 [ AGAAAACAGATTACAGATTTATCCTTTTCTCATCTGGATACCAGCCATTAGATTCTGCAATACAATATTTTGCTCCTTCAGTAGCAGAATCAAGTGAGTATCAGGCATCTGCTCTTCATTGTGACAGCAATCTCCTTTTTAATGGTCGACTCTTTTGCTTTTCTGGATCAATACCATACAGTTGGCTGTTTCCTAAATGTGCAGTTGCTATTCACCATGCTGGCAGTGGATCTACAGCTGCAGCACTTTTTGCCGGCATCCCTCAGATTTCATGTCCTTTCCTGCTGGATCAGTTTTACTGGGCAGAAAGGCTACACTGGCTAGGAGTGGCACCTGAGCCCCTAGGAAGACAACATCTAATTCCGGATACTGACAATGCCTCAAGCATCAACAGTGCTGCAGATATGCTGATTGGAGCTATCAAATCGGCATTATCACCTGAAATTAAAGCTCAGGCAACCAGAATCGCTAACAAACTTTCTTCTGAGGACGGGATTGGAGAAGCCCTCAGGATCTTGAAAGAGAGTTTTGCCCCAAATTGAAAGTTAAGTGATAAGAAG CA GGGGATACGACGAACCAATTGCACGTAAAATAGTTATGTGCTTTGAAGTTTGAATTAGCATTTGTCACTCCAATTGATTTATTATGCGCCGTATGAACTGGAAAACAG CCTTGGTCACTAGTATTTTTCTTGTTTGGAATGGAATGGAATGGCAAAACGGCAATATGATGAACTTATGCAGAGA CTTGTGTTGTAGATAGAGTAATCATGAATAAAGAAAACCAAAACCATG ]
[+] EMBL BM418678 [ AAAGGCTACACTGGCTAGGAGTGGCACCTGAGCCCCTAGGAAGACAACATCTAATTCCGGATACTGACAATGCCTCAAGCATCAACAGTGCTGCAGATATGCTGATTGGAGCTATCNAATCGGCATTATCACCTGAAATTAAAGCTCAGGCAACCAGAATCGCTAACAAACTTTCTTCTGAGGACGGGATTGGAGAAGCCCTCAGGATCTTGAAAGAGAGTTTTGCCCCNAATTGAAAGTTAAGTGATAAGAAGCCACGGGGATACGACGAACCCATTGCACGTAAAATAGTTATGTGCTTTGAAGTTTGAATTAGCATTTGTCACTCCCATTGATTTATTATGCGCCGTATGAACTGGAAAACAGCCCTTGGTCACTAGTATTTTTCTTGTTTGGAATGGAATGGAATGGC AAACGGCAATATGATGAATTTATGCAGAGACTTCCTTGTGTTGTAGATAGAGTAATCATGAATAAAGAAAACC CCACCCTGATATATGATAAAAAAAAAA]
consensusID : consensus_6694#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 786 fasta sequence
[ACCTTCGGTGCGGCGGCTCAACGAGGCGATGGACGGCGGCGGCGGAGGCCGGCGGCCTCGTGCCGTGTTCATGGCCTTCGGCACCCGCGGCGACGTCTTCCCCATAGCTGCACTTGCTGCAGCTTTTGCGCAGGACCAACGACAGTATGGTGTAGTGTTCATCACACATTCAGCACATCAGAGCTTGTCGACACATCTAGCAGACTGTAATGTTAGATATATGCCTGTGTCAAGCCCACCTGTCCTTGCTGCCGAACAGCTCGAGAGCATCTCATAGGAAAAAGACCATTCAAGTGGAGCACAGGAGAGAGTGCTTGTCTGCCGTCGAAAATGTTTTTGGAAATGACATGAGCACTCATGGTGATTTCATTGTGATCAACTTCTTTGCGTTGGAAGGTTGGCATCTTGCAGAATTGTTCCAAGTTAAGTGCATCATTGCTGCTCCCTATTTTGTTCCATACAGTGCACCTGCATCATTTGAACGCCAATTTAAACAAAGTCTTCCTCTTCTATACAAGTACTTTCAAGAAGCTCCCCTGAACATGGTTTGCTGGACAGACATTACCCACTGGATGTGGGCATTGTTCATGGAAAGTTGGGGATCATGGAGAAATGATAGTCTAAATCTTAGCCCAATTCCTTTTACAGATCCAGTAACAAATCTTCCTCTGTGGTATATGCGAGAAGAATCCCCATTGTTGCTGTATGGTTTCAGCAAGGAAATTGTTGAGTGCCCAGGATATTGGCCATTCAGCGCTCATGTTTGTGGTTTTTGGTTTCTTCCTA]
[+] EMBL CB677596 [ACCTTCGGTGCGGCGGCTCAACGAGGCGATGGACGGCGGCGGCGGAGGCCGGCGGCCTCGTGCCGTGTTCATGGCCTTCGGCACCCGCGGCGACGTCTTCCCCATAGCTGCACTTGCTGCAGCTTTTGCGCAGGACCAACGACAGTATGGTGTAGTGTTCATCACACATTCAGCACATCAGAGCTTGTCGACACATCTAGCAGACTGTAATGTTAGATATATGCCTGTGTCAAGCCCACCTGTCCTTGCTGCCGAACAGCTCGAGAGCATCTCATAGGAAAAAGACCATTCAAGTGGAGCACAGGAGAGAGTGCTTGTCTGCCGTCGAAAATGTTTTTGGAAATGACATGAGCACTCATGGTGATTTCATTGTGATCAACTTCTTTGCGTTGGAAGGTTGGCATCTTGCAGAATTGTTCCAAGTTAAGTGCATCATTGCTGCTCCCTATTTTGTTCCATACAGTGCACCTGCATCATTTGAACGCCAATTTAAACAAAGTCTTCCTCTTCTATACAAGTACTTTCAAGAAGCTCCCCTGAACATGGTTTGCTGGACAGACATTACCCACTGGATGTGGGCATTGTTCATGGAAAGTTGGGGATCATGGAGAAATGATAGTCTAAATCTTAGCCCAATTCCTTTTACAGATCCAGTAACAAATCTTCCTCTGTGGTATATGCGAGAAGAATCCCCATTGTTGCTGTATGGTTTCAGCAAGGAAATTGTTGAGTGCCCAGGATATTGGCCATTCAGCGCTCATGTTTGTGGTTTTTGGTTTCTTCCTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6694#0 CGACCTTCGGTGCGGCGGCTCAACGAGGCGATGGACGGCGGCGGCGGAGGCCGGCGGCCT 60
consensus_6694#1 --ACCTTCGGTGCGGCGGCTCAACGAGGCGATGGACGGCGGCGGCGGAGGCCGGCGGCCT 58
**********************************************************
consensus_6694#0 CGTGCCGTGTTCATGGCCTTCGGCACCCGCGGCGACGTCTTCCCCATAGCTGCACTTGCT 120
consensus_6694#1 CGTGCCGTGTTCATGGCCTTCGGCACCCGCGGCGACGTCTTCCCCATAGCTGCACTTGCT 118
************************************************************
consensus_6694#0 GCAGCTTTTGCGCAGGACCAACGACAGTATGGTGTAGTGTTCATCACACATTCAGCACAT 180
consensus_6694#1 GCAGCTTTTGCGCAGGACCAACGACAGTATGGTGTAGTGTTCATCACACATTCAGCACAT 178
************************************************************
consensus_6694#0 CAGAGCTTGTCGACACATCTAGCAGACTGTAATGTTAGATATATGCCTGTGTCAAGCCCA 240
consensus_6694#1 CAGAGCTTGTCGACACATCTAGCAGACTGTAATGTTAGATATATGCCTGTGTCAAGCCCA 238
************************************************************
consensus_6694#0 CCTGTCCTTGCTGCCGAACAGCTCGAGAGCATCTCATAGGAAAAAGACCATTCAAGTGGA 300
consensus_6694#1 CCTGTCCTTGCTGCCGAACAGCTCGAGAGCATCTCATAGGAAAAAGACCATTCAAGTGGA 298
************************************************************
consensus_6694#0 GCACAGGAGAGAGTGCTTGTCTGCCGTCGAAAATGTTTTTGGAAATGACATGAGCACTCA 360
consensus_6694#1 GCACAGGAGAGAGTGCTTGTCTGCCGTCGAAAATGTTTTTGGAAATGACATGAGCACTCA 358
************************************************************
consensus_6694#0 TGGTGATTTCATTGTGATCAACTTCTTTGCGTTGGAAGGTTGGCATCTTGCAGAATTGTT 420
consensus_6694#1 TGGTGATTTCATTGTGATCAACTTCTTTGCGTTGGAAGGTTGGCATCTTGCAGAATTGTT 418
************************************************************
consensus_6694#0 CCAAGTTAAGTGCATCATTGCTGCTCCCTATTTTGTTCCATACAGTGCACCTGCATCATT 480
consensus_6694#1 CCAAGTTAAGTGCATCATTGCTGCTCCCTATTTTGTTCCATACAGTGCACCTGCATCATT 478
************************************************************
consensus_6694#0 TGAACGCCAATTTAAACAAAGTCTTCCTCTTCTATACAAGTACTTTCAAGAAGCTCCCCT 540
consensus_6694#1 TGAACGCCAATTTAAACAAAGTCTTCCTCTTCTATACAAGTACTTTCAAGAAGCTCCCCT 538
************************************************************
consensus_6694#0 GAACATGGTTTGCTGGACAGACATTACCCACTGGATGTGGGCATTGTTCATGGAAAGTTG 600
consensus_6694#1 GAACATGGTTTGCTGGACAGACATTACCCACTGGATGTGGGCATTGTTCATGGAAAGTTG 598
************************************************************
consensus_6694#0 GGGATCATGGAGAAATGATAGTCTAAATCTTAGCCCAATTCCTTTTACAGATCCAGTAAC 660
consensus_6694#1 GGGATCATGGAGAAATGATAGTCTAAATCTTAGCCCAATTCCTTTTACAGATCCAGTAAC 658
************************************************************
consensus_6694#0 AAATCTTCCTCTGTGGTATATGCGAGAAGAATCCCCATTGTTGCTGTATGGTTTCAGCAA 720
consensus_6694#1 AAATCTTCCTCTGTGGTATATGCGAGAAGAATCCCCATTGTTGCTGTATGGTTTCAGCAA 718
************************************************************
consensus_6694#0 GGAAATTGTTGAGTGCCCAGCATGGGTTTTCTTAGAAATCCAAAAGCATTTCTGATGGTG 780
consensus_6694#1 GGAAATTGTTGAGTGCCCAGGATA-------TTGGCCATTCAGCGCTCATGTTTGTGGTT 771
******************** ** ** * ** ** * * ****
consensus_6694#0 CTTAAAGCTGTCATAGAGAAAACAGATTACAGATTTATCCTTTTCTCATCTGGATACCAG 840
consensus_6694#1 TTTGGTTTCTTCCTA--------------------------------------------- 786
** ** **
consensus_6694#0 CCATTAGATTCTGCAATACAATATTTTGCTCCTTCAGTAGCAGAATCAAGTGAGTATCAG 900
consensus_6694#1 ------------------------------------------------------------
consensus_6694#0 GCATCTGCTCTTCATTGTGACAGCAATCTCCTTTTTAATGGTCGACTCTTTTGCTTTTCT 960
consensus_6694#1 ------------------------------------------------------------
consensus_6694#0 GGATCAATACCATACAGTTGGCTGTTTCCTAAATGTGCAGTTGCTATTCACCATGCTGGC 1020
consensus_6694#1 ------------------------------------------------------------
consensus_6694#0 AGTGGATCTACAGCTGCAGCACTTTTTGCCGGCATCCCTCAGATTTCATGTCCTTTCCTG 1080
consensus_6694#1 ------------------------------------------------------------
consensus_6694#0 CTGGATCAGTTTTACTGGGCAGAAAGGCTACACTGGCTAGGAGTGGCACCTGAGCCCCTA 1140
consensus_6694#1 ------------------------------------------------------------
consensus_6694#0 GGAAGACAACATCTAATTCCGGATACTGACAATGCCTCAAGCATCAACAGTGCTGCAGAT 1200
consensus_6694#1 ------------------------------------------------------------
consensus_6694#0 ATGCTGATTGGAGCTATCAAATCGGCATTATCACCTGAAATTAAAGCTCAGGCAACCAGA 1260
consensus_6694#1 ------------------------------------------------------------
consensus_6694#0 ATCGCTAACAAACTTTCTTCTGAGGACGGGATTGGAGAAGCCCTCAGGATCTTGAAAGAG 1320
consensus_6694#1 ------------------------------------------------------------
consensus_6694#0 AGTTTTGCCCCAAATTGAAAGTTAAGTGATAAGAAGCAGGGGATACGACGAACCAATTGC 1380
consensus_6694#1 ------------------------------------------------------------
consensus_6694#0 ACGTAAAATAGTTATGTGCTTTGAAGTTTGAATTAGCATTTGTCACTCCAATTGATTTAT 1440
consensus_6694#1 ------------------------------------------------------------
consensus_6694#0 TATGCGCCGTATGAACTGGAAAACAGCCTTGGTCACTAGTATTTTTCTTGTTTGGAATGG 1500
consensus_6694#1 ------------------------------------------------------------
consensus_6694#0 AATGGAATGGCAAAACGGCAATATGATGAACTTATGCAGAGACTTGTGTTGTAGATAGAG 1560
consensus_6694#1 ------------------------------------------------------------
consensus_6694#0 TAATCATGAATAAAGAAAACCAAAACCATGTATATGATAAAAAAAAAA 1608
consensus_6694#1 ------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||