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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6908#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1292 fasta sequence
[AACTACCCCAAAATTCCCCCGCGCCGCACCTCCATTGCCGCTACGCGACGCGAGGCTCAAGCAAAGGTCAACCGCGCGTCGCCGGGGGGGTGATGTCGTCGTCGGCGGCGGCGGAGGACGGCGAGGCGGCGTACTGGCTGCGGTGGCAGGTGTTCGTCTGCGGCGCCCTCATCGTGCTGCCGACGGCCGCCGCGGCGGCGCTGCTCCCGCGGCTGCGCAGGGCGGCCGCGCCCCTCCGCGGGACCGACCTGTGGGTCCCCTGCTGGGCGCGTCTCCACCCCGGCTGGCTCCTCGGCTACCGCGCCTTCGCCCTCGCCGCCGCCGTCGCCCTCCTCGTCCGCCTCCTCGTCGGCCATGGCATCGACGTCTTCTTCTTCTACACCCAGTGGACCTTTTTATTAGTCACCATATATTTTGCGTTTGCAACTGCTATATCAGCTCACGGATGTTGGGTTTACTCAAAGAAAAACTTGAAGAAAGCTGATGAATCCCATGAATTTCTTAGTGACGATGTGGAAAATCGTGAGTTTTCCACTTCTTCTGGCGAGATGAAAAGGGATGAGGAGAAGATAACAAACTATCATGAACAAATAGCAAATGAGAAAAGA-GCTGGATTATGGGGACGTTGCATGCAAATCATTTACCAGACTAGTGCAGGTGCAACAATGCT-GACTGATATCACATTTTGGGGACTACTTGTGCCATTCTTTTACCGTGATAAATTTGGACTTTCCTTGATCACTGATGGCATGCATTCTCTTAATGCTGTTCTTTTACTGATAGACACATTTCTCAACAATATGCCCTTCCCCTGGTACCGCCTGGCTTTCTTTGTATTTTGGAGCTGCTCCTATGTAACCTTCCAATGGGTCCTTCATGCTTGTGGAGCTATATCCTGGTGGCCATACCCATTTCTTGACCTTTCATCGTCAGGGGCTCCTCTATGGTATGTTTTCTCATCTGTTCATCCATACCATCCATGGAACTTTGCTGTCCTGACAACACCATTAATTTTTCTGCAGGTACCTCGCCATGGCCATTGTTCATATCCCTTGCTTCTTTCTGTATTGGTCGATTGTCAAGGCAAAGCAAACTTACTTCCCCAGATTGTTTCCACATGCTTATGTGAGAAATTAGATCCTAACTCATACGTGCAAACTGTATGAATAAGTGCATGCCATTTATATATACCCTTACTAGTACGAAATGTCTTCATGTATAGTCTGATAGATTAGCGATCCCTGGAAATTGGGCTGAGTTATGAAGCCCATCGGAACATTGCAGGGATCAAA]
[+] EMBL CB676735 [AACTACCCCAAAATTCCCCCGCGCCGCACCTCCATTGCCGCTACGCGACGCGAGGCTCAAGCAAAGGTCAACCGCGCGTCGCCGGGGGGGTGATGTCGTCGTCGGCGGCGGCGGAGGACGGCGAGGCGGCGTACTGGCTGCGGTGGCAGGTGTTCGTCTGCGGCGCCCTCATCGTGCTGCCGACGGCCGCCGCGGCGGCGCTGCTCCCGCGGCTGCGCAGGGCGGCCGCGCCCCTCCGCGGGACCGACCTGTGGGTCCCCTGCTGGGCGCGTCTCCACCCCGGCTGGCTCCTCGGCTACCGCGCCTTCGCCCTCGCCGCCGCCGTCGCCCTCCTCGTCCGCCTCCTCGTCGGCCATGGCATCGACGTCTTCTTCTTCTACACCCAGTGGACCTTTTTATTAGTCACCATATATTTTGCGTTTGCAACTGCTATATCAGCTCACGGATGTTGGGTTTACTCAAAGAAAAACTTGAAGAAAGCTGATGAATCCCATGAATTTCTTAGTGACGATGTGGAAAATCGTGAGTTTTCCACTTCTTCTGGCGAGATGAAAAGGGATGAGGAGAAGATAACAAACTATCATGAACAAATAGCAAATGAGAAAAGA GCTGGATTATGGGGACGTTGCATGCAAATCATTTACCAGACTAGTGCAGGTGCAACAATGCT GACTGATATCACATTTTGGGGACTACTTGTGCCATTCTTTTACCGTGATAAATTTGGACTTTCCTTGATCACTGATGGCATGCATTCTCTTAATGCTGT ]
[-] EMBL CB676736 [ GCAAATGAGAAAAGAGGTTGGATTTTGGGGACGTTGCATGCAAATCATTTACCAGACTAGTGCAGGTGCAACAATGCTGGAGTGATATCACATTTTGGGGACTACTTGTGCCATTCTTTTACCGTGATAAGTTTGGACTTTCCTTGATCACTGATGGCATGCATTCTCTTAATGCTGTTCTTTTACTGATAGACACATTTCTCAACAATATGCCCTTCCCCTGGTACCGCCTGGCTTTCTTTGTATTTTGGAGCTGCTCCTATGTAACCTTCCAATGGGTCCTTCATGCTTGTGGAGCTATATCCTGGTGGCCATACCCATTTCTTGACCTTTCATCGTCAGGGGCTCCTCTATGGTATGTTTTCTCATCTGTTCATCCATACCATCCATGGAACTTTGCTGTCCTGACAACACCATTAATTTTTCTGCAGGTACCTCGCCATGGCCATTGTTCATATCCCTTGCTTCTTTCTGTATTGGTCGATTGTCAAGGCAAAGCAAACTTACTTCCCCAGATTGTTTCCACATGCTTATGTGAGAAATTAGATCCTAACTCATACGTGCAAACTGTATGAATAAGTGCATGCCATTTATATATACCCTTACTAGTACGAAATGTCTTCATGTATAGTCTGATAGATTAGCGATCCCTGGAAATTGGGCTGAGTTATGAAGCCCATCGGAACATTGCAGGGATCAAA]
consensusID : consensus_6908#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 466 fasta sequence
[ACCGCCTGGCTTTCTTTGTATTTTGGAGCTGCTCCTATGTACCCTTCCAATGGGTCCTTCATGCTTGTGGAGCTATATCCTGGTGGCNATACCCATTTCTTGACCTTTCATCGTCAGGGGCTCCTCTATGGTACCTCGCCATGGCCATTGTTCATATCCCTTGCTTCTTTCTGTATTGGTCGATTGTCAAGGCAAAGCAAACTTACTTCCCCAGATTGTTTCCACATGCTTATGTGAGAAATTAGATCCTAACTCATACGTGCAAACTGTATGAATAAGTGCATGCNATTTATATATACCCTTACTNGTACGAAATGTCTTCATGTATAGTCTGATAGATTAGCGATCCCTGGAAATTGGGCTGAGTTATGAAGCCNATCGGAACAATGCTTCGATCAAATGAAATACGAAGAGCTTTAANATAGCCTTTGTTCTGTAAAAAAAAAAAAAAAAAAAAAAAAGGGCN]
[+] EMBL AU092143 [ACCGCCTGGCTTTCTTTGTATTTTGGAGCTGCTCCTATGTACCCTTCCAATGGGTCCTTCATGCTTGTGGAGCTATATCCTGGTGGCNATACCCATTTCTTGACCTTTCATCGTCAGGGGCTCCTCTATGGTACCTCGCCATGGCCATTGTTCATATCCCTTGCTTCTTTCTGTATTGGTCGATTGTCAAGGCAAAGCAAACTTACTTCCCCAGATTGTTTCCACATGCTTATGTGAGAAATTAGATCCTAACTCATACGTGCAAACTGTATGAATAAGTGCATGCNATTTATATATACCCTTACTNGTACGAAATGTCTTCATGTATAGTCTGATAGATTAGCGATCCCTGGAAATTGGGCTGAGTTATGAAGCCNATCGGAACAATGCTTCGATCAAATGAAATACGAAGAGCTTTAANATAGCCTTTGTTCTGTAAAAAAAAAAAAAA ]
[-] EMBL OSC109851 [ GGCTCCTCTATGGTACCTCGCCATGGCCATTGTTCATATCCCTTGCTTCTTTCTGTATTGGTCGATTGTCAAGGCAAAGCAAACTTACTTCCCCAGATTGTTTCCACATGCTTATGTGAGAAATTAGATCCTAACTCATACGTGCAAACTGTATGAATAAGTGCATGCCATTTATATATACCCTTACTAGTACGAAATGTCTTCATGTATAGTCTGATAGATTAGCGATCCCTGGAAATTGGGCTGAGTTATGAAGCCCATCGGAACAATGCTTCGATCAAATGAAATACGAAGAGCTTTAACATAGCCTTTGTTCTGTAAAAAAAAAAAAAAAAAAAAAAAAGGGCN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6908#0 AACTACCCCAAAATTCCCCCGCGCCGCACCTCCATTGCCGCTACGCGACGCGAGGCTCAA 60
consensus_6908#1 ------------------------------------------------------------
consensus_6908#0 GCAAAGGTCAACCGCGCGTCGCCGGGGGGGTGATGTCGTCGTCGGCGGCGGCGGAGGACG 120
consensus_6908#1 ------------------------------------------------------------
consensus_6908#0 GCGAGGCGGCGTACTGGCTGCGGTGGCAGGTGTTCGTCTGCGGCGCCCTCATCGTGCTGC 180
consensus_6908#1 ------------------------------------------------------------
consensus_6908#0 CGACGGCCGCCGCGGCGGCGCTGCTCCCGCGGCTGCGCAGGGCGGCCGCGCCCCTCCGCG 240
consensus_6908#1 ------------------------------------------------------------
consensus_6908#0 GGACCGACCTGTGGGTCCCCTGCTGGGCGCGTCTCCACCCCGGCTGGCTCCTCGGCTACC 300
consensus_6908#1 ------------------------------------------------------------
consensus_6908#0 GCGCCTTCGCCCTCGCCGCCGCCGTCGCCCTCCTCGTCCGCCTCCTCGTCGGCCATGGCA 360
consensus_6908#1 ------------------------------------------------------------
consensus_6908#0 TCGACGTCTTCTTCTTCTACACCCAGTGGACCTTTTTATTAGTCACCATATATTTTGCGT 420
consensus_6908#1 ------------------------------------------------------------
consensus_6908#0 TTGCAACTGCTATATCAGCTCACGGATGTTGGGTTTACTCAAAGAAAAACTTGAAGAAAG 480
consensus_6908#1 ------------------------------------------------------------
consensus_6908#0 CTGATGAATCCCATGAATTTCTTAGTGACGATGTGGAAAATCGTGAGTTTTCCACTTCTT 540
consensus_6908#1 ------------------------------------------------------------
consensus_6908#0 CTGGCGAGATGAAAAGGGATGAGGAGAAGATAACAAACTATCATGAACAAATAGCAAATG 600
consensus_6908#1 ------------------------------------------------------------
consensus_6908#0 AGAAAAGAGCTGGATTATGGGGACGTTGCATGCAAATCATTTACCAGACTAGTGCAGGTG 660
consensus_6908#1 ------------------------------------------------------------
consensus_6908#0 CAACAATGCTGACTGATATCACATTTTGGGGACTACTTGTGCCATTCTTTTACCGTGATA 720
consensus_6908#1 ------------------------------------------------------------
consensus_6908#0 AATTTGGACTTTCCTTGATCACTGATGGCATGCATTCTCTTAATGCTGTTCTTTTACTGA 780
consensus_6908#1 ------------------------------------------------------------
consensus_6908#0 TAGACACATTTCTCAACAATATGCCCTTCCCCTGGTACCGCCTGGCTTTCTTTGTATTTT 840
consensus_6908#1 ------------------------------------ACCGCCTGGCTTTCTTTGTATTTT 24
************************
consensus_6908#0 GGAGCTGCTCCTATGTAACCTTCCAATGGGTCCTTCATGCTTGTGGAGCTATATCCTGGT 900
consensus_6908#1 GGAGCTGCTCCTATGTACCCTTCCAATGGGTCCTTCATGCTTGTGGAGCTATATCCTGGT 84
***************** ******************************************
consensus_6908#0 GGCCATACCCATTTCTTGACCTTTCATCGTCAGGGGCTCCTCTATGGTATGTTTTCTCAT 960
consensus_6908#1 GGCNATACCCATTTCTTGACCTTTCATCGTCAGGGGCTCCTCTATGGTA----------- 133
*** *********************************************
consensus_6908#0 CTGTTCATCCATACCATCCATGGAACTTTGCTGTCCTGACAACACCATTAATTTTTCTGC 1020
consensus_6908#1 ------------------------------------------------------------
consensus_6908#0 AGGTACCTCGCCATGGCCATTGTTCATATCCCTTGCTTCTTTCTGTATTGGTCGATTGTC 1080
consensus_6908#1 -----CCTCGCCATGGCCATTGTTCATATCCCTTGCTTCTTTCTGTATTGGTCGATTGTC 188
*******************************************************
consensus_6908#0 AAGGCAAAGCAAACTTACTTCCCCAGATTGTTTCCACATGCTTATGTGAGAAATTAGATC 1140
consensus_6908#1 AAGGCAAAGCAAACTTACTTCCCCAGATTGTTTCCACATGCTTATGTGAGAAATTAGATC 248
************************************************************
consensus_6908#0 CTAACTCATACGTGCAAACTGTATGAATAAGTGCATGCCATTTATATATACCCTTACTAG 1200
consensus_6908#1 CTAACTCATACGTGCAAACTGTATGAATAAGTGCATGCNATTTATATATACCCTTACTNG 308
************************************** ******************* *
consensus_6908#0 TACGAAATGTCTTCATGTATAGTCTGATAGATTAGCGATCCCTGGAAATTGGGCTGAGTT 1260
consensus_6908#1 TACGAAATGTCTTCATGTATAGTCTGATAGATTAGCGATCCCTGGAAATTGGGCTGAGTT 368
************************************************************
consensus_6908#0 ATGAAGCCCATCGGAACATTGCAGGGATCAAA---------------------------- 1292
consensus_6908#1 ATGAAGCCNATCGGAACAATGCTTCGATCAAATGAAATACGAAGAGCTTTAANATAGCCT 428
******** ********* *** *******
consensus_6908#0 --------------------------------------
consensus_6908#1 TTGTTCTGTAAAAAAAAAAAAAAAAAAAAAAAAGGGCN 466
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||