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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7089#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1592 fasta sequence
[TGCCCCCGCGTCGTTGCGTTGCGTGCGGCCGTCGGGGATGGCGACGAGCGGCGCGGCGGCACGTCCTCCAGTGGCCACCACCCTCTCCGCGCGCCGTGGCACGGCTCCCTCCGCCACCGCCGCCGCCGCCTCCTGCCCCGCGTCGTCGGCGCGGCGCACTACCTGGAGGCCGCGGGCGAGGCTCTCCTCGGGGAACGCGGCGCGGGCGCGGGCGCGGCTGCTGCGTGTCGAGGCCTCCTCCATGGCCGACCCGGTCGAGGAGAGCCTCCCCGCGGCGCCGCACACGGCCACGGATGCTCCGTTGGAGACTCAGCCCCAGGTGCGCACCAGCATGTGGAATTGGAAGGGCTACAACATTCGGTACCAGTACGCGGGAACTTCTGGCCCTGCATTGGTTCTAATTCATGGTTTCGGAGCAAACAGTGACCATTGGCGGAAAAATATTCCTGTTCTTGCTCTGAAAAACAGAGTATATGCAATTGATCTTATTGGTTATGGCTATTCTGATAAGCCTAATCCACGTGAGCTTGGTGAGAGCTTTTATACTTTTGAGACATGGGGAGAACAGCTGAATACGTTTTGTGCTGAAGTTATTAAGAGCGAAGCTTTCTTCATATGCAATTCAATTGGAGGGCTTGTTGGTCTACAGGCAGCTGCTATGGAACCACAGAAGTGCAAGGGTATCTTTTTATTGAATATTTCATTGAGGATGCTTCATATCAGTAAGCAGCCATGGTTTGGAAGGCCTTTCATCAAATCATTCCAAAGTCTGCTACGGAATACTGTTATTGGGAAGCTGTTCTTCAGCGCTGTTGCTACACCAGAATCTGTGAAAAATATTCTCTGTCAGTGCTACCATGACACATCCGCAGTGACAGATGAGCTAGTTCAGTTTATTCTGCAGCCAGGGCTTGACCCTGGTGCTGTGGATGTATTCCTTGAGTTCATCTGCTACTCAGGAGGTCCTCTACCTGAAGAATTACTTCCCAGAGTGAAGTGTCCAGTTTTGGTAGCTTGGGGTGAGAAGGACCCATGGGAGCCTGTGGAGCTTGGAAGAGCTTACGCATCTTTTGATACTGTTGAAGATTTTGTTGTCTTGCCAAATGTTGGACACTGCCCACAGGATGAAGCACCTGACCTTGTAAATCCACTTGTCGAATCATTTGTTACACGCCATAGTTAGCACATGGCTGGGGCTGCTTTCTCTTTGTATTAAAGCCCCTGACCCACTAAAATCTGGTTTGCTGGAAAACGGGAACAACTATTTTATCTCAGGATACCAGATGGTCCCCTCTTTGTAGGCCATGTACTTGCATTTGAGTATTGGTGATAACACACCTGACTGATTGAATTTCAAGGGATGACGAAGGAATCTGACTTATTGGAGGGAACAAAGAACCTGTCTTCTCAAAGCAGAGGGGTTAGTACCAGCAGCATGGAGGTTTTATTCTGTTTTTAAGTTATAACGAAAATAATGGCAAGTTCATAAATGTGAAATTTCCACTATTCTCTCTGCAATCATTCTTACTTGTAATCTGACAGTATGTATATATATGCCACTAGTATTAGCAGTCCCCTCAGTAAATTAATTC]
[+] EMBL CB644514 [TGCCCCCGCGTCGTTGCGTTGCGTGCGGCCGTCGGGGATGGCGACGAGCGGCGCGGCGGCACGTCCTCCAGTGGCCACCACCCTCTCCGCGCGCCGTGGCACGGCTCCCTCCGCCACCGCCGCCGCCGCCTCCTGCCCCGCGTCGTCGGCGCGGCGCACTACCTGGAGGCCGCGGGCGAGGCTCTCCTCGGGGAACGCGGCGCGGGCGCGGGCGCGGCTGCTGCGTGTCGAGGCCTCCTCCATGGCCGACCCGGTCGAGGAGAGCCTCCCCGCGGCGCCGCACACGGCCACGGATGCTCCGTTGGAGACTCAGCCCCAGGTGCGCACCAGCATGTGGAATTGGAAGGGCTACAACATTCGGTACCAGTACGCGGGAACTTCTGGCCCTGCATTGGTTCTAATTCATGGTTTCGGAGCAAACAGTGACCATTGGCGGAAAAATATTCCTGTTCTTGCTCTGAAAAACAGAGTATATGCAATTGATCTTATTGGTTATGGCTATTCTGATAAGCCTAATCCACGTGAGCTTGGTGAGAGCTTTTATACTTTTGAGACATGGGGAGAACAGCTGAATACGTTTTGTGCTGAAGTTATTAAGAGCGAAGCTTTCTTCATATGCAATTCAATTGGAGGGCTTGTTGGTCTACAGGCAGCTGCTATGGAACCACAGAAGTGCAAGGGTATCTTTTTATTGAATATTTCATTGAGGATGCTTCATATCAGTAAGCAGCCATGGTTTGGAAGGCCTTTCATCAAATCATTCCAAAGTCTGCTACGGAATACTGTTATTGGGAAGCTGTTCTTCAGCGCTGTTGCTACACCAGAATCTGTGAAAAAT ]
[+] EMBL AK060302 [ AGCGAAGCTTTCTTCATATGCAATTCAATTGGAGGGCTTGTTGGTCTACAGGCAGCTGCTATGGAACCACAGAAGTGCAAGGGTATCTTTTTATTGAATATTTCATTGAGGATGCTTCATATCAGTAAGCAGCCATGGTTTGGAAGGCCTTTCATCAAATCATTCCAAAGTCTGCTACGGAATACTGTTATTGGGAAGCTGTTCTTCAGCGCTGTTGCTACACCAGAATCTGTGAAAAATATTCTCTGTCAGTGCTACCATGACACATCCGCAGTGACAGATGAGCTAGTTCAGTTTATTCTGCAGCCAGGGCTTGACCCTGGTGCTGTGGATGTATTCCTTGAGTTCATCTGCTACTCAGGAGGTCCTCTACCTGAAGAATTACTTCCCAGAGTGAAGTGTCCAGTTTTGGTAGCTTGGGGTGAGAAGGACCCATGGGAGCCTGTGGAGCTTGGAAGAGCTTACGCATCTTTTGATACTGTTGAAGATTTTGTTGTCTTGCCAAATGTTGGACACTGCCCACAGGATGAAGCACCTGACCTTGTAAATCCACTTGTCGAATCATTTGTTACACGCCATAGTTAGCACATGGCTGGGGCTGCTTTCTCTTTGTATTAAAGCCCCTGACCCACTAAAATCTGGTTTGCTGGAAAACGGGAACAACTATTTTATCTCAGGATACCAGATGGTCCCCTCTTTGTAGGCCATGTACTTGCATTTGAGTATTGGTGATAACACACCTGACTGATTGAATTTCAAGGGATGACGAAGGAATCTGACTTATTGGAGGGAACAAAGAACCTGTCTTCTCAAAGCAGAGGGGTTAGTACCAGCAGCATGGAGGTTTTATTCTGTTTTTAAGTTATAACGAAAATAATGGCAAGTTCATAAATGTGAAATTTCCACTATTCTCTCTGCAATCATTCTTACTTGTAATCTGACAGTATGTATATATATGCCACTAGTATTAGCAGTCCCCTCAGTAAATTAATTC]
[-] EMBL CB674020 [ CAGCCAT GTTTGGAAGGCCTTTCATCAAATCATTCCAAAGTCTGCTACGGAATACTGTTATTGGGAAGCTGTTCTTCAGCGCTGTTGCTACACCAGAATCTGTGAAAAATATTCTCTGTCAGTGCTACCATGACACATCCGCAGTGACAGATGAGCTAGTTCAGTTTATTCTGCAGCCAGGGCTTGACCCTGGTGCTGTGGATGTATTCCTTGAGTTCATCTGCTACTCAGGAGGTCCTCTACCTGAAGAATTACTTCCCAGAGTGAAGTGTCCAGTTTTGGTAGCTTGGGGTGAGAAGGACCCATGGGAGCCTGTGGAGCTTGGAAGAGCTTACGCATCTTTTGATACTGTTGAAGATTTTGTTGTCTTGCCAAATGTTGGACACTGCCCACAGGATGAAGCACCTGACCTTGTAAATCCACTTGTCGAATCATTTGTTACACGCCATAGTTAGCACATGGCTGGGGCTGCTTTCTCTTTGTATTAAAGCCCCTGACCCACTAAAATCTGGTTTGCTGGAAAACGGGAACAACTATTTTATCTCAGGATACCAGATGGTCCCTTCTTTGTAGGCCATGTACTTGCATTTGAGTATTGGTGATAACACACCTGACTGATTGAATTTCAAGGGATGACGAAGGAATCTGACTTATTGGAGGGAACAAAGAACCTGTCTTCTCAAAGCAGAGGGGTTAGTACCAGCAGCATGGAGGTTTTATTCTGTTTTTAAGTTATAACGAAAATAATGGCAAGTTCATAAATGTGAAATTTCCACTATTCTCTCTGCAATCATTCTTACTTGTAATCTGACAGTATGTATATATATGCCACTAGTATTAGCAGTCCCCTCAGT ]
consensusID : consensus_7089#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 802 fasta sequence
[AGCAGCCATGGTTTGGAAGGCCTTTCATCAAATCATTCCAAAGTCTGCTACGGAATACTGTTATTGGGAAGCTGTTCTTCAGCGCTGTTGCTACACCAGAATCTGTGAAAAATATTCTCTGTCAGTGCTACCATGACACATCCGCAGTGACAGATGAGCTAGTTCAGTTTATTCTGCAGCCAGGGCTTGACCCTGGTGCTGTGGATGTATTCCTTGAGTTCATCTGCTACTCAGGAGGTCCTCTACCTGAAGAATTACTTCCCAGAGTGAAGTGTCCAGTTTTGGTAGCTTGGGGTGAGAAGGACCCATGGGAGCCTGTGGAGCTTGGAAGAGCTTACGCATCTTTTGATACTGTTGAAGATTTTGTTGTCTTGCCAAATGTTGGACACTGCCCACAGGATGAAGCACCTGACCTTGTAAATCCACTTGTCGAATCATTTGTTACACGCCATAGTTAGCACATGGCTGGGGCTGCTTTCTCTTTGTATTAAAGCCCCTGACCCACTAAAATCTGGTTTGCTGGAAAACGGGAACAACTATTTTATCTCAGGATACCAGATGGTCCCTTCTTTGTAGGCCATGGGATGACGAAGGAATCTGACTTATTGGAGGGAACAAAGAACCTGTCTTCTCAAAGCAGAGGGGTTAGTACCAGCAGCATGGAGGTTTTATTCTGTTTTTAAGTTATAACGAAAATAATGGCAAGTTCATAAATGTGAAATTTCCACTATTCTCTCTGCAATCATTCTTACTTGTAATCTGACAGTATGTATATATATGCCACTAGTATTAGCAGTCCCCT]
[-] EMBL CB644515 [AGCAGCCATGGTTTGGAAGGCCTTTCATCAAATCATTCCAAAGTCTGCTACGGAATACTGTTATTGGGAAGCTGTTCTTCAGCGCTGTTGCTACACCAGAATCTGTGAAAAATATTCTCTGTCAGTGCTACCATGACACATCCGCAGTGACAGATGAGCTAGTTCAGTTTATTCTGCAGCCAGGGCTTGACCCTGGTGCTGTGGATGTATTCCTTGAGTTCATCTGCTACTCAGGAGGTCCTCTACCTGAAGAATTACTTCCCAGAGTGAAGTGTCCAGTTTTGGTAGCTTGGGGTGAGAAGGACCCATGGGAGCCTGTGGAGCTTGGAAGAGCTTACGCATCTTTTGATACTGTTGAAGATTTTGTTGTCTTGCCAAATGTTGGACACTGCCCACAGGATGAAGCACCTGACCTTGTAAATCCACTTGTCGAATCATTTGTTACACGCCATAGTTAGCACATGGCTGGGGCTGCTTTCTCTTTGTATTAAAGCCCCTGACCCACTAAAATCTGGTTTGCTGGAAAACGGGAACAACTATTTTATCTCAGGATACCAGATGGTCCCTTCTTTGTAGGCCATGGGATGACGAAGGAATCTGACTTATTGGAGGGAACAAAGAACCTGTCTTCTCAAAGCAGAGGGGTTAGTACCAGCAGCATGGAGGTTTTATTCTGTTTTTAAGTTATAACGAAAATAATGGCAAGTTCATAAATGTGAAATTTCCACTATTCTCTCTGCAATCATTCTTACTTGTAATCTGACAGTATGTATATATATGCCACTAGTATTAGCAGTCCCCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7089#0 TGCCCCCGCGTCGTTGCGTTGCGTGCGGCCGTCGGGGATGGCGACGAGCGGCGCGGCGGC 60
consensus_7089#1 ------------------------------------------------------------
consensus_7089#0 ACGTCCTCCAGTGGCCACCACCCTCTCCGCGCGCCGTGGCACGGCTCCCTCCGCCACCGC 120
consensus_7089#1 ------------------------------------------------------------
consensus_7089#0 CGCCGCCGCCTCCTGCCCCGCGTCGTCGGCGCGGCGCACTACCTGGAGGCCGCGGGCGAG 180
consensus_7089#1 ------------------------------------------------------------
consensus_7089#0 GCTCTCCTCGGGGAACGCGGCGCGGGCGCGGGCGCGGCTGCTGCGTGTCGAGGCCTCCTC 240
consensus_7089#1 ------------------------------------------------------------
consensus_7089#0 CATGGCCGACCCGGTCGAGGAGAGCCTCCCCGCGGCGCCGCACACGGCCACGGATGCTCC 300
consensus_7089#1 ------------------------------------------------------------
consensus_7089#0 GTTGGAGACTCAGCCCCAGGTGCGCACCAGCATGTGGAATTGGAAGGGCTACAACATTCG 360
consensus_7089#1 ------------------------------------------------------------
consensus_7089#0 GTACCAGTACGCGGGAACTTCTGGCCCTGCATTGGTTCTAATTCATGGTTTCGGAGCAAA 420
consensus_7089#1 ------------------------------------------------------------
consensus_7089#0 CAGTGACCATTGGCGGAAAAATATTCCTGTTCTTGCTCTGAAAAACAGAGTATATGCAAT 480
consensus_7089#1 ------------------------------------------------------------
consensus_7089#0 TGATCTTATTGGTTATGGCTATTCTGATAAGCCTAATCCACGTGAGCTTGGTGAGAGCTT 540
consensus_7089#1 ------------------------------------------------------------
consensus_7089#0 TTATACTTTTGAGACATGGGGAGAACAGCTGAATACGTTTTGTGCTGAAGTTATTAAGAG 600
consensus_7089#1 ------------------------------------------------------------
consensus_7089#0 CGAAGCTTTCTTCATATGCAATTCAATTGGAGGGCTTGTTGGTCTACAGGCAGCTGCTAT 660
consensus_7089#1 ------------------------------------------------------------
consensus_7089#0 GGAACCACAGAAGTGCAAGGGTATCTTTTTATTGAATATTTCATTGAGGATGCTTCATAT 720
consensus_7089#1 ------------------------------------------------------------
consensus_7089#0 CAGTAAGCAGCCATGGTTTGGAAGGCCTTTCATCAAATCATTCCAAAGTCTGCTACGGAA 780
consensus_7089#1 -----AGCAGCCATGGTTTGGAAGGCCTTTCATCAAATCATTCCAAAGTCTGCTACGGAA 55
*******************************************************
consensus_7089#0 TACTGTTATTGGGAAGCTGTTCTTCAGCGCTGTTGCTACACCAGAATCTGTGAAAAATAT 840
consensus_7089#1 TACTGTTATTGGGAAGCTGTTCTTCAGCGCTGTTGCTACACCAGAATCTGTGAAAAATAT 115
************************************************************
consensus_7089#0 TCTCTGTCAGTGCTACCATGACACATCCGCAGTGACAGATGAGCTAGTTCAGTTTATTCT 900
consensus_7089#1 TCTCTGTCAGTGCTACCATGACACATCCGCAGTGACAGATGAGCTAGTTCAGTTTATTCT 175
************************************************************
consensus_7089#0 GCAGCCAGGGCTTGACCCTGGTGCTGTGGATGTATTCCTTGAGTTCATCTGCTACTCAGG 960
consensus_7089#1 GCAGCCAGGGCTTGACCCTGGTGCTGTGGATGTATTCCTTGAGTTCATCTGCTACTCAGG 235
************************************************************
consensus_7089#0 AGGTCCTCTACCTGAAGAATTACTTCCCAGAGTGAAGTGTCCAGTTTTGGTAGCTTGGGG 1020
consensus_7089#1 AGGTCCTCTACCTGAAGAATTACTTCCCAGAGTGAAGTGTCCAGTTTTGGTAGCTTGGGG 295
************************************************************
consensus_7089#0 TGAGAAGGACCCATGGGAGCCTGTGGAGCTTGGAAGAGCTTACGCATCTTTTGATACTGT 1080
consensus_7089#1 TGAGAAGGACCCATGGGAGCCTGTGGAGCTTGGAAGAGCTTACGCATCTTTTGATACTGT 355
************************************************************
consensus_7089#0 TGAAGATTTTGTTGTCTTGCCAAATGTTGGACACTGCCCACAGGATGAAGCACCTGACCT 1140
consensus_7089#1 TGAAGATTTTGTTGTCTTGCCAAATGTTGGACACTGCCCACAGGATGAAGCACCTGACCT 415
************************************************************
consensus_7089#0 TGTAAATCCACTTGTCGAATCATTTGTTACACGCCATAGTTAGCACATGGCTGGGGCTGC 1200
consensus_7089#1 TGTAAATCCACTTGTCGAATCATTTGTTACACGCCATAGTTAGCACATGGCTGGGGCTGC 475
************************************************************
consensus_7089#0 TTTCTCTTTGTATTAAAGCCCCTGACCCACTAAAATCTGGTTTGCTGGAAAACGGGAACA 1260
consensus_7089#1 TTTCTCTTTGTATTAAAGCCCCTGACCCACTAAAATCTGGTTTGCTGGAAAACGGGAACA 535
************************************************************
consensus_7089#0 ACTATTTTATCTCAGGATACCAGATGGTCCCCTCTTTGTAGGCCATGTACTTGCATTTGA 1320
consensus_7089#1 ACTATTTTATCTCAGGATACCAGATGGTCCCTTCTTTGTAGGCCATG------------- 582
******************************* ***************
consensus_7089#0 GTATTGGTGATAACACACCTGACTGATTGAATTTCAAGGGATGACGAAGGAATCTGACTT 1380
consensus_7089#1 --------------------------------------GGATGACGAAGGAATCTGACTT 604
**********************
consensus_7089#0 ATTGGAGGGAACAAAGAACCTGTCTTCTCAAAGCAGAGGGGTTAGTACCAGCAGCATGGA 1440
consensus_7089#1 ATTGGAGGGAACAAAGAACCTGTCTTCTCAAAGCAGAGGGGTTAGTACCAGCAGCATGGA 664
************************************************************
consensus_7089#0 GGTTTTATTCTGTTTTTAAGTTATAACGAAAATAATGGCAAGTTCATAAATGTGAAATTT 1500
consensus_7089#1 GGTTTTATTCTGTTTTTAAGTTATAACGAAAATAATGGCAAGTTCATAAATGTGAAATTT 724
************************************************************
consensus_7089#0 CCACTATTCTCTCTGCAATCATTCTTACTTGTAATCTGACAGTATGTATATATATGCCAC 1560
consensus_7089#1 CCACTATTCTCTCTGCAATCATTCTTACTTGTAATCTGACAGTATGTATATATATGCCAC 784
************************************************************
consensus_7089#0 TAGTATTAGCAGTCCCCTCAGTAAATTAATTC 1592
consensus_7089#1 TAGTATTAGCAGTCCCCT-------------- 802
******************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||