These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7276#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1842 fasta sequence [GCCCCCCGTCGCCTCCCTTTCTTCCTCGTCTCCTCCTCCTTTTCACACGCGCAAGCTGCTCGAGCGAGCGCGCTCACACTATCACAGGGAGGGGAGCAGGAGAGGGAGGAGATGCCGGTGCCGGGGAGCCAGAACGGGCGGCCGAGGCCGGCGAAGGCGGAGACCATCCACGGCCTCGCCCGCGCCGGCGACCTCGCCGGCGTCCAGAGGAAGCTGCAGGAGAATCCCGCCCTCATCAACGACCGGAACCCCGTCATGTCCCAAACACCGCTTCATGTCGCAGCTGGCTACAATAACACTGGCATAGTCAAATTCTTGCTTGATTTCCAAGGCACGGATAAAGTTGAGCTGGAAGCAAAGAACATGTATGGAGAGACACCCCTGCACATGGCTGTGAAAAACAGTTCTTGTGAATCAGCAAGATTGCTACTTGAACGTGGTGCACATATAGAAGCCAAAGCAAATAATGGCATGGCACCATTGCATTTAGCTGTCTGGCATGCACTTCAATCTGGAGATTGTAGCACCGTAAGCGTGTTGCTAAGCTACAATGCGGATTGCTATGCAAAAGACGATGAAGGCAAAATCCCTTCGAATCATATTCCTGGAGGAGCTGGTAATGAGAAGCTGCAGAAACTCCTCACTCGCCATATGGAAGAGCAAAGAAAACGGAAAGCCCTCATGTCATGCCGTGAAGGAAAAGCAATGGCGGAGTTTGAAGAAGCAATATCACAAATTGTAGGATTACAGGACCTCAAAATGCAATTGCGTAGATGGGCCAGGGGAATGCTTTTTGATGAGAAACGACGAGCTATGGGCTTAGGGATTGCTAGCAGAAGGGCTCCCCATATGGCATTTCTTGGCAATCCAGGAACAGGTAAAACAATGGTTGCTCGGATTCTTGGAAAGCTTCTTCATATGGTTGGGGTTCTCCCTACCGACAAAGTTACTGAAGTACAGCGAACTGATCTTGTTGGAGAATTTGTGGGGCACACTGGACCAAAAACTAGGCGAAAGATACAGGATGCTGAGGGTGGAATTCTGTTTGTGGATGAAGCTTACAGGTTGATACCGATGCAAAAATCTGATGATAAGGATTACGGTGTGGAGGCCTTGGAGGAGATAATGTCTGTAATGGACAATGGCAAGATAGTTGTGATATTTGCTGGATACTGTGAGCCAATGAAGCGCGTCATCGCCTCCAACGACGGCTTCTGTAGGAGGGTCACAAAGTTCTTTTATTTTGACGATTTCACCACAACAGAATTAGCAGAGATCTTACATCTGAAGATGAATAACCCAACTGAGAGCAGTTTGCTGTATGGGTTCAAGCTGGACCCAAGCTGCAGCATCGAGGTCGTTGGAGAGCTGATTGCCAGGGAGACAACTGAACAGCGGCGTAAACAGATGAATGGTGGCCTTGTAGACACGCTGCTCATCAATGCCCGTGAGAATCTAGATCTACGTCTTGATTTCAACTGCGACGATGCGAATACTATGATCACAATCACATTGGAAGACCTGGAAGCTGGCCTTAAGCAGATCTCCAAACAGCGGCAGTTGCAGTGACACCAACCAATTTGGAGACAAATTTTTGGTTATAATTGGAAGCTCATCGACATCAGACAAAGTTTCAGTCAGGTTCAAGGATTTTGATGGAATCAAATAGTGTGATTTGGTCCAATTTTTTTGCTGGCTATTCTTTCTGTTGTATCTATTCACATTGGTAGGTAAGATTTATGCCCTTCTACAATAGCACTAATACGCATGTAGTTCTTTATTATTCCCATTGAGGTATATAAGCCTTTGTAAATACATTTCTTGCATTACGAAGCATCTTTT] [+] EMBL AK071896 [GCCCCCCGTCGCCTCCCTTTCTTCCTCGTCTCCTCCTCCTTTTCACACGCGCAAGCTGCTCGAGCGAGCGCGCTCACACTATCACAGGGAGGGGAGCAGGAGAGGGAGGAGATGCCGGTGCCGGGGAGCCAGAACGGGCGGCCGAGGCCGGCGAAGGCGGAGACCATCCACGGCCTCGCCCGCGCCGGCGACCTCGCCGGCGTCCAGAGGAAGCTGCAGGAGAATCCCGCCCTCATCAACGACCGGAACCCCGTCATGTCCCAAACACCGCTTCATGTCGCAGCTGGCTACAATAACACTGGCATAGTCAAATTCTTGCTTGATTTCCAAGGCACGGATAAAGTTGAGCTGGAAGCAAAGAACATGTATGGAGAGACACCCCTGCACATGGCTGTGAAAAACAGTTCTTGTGAATCAGCAAGATTGCTACTTGAACGTGGTGCACATATAGAAGCCAAAGCAAATAATGGCATGGCACCATTGCATTTAGCTGTCTGGCATGCACTTCAATCTGGAGATTGTAGCACCGTAAGCGTGTTGCTAAGCTACAATGCGGATTGCTATGCAAAAGACGATGAAGGCAAAATCCCTTCGAATCATATTCCTGGAGGAGCTGGTAATGAGAAGCTGCAGAAACTCCTCACTCGCCATATGGAAGAGCAAAGAAAACGGAAAGCCCTCATGTCATGCCGTGAAGGAAAAGCAATGGCGGAGTTTGAAGAAGCAATATCACAAATTGTAGGATTACAGGACCTCAAAATGCAATTGCGTAGATGGGCCAGGGGAATGCTTTTTGATGAGAAACGACGAGCTATGGGCTTAGGGATTGCTAGCAGAAGGGCTCCCCATATGGCATTTCTTGGCAATCCAGGAACAGGTAAAACAATGGTTGCTCGGATTCTTGGAAAGCTTCTTCATATGGTTGGGGTTCTCCCTACCGACAAAGTTACTGAAGTACAGCGAACTGATCTTGTTGGAGAATTTGTGGGGCACACTGGACCAAAAACTAGGCGAAAGATACAGGATGCTGAGGGTGGAATTCTGTTTGTGGATGAAGCTTACAGGTTGATACCGATGCAAAAATCTGATGATAAGGATTACGGTGTGGAGGCCTTGGAGGAGATAATGTCTGTAATGGACAATGGCAAGATAGTTGTGATATTTGCTGGATACTGTGAGCCAATGAAGCGCGTCATCGCCTCCAACGACGGCTTCTGTAGGAGGGTCACAAAGTTCTTTTATTTTGACGATTTCACCACAACAGAATTAGCAGAGATCTTACATCTGAAGATGAATAACCCAACTGAGAGCAGTTTGCTGTATGGGTTCAAGCTGGACCCAAGCTGCAGCATCGAGGTCGTTGGAGAGCTGATTGCCAGGGAGACAACTGAACAGCGGCGTAAACAGATGAATGGTGGCCTTGTAGACACGCTGCTCATCAATGCCCGTGAGAATCTAGATCTACGTCTTGATTTCAACTGCGACGATGCGAATACTATGATCACAATCACATTGGAAGACCTGGAAGCTGGCCTTAAGCAGATCTCCAAACAGCGGCAGTTGCAGTGACACCAACCAATTTGGAGACAAATTTTTGGTTATAATTGGAAGCTCATCGACATCAGACAAAGTTTCAGTCAGGTTCAAGGATTTTGATGGAATCAAATAGTGTGATTTGGTCCAATTTTTTTGCTGGCTATTCTTTCTGTTGTATCTATTCACATTGGTAGGTAAGATTTATGCCCTTCTACAATAGCACTAATACGCATGTAGTTCTTTATTATTCCCATTGAGGTATATAAGCCTTTGTAAATACATTTCTTGCATTACGAAGCATCTTTT] [+] EMBL AK104958 [ TCCTCGTCTCCTCCTCCTTTTCACACGCGCAAGCTGCTCGAGCGAGCGCGCACACACTATCACAGGGAGGGGAGCAGGAGAGGGAGGAGATGCCGGTGCCGGGGAGCCAGAACGGGCGGCCGAGGCCGGCGAAGGCGGAGACCATCCACGGCCTCGCCCGCGCCGGCGACCTCGCCGGCGTCCAGAGGAAGCTGCAGGAGAATCCCGCCCTCATCAACGACCGGAACCCCGTCATGTCCCAAACACCGCTTCATGTCGCAGCTGGCTACAATAACACTGGCATAGTCAAATTCTTGCTTGATTTCCAAGGCACGGATAAAGTTGAGCTGGAAGCAAAGAACATGTATGGAGAGACACCCCTGCACATGGCTGTGAAAAACAGTTCTTGTGAATCAGCAAAATTGCTACTTGAACGTGGTGCACATATAGAAGCCAAAGCAAATAATGGCATGGCACCATTGCATTTAGCTGTCTGGCATGCACTTCAATCTGGAGATTGTAGCACCGTAAGCGTGTTGCTAAGCTACAATGCGGATTGCTATGCAAAAGACGATGAAGGCAAAATCCCTTCGAATCATATTCCTGGAGGAGCTGGTAATGAGAAGCTGCAGAAACTCCTCACTCGCCATATGGAAGAGCAAAGAAAACGGAAAGCCCTCATGTCATGCCGTGAAGGAAAAGCAATGGCGGAGTTTGAAGAAGCAATATCACAAATTGTAGGATTACAGGACCTCAAAATGCAATTGCGTAGATGGGCCAGGGGAATGCTTTTTGATGAGAAACGACGAGCTATGGGCTTAGGGATTGCTAGCAGAAGGGCTCCCCATATGGCATTTCTTGGCAATCCAGGAACAGGTAAAACAATGGTTGCTCGGATTCTTGGAAAGCTTCTTCATATGGTTGGGGTTCTCCCTACCGACAAAGTTACTGAAGTACAGCGAACTGATCTTGTTGGAGAATTTGTGGGGCACACTGGACCAAAAACTAGGCGAAAGATACAGGATGCTGAGGGTGGAATTCTGTTTGTGGATGAAGCTTACAGGTTGATACCGATGCAAAAATCTGATGATAAGGATTACGGTGTGGAGGCCTTGGAGGAGATAATGTCTGTAATGGACAATGGCAAGATAGTTGTGATATTTGCTGGATACTGTGAGCCAATGAAGCGCGTCATCGCCTCCAACGACGGCTTCTGTAGGAGGGTCACAAAGTTCTTTTATTTTGACGATTTCACCACAACAGAATTAGCAGAGATCTTACATCTGAAGATGAATAACCCAACTGAGAGCAGTTTGCTGTATGGGTTCAAGCTGGACCCAAGCTGCAGCATCGAGGTCGTTGGAGAGCTGATTGCCAGGGAGACAACTGAACAGCGGCGTAAACAGATGAATGGTGGCCTTGTAGACACGCTGCTCATCAATGCCCGTGAGAATCTAGATCTACGTCTTGATTTCAACTGCGACGATGCGAATACTATGATCACAATCACATTGGAAGACCTGGAAGCTGGCCTTAAGCAGATCTCCAAACAGCGGCAGTTGCAGTGACACCAACCAATTTGGAGACAAATTTTTGGTTATAATTGGAAGCTCATCGACATCAGACAAAGTTTCAGTCAGGTTCAAGGATTTTGATGGAATCAAATAGTGTGATTTGGTCCAATTTTTTTGCTGGCTATTCTTTCTGTTGTATCTATTCACATTGGTAGGTAAGATTTATGCCCTTCTACAATAGCACTAATACGCATGTAGTTCTTTATTATTCCCATTGAGGTATATAAGCCTTTGTAAATACATTTCTTGCATTACGAAGCATCT ] [+] EMBL OSC107381 [ TTTTGATGAGAAACGACGAGCTATGGGNTTAGGGATTGCTAGCAGAAGGGCTCCCCATATGGCATTTCTTGGCAATCCAGGAACAGGTAAAACAATGGTTGCTCGGATTCTTGGAAAGCTTCTTCATATGGTTGGGGTTCTCCCTACCGACAAAGTTACTGAAGTACAGCGAACTGATCTTGTTGGAGAATTTGTGGGGCACACTGGACCAAAAACTAGGCGAAAGATACAGGATGCTGAGGGTGGAATTCTGTTTGTGGATGAAGCTTACAGGTTGATACCGATGCAAAAATCTGATGATAAGGATTACGGTGTTGAGGCCTTGGAGGAGATAATG ] consensusID : consensus_7276#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 309 fasta sequence [CGAGCNNNNNNACACACTATCACAGGGAGGGGAGCAGGAGAGGGAGGAGATGCCGGTGCCGGGGAGCCAGAACGGGCGGCCGAGGCCGGCGAAGGCGGAGACCATCCACGGCCTCGCCCGCGCCGGCGACCTCGCCGGCGTCCAGAGGAAGCTGCAGGAGAATCCCGCCCTCATCAACGACCGGAACCCCGTCATGTCCCAAACACCGCTTCATGTCGCAGCTGGCTANANNNACACTGGCATANNCANNTTCTTGCTTGATTTCCAAGGCACGGANNNNNNNNAGCTGGANNNAAAGANNNANNNTAA] [+] EMBL CF196657 [CGAGCNNNNNNACACACTATCACAGGGAGGGGAGCAGGAGAGGGAGGAGATGCCGGTGCCGGGGAGCCAGAACGGGCGGCCGAGGCCGGCGAAGGCGGAGACCATCCACGGCCTCGCCCGCGCCGGCGACCTCGCCGGCGTCCAGAGGAAGCTGCAGGAGAATCCCGCCCTCATCAACGACCGGAACCCCGTCATGTCCCAAACACCGCTTCATGTCGCAGCTGGCTANANNNACACTGGCATANNCANNTTCTTGCTTGATTTCCAAGGCACGGANNNNNNNNAGCTGGANNNAAAGANNNANNNTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7276#0 GCCCCCCGTCGCCTCCCTTTCTTCCTCGTCTCCTCCTCCTTTTCACACGCGCAAGCTGCT 60 consensus_7276#1 ------------------------------------------------------------ consensus_7276#0 CGAGCGAGCGCGCTCACACTATCACAGGGAGGGGAGCAGGAGAGGGAGGAGATGCCGGTG 120 consensus_7276#1 CGAGCNNNNNNA--CACACTATCACAGGGAGGGGAGCAGGAGAGGGAGGAGATGCCGGTG 58 ***** ********************************************** consensus_7276#0 CCGGGGAGCCAGAACGGGCGGCCGAGGCCGGCGAAGGCGGAGACCATCCACGGCCTCGCC 180 consensus_7276#1 CCGGGGAGCCAGAACGGGCGGCCGAGGCCGGCGAAGGCGGAGACCATCCACGGCCTCGCC 118 ************************************************************ consensus_7276#0 CGCGCCGGCGACCTCGCCGGCGTCCAGAGGAAGCTGCAGGAGAATCCCGCCCTCATCAAC 240 consensus_7276#1 CGCGCCGGCGACCTCGCCGGCGTCCAGAGGAAGCTGCAGGAGAATCCCGCCCTCATCAAC 178 ************************************************************ consensus_7276#0 GACCGGAACCCCGTCATGTCCCAAACACCGCTTCATGTCGCAGCTGGCTACAATAACACT 300 consensus_7276#1 GACCGGAACCCCGTCATGTCCCAAACACCGCTTCATGTCGCAGCTGGCTANANNNACACT 238 ************************************************** * ***** consensus_7276#0 GGCATAGTCAAATTCTTGCTTGATTTCCAAGGCACGGATAAAGTTGAGCTGGAAGCAAAG 360 consensus_7276#1 GGCATANNCANNTTCTTGCTTGATTTCCAAGGCACGGANNNNNNNNAGCTGGANNNAAAG 298 ****** ** ************************** ******* **** consensus_7276#0 AACATGTATGGAGAGACACCCCTGCACATGGCTGTGAAAAACAGTTCTTGTGAATCAGCA 420 consensus_7276#1 ANNNANNNTAA------------------------------------------------- 309 * * consensus_7276#0 AGATTGCTACTTGAACGTGGTGCACATATAGAAGCCAAAGCAAATAATGGCATGGCACCA 480 consensus_7276#1 ------------------------------------------------------------ consensus_7276#0 TTGCATTTAGCTGTCTGGCATGCACTTCAATCTGGAGATTGTAGCACCGTAAGCGTGTTG 540 consensus_7276#1 ------------------------------------------------------------ consensus_7276#0 CTAAGCTACAATGCGGATTGCTATGCAAAAGACGATGAAGGCAAAATCCCTTCGAATCAT 600 consensus_7276#1 ------------------------------------------------------------ consensus_7276#0 ATTCCTGGAGGAGCTGGTAATGAGAAGCTGCAGAAACTCCTCACTCGCCATATGGAAGAG 660 consensus_7276#1 ------------------------------------------------------------ consensus_7276#0 CAAAGAAAACGGAAAGCCCTCATGTCATGCCGTGAAGGAAAAGCAATGGCGGAGTTTGAA 720 consensus_7276#1 ------------------------------------------------------------ consensus_7276#0 GAAGCAATATCACAAATTGTAGGATTACAGGACCTCAAAATGCAATTGCGTAGATGGGCC 780 consensus_7276#1 ------------------------------------------------------------ consensus_7276#0 AGGGGAATGCTTTTTGATGAGAAACGACGAGCTATGGGCTTAGGGATTGCTAGCAGAAGG 840 consensus_7276#1 ------------------------------------------------------------ consensus_7276#0 GCTCCCCATATGGCATTTCTTGGCAATCCAGGAACAGGTAAAACAATGGTTGCTCGGATT 900 consensus_7276#1 ------------------------------------------------------------ consensus_7276#0 CTTGGAAAGCTTCTTCATATGGTTGGGGTTCTCCCTACCGACAAAGTTACTGAAGTACAG 960 consensus_7276#1 ------------------------------------------------------------ consensus_7276#0 CGAACTGATCTTGTTGGAGAATTTGTGGGGCACACTGGACCAAAAACTAGGCGAAAGATA 1020 consensus_7276#1 ------------------------------------------------------------ consensus_7276#0 CAGGATGCTGAGGGTGGAATTCTGTTTGTGGATGAAGCTTACAGGTTGATACCGATGCAA 1080 consensus_7276#1 ------------------------------------------------------------ consensus_7276#0 AAATCTGATGATAAGGATTACGGTGTGGAGGCCTTGGAGGAGATAATGTCTGTAATGGAC 1140 consensus_7276#1 ------------------------------------------------------------ consensus_7276#0 AATGGCAAGATAGTTGTGATATTTGCTGGATACTGTGAGCCAATGAAGCGCGTCATCGCC 1200 consensus_7276#1 ------------------------------------------------------------ consensus_7276#0 TCCAACGACGGCTTCTGTAGGAGGGTCACAAAGTTCTTTTATTTTGACGATTTCACCACA 1260 consensus_7276#1 ------------------------------------------------------------ consensus_7276#0 ACAGAATTAGCAGAGATCTTACATCTGAAGATGAATAACCCAACTGAGAGCAGTTTGCTG 1320 consensus_7276#1 ------------------------------------------------------------ consensus_7276#0 TATGGGTTCAAGCTGGACCCAAGCTGCAGCATCGAGGTCGTTGGAGAGCTGATTGCCAGG 1380 consensus_7276#1 ------------------------------------------------------------ consensus_7276#0 GAGACAACTGAACAGCGGCGTAAACAGATGAATGGTGGCCTTGTAGACACGCTGCTCATC 1440 consensus_7276#1 ------------------------------------------------------------ consensus_7276#0 AATGCCCGTGAGAATCTAGATCTACGTCTTGATTTCAACTGCGACGATGCGAATACTATG 1500 consensus_7276#1 ------------------------------------------------------------ consensus_7276#0 ATCACAATCACATTGGAAGACCTGGAAGCTGGCCTTAAGCAGATCTCCAAACAGCGGCAG 1560 consensus_7276#1 ------------------------------------------------------------ consensus_7276#0 TTGCAGTGACACCAACCAATTTGGAGACAAATTTTTGGTTATAATTGGAAGCTCATCGAC 1620 consensus_7276#1 ------------------------------------------------------------ consensus_7276#0 ATCAGACAAAGTTTCAGTCAGGTTCAAGGATTTTGATGGAATCAAATAGTGTGATTTGGT 1680 consensus_7276#1 ------------------------------------------------------------ consensus_7276#0 CCAATTTTTTTGCTGGCTATTCTTTCTGTTGTATCTATTCACATTGGTAGGTAAGATTTA 1740 consensus_7276#1 ------------------------------------------------------------ consensus_7276#0 TGCCCTTCTACAATAGCACTAATACGCATGTAGTTCTTTATTATTCCCATTGAGGTATAT 1800 consensus_7276#1 ------------------------------------------------------------ consensus_7276#0 AAGCCTTTGTAAATACATTTCTTGCATTACGAAGCATCTTTT 1842 consensus_7276#1 ------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||