These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7298#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 736 fasta sequence [AACCAGAAGAGATTGATCCCAATACCATATCCCCGTCAATGACAAACCTGTGAATCGAAGGAAAATTGCAGAGTTTAAGTCGTTAGGGCTTGAGGCAGTTGAGAAGAAGGATTATCTTTCTGCAGCAGGATTCTACAGTGAGG-CATGGA-CTTGACCTGGATGATGCAACCCTGCTGTCCAATAGGAGCCTTTGCTGGCTTTATCTGGGTGAAGGAGGCAAGGCTTTGGTGGATGCTCATAAATGCAGAAAAATGCGGCCTGACTGGCCAAAGGCCTGCTACCGTCAGGGTGCAGCTTTAATGTTACTGAAGGACTATGTGAGCGCGTGTGAAGCACTTTTTGATGGATTCAAGTTGGATCCTGAGGACGTTGAGATTGAAAATGCATTACGGGAAGCTCTAGAGTTCTTGAAGGTGTCTCAAAGCACTTCGGCTAACTGAACTGTATGGGTTTTGCAGCGGATGTTCTGGTTCATGTTTTACCTTTCCACAAGGCTCTTTTGGCATTGAATCCCTGAACTGGTTCCCTTTCGTAAGTTGAATGGCGAGTCGGTGACTATCGCAGAAGTTTCATTGTGCTAACTCGAACTGACAGTGAGACATCTGAGAGTACTTTTTGCTGCATCTGTGTGATGCCCCATTATAATGTCTATGTAAACATACCGAACTACTGTTACGTCATTTTGTTGATCACTGATTATGTGCATCGGTGCTTCCTAGATAAAAAAAAAAAAAAA] [+] EMBL D42189 [AACCAGAAGAGATTGATCCCAATACCATATCCCCGTCAATGACAAACCTGTGAATCGAAGGAAAATTGCAGAGTTTAAGTCGTTAGGGCTTGAGGCAGTTGAGAAGAAGGATTATCTTTCTGCAGCAGGATTCTACAGTGAGG CATGGA CTTGACCTG ] [+] EMBL BP184447 [ tcACCATATTCCCGTCAATGACAAACCTGTGAATCGAAGGAAAATTGCAGAGTTTAAGTCGTTAGGGCTTGAGGCAGTTGAGAAGAAGGATTATCTTTCTGCAGCAGGATTCTACAGTGAGGCCATGGACCTTGACCCTGATGATGCAACCCTGCTGTCCAATAGGAGCCTTTGCTGGCTTTATCTGGGTGAAGGAGGCAAGGCTTTGGTGGATGCTCATAAATGCAGAAAAATGCGGCCTGACTGGCCAAAGGCCTGCTACCGTCAGGGTGCAGCTTTAATGTTACTGAAGGACTATGTGAGCGCGTGTGAAGCACTTTTTGATGGATTCAAGTTGGATCCTGAGGACGTTGAGATTGAAAATGCATTACGGGAAGCTCTAGAGTTCTTGAAGGTGTCTCAAAGCACTTCGGCTAACTGAACTGTATGGGTTTTGCAGCGGATGTTCTGGTTCATGTTTTACCTTTCCACAAGGCTCTTTTGGCATTGAATCCCTGAACTGGTTCCCTTTCGTAAGTTGAATGGCGAGTCGGTGACTATCGCAGAAGTTTCATTGTGCTAACTCGAACTGACAGTGAGACATCTGAGAGTACTTTTTGCTGCATCTGTGTGATGCCCCATTATAATGTCTATGTAAACATACCGAACTACTGTTACGTCATTTTGTTGATCACTGATTATGTGCATCGGTGCTTCCTAGATAAAAAAAAAAAAAAA] consensusID : consensus_7298#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 440 fasta sequence [TNCNANCNCNGNANTNTNGCNGGGGAGNANTGNGCAAGGNTCGAGGACAATAGCCTGGACATCAAGAAGCAGGACAAAGCTGTGAATCGAAGGAAAATTGCAGAGTTTAAGTCGTTAGGGCTTGAGGCAGTTGAGAAGAAGAATTATCTTTCTGCAGCAGGATTTACAGTGAGATTCCGGTTCTTTCGACGCTCCGGTGTACTTCGAAATAGTCGCCGAGGTACCTCCAGCAGCAGANAAGAGCTCGAGTATGTGTCCGATGGCGGGTTCTCCGAGGAGTAGGCTTCGTCCGTGCCGTCGAGGATGCCTGTNGAGTNGTGTTCCCGCTGCCGTTCAAGTCAAGGCTTAGCTCCAGTTATCTTTTGTTTTCCGCTGCATTTCTGTAAGNTTTTACAATGTTTGTAAGACGTGGANCTGTATGTCAACATTGTCGTTTGTGT] [+] EMBL OSC192 [TNCNANCNCNGNANTNTNGCNGGGGAGNANTGNGCAAGGNTCGAGGACAATAGCCTGGACATCAAGAAGCAGGACAAAGCTGTGAATCGAAGGAAAATTGCAGAGTTTAAGTCGTTAGGGCTTGAGGCAGTTGAGAAGAAGAATTATCTTTCTGCAGCAGGATTTACAGTGAGATTCCGGTTCTTTCGACGCTCCGGTGTACTTCGAAATAGTCGCCGAGGTACCTCCAGCAGCAGANAAGAGCTCGAGTATGTGTCCGATGGCGGGTTCTCCGAGGAGTAGGCTTCGTCCGTGCCGTCGAGGATGCCTGTNGAGTNGTGTTCCCGCTGCCGTTCAAGTCAAGGCTTAGCTCCAGTTATCTTTTGTTTTCCGCTGCATTTCTGTAAGNTTTTACAATGTTTGTAAGACGTGGANCTGTATGTCAACATTGTCGTTTGTGT] consensusID : consensus_7298#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 271 fasta sequence [GGATTCTTCAGTGAGGCCATGGACCTTGACCGTGATGATGCAACCCTGCTGTCCAATAGGAGCCTTTGTTGGGTTTATGTGGGTGAAGGAGGCAAGGCTTTGGTGGATGATCATAAACGCAGAAAAATGAGGCTTGACTGGCCAAAGGCGTGTTACCGTCAGGGTGCAGATTTAATGTTACTGAAGGATTATGTGAGTGCGTGTGAAGCACTTTTTGATGGATTCAAGTTGGATCTGGAGGTTGTTGAGATGGAAAACGCATTACGGGAAG] [-] EMBL CB643233 [GGATTCTTCAGTGAGGCCATGGACCTTGACCGTGATGATGCAACCCTGCTGTCCAATAGGAGCCTTTGTTGGGTTTATGTGGGTGAAGGAGGCAAGGCTTTGGTGGATGATCATAAACGCAGAAAAATGAGGCTTGACTGGCCAAAGGCGTGTTACCGTCAGGGTGCAGATTTAATGTTACTGAAGGATTATGTGAGTGCGTGTGAAGCACTTTTTGATGGATTCAAGTTGGATCTGGAGGTTGTTGAGATGGAAAACGCATTACGGGAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7298#0 ----------------------------AACCAGAAGAGATTGATCCCAATACC----AT 28 consensus_7298#2 ------------------------------------------------------------ consensus_7298#1 TNCNANCNCNGNANTNTNGCNGGGGAGNANTGNGCAAGGNTCGAGGACAATAGCCTGGAC 60 consensus_7298#0 ATCCCCGTCAATGACAAACCTGTGAATCGAAGGAAAATTGCAGAGTTTAAGTCGTTAGGG 88 consensus_7298#2 ------------------------------------------------------------ consensus_7298#1 ATCAAGAAGCAGGACAAAGCTGTGAATCGAAGGAAAATTGCAGAGTTTAAGTCGTTAGGG 120 consensus_7298#0 CTTGAGGCAGTTGAGAAGAAGGATTATCTTTCTGCAGCAGGATTCTACAGTGAGGC-ATG 147 consensus_7298#2 ---------------------------------------GGATTCTTCAGTGAGGCCATG 21 consensus_7298#1 CTTGAGGCAGTTGAGAAGAAGAATTATCTTTCTGCAGCAGGATT-TACAGTGAGATTCCG 179 ***** * ******* * consensus_7298#0 GAC-TTGACCTGGATGATGCAACCCTGCTGTCCAATAGGAGCCTTTGCTGGCTTTATCTG 206 consensus_7298#2 GACCTTGACCGTGATGATGCAACCCTGCTGTCCAATAGGAGCCTTTGTTGGGTTTATGTG 81 consensus_7298#1 GTTCTT----TCGACGCTCCGGTG-TACTTCGAAATAGTCGCCGAGGTACCTCCAGCAGC 234 * ** ** * * * * ** ***** *** * consensus_7298#0 GGTGAAGGAGGCAAGGCTTTGGTGGATGCTCATAAATGCAGAAAAATGCGGCCTGACTGG 266 consensus_7298#2 GGTGAAGGAGGCAAGGCTTTGGTGGATGATCATAAACGCAGAAAAATGAGGCTTGACTGG 141 consensus_7298#1 AGANAAGAGCTCGAGTATGTGTCCGATGG-CGGGTTCTCCGAGGAGTAGGCTTCGTCCGT 293 * *** * ** * ** **** * * ** * * * * * * consensus_7298#0 CCAAAGGCCTGCTACCGTCAGGGTGCAGCTTTAATGTTACTGAAGGACTATGTGAGCGCG 326 consensus_7298#2 CCAAAGGCGTGTTACCGTCAGGGTGCAGATTTAATGTTACTGAAGGATTATGTGAGTGCG 201 consensus_7298#1 GCCGTCGAGGATGCCTGTNGAGTNGTGTTCCCGCTGCCGTTCAAGTCAAGGCTTAGCTCC 353 * * * ** * * ** * *** * ** * consensus_7298#0 TGTGAAGC---ACTTTTTGATGGATTCAAGTTGGATCCTGAGGACGTTGAGATTGAAAAT 383 consensus_7298#2 TGTGAAGC---ACTTTTTGATGGATTCAAGTTGGATCTGGAGGTTGTTGAGATGGAAAAC 258 consensus_7298#1 AGTTATCTTTTGTTTTCCGCTGCATTTCTGTAAGNTTTTACAATGTTTGTAAGACGTGGA 413 ** * *** * ** *** ** * * *** * consensus_7298#0 GCATTACGGGAAGCTCTAGAGTTCTTGAAGGTGTCTCAAAGCACTTCGGCTAACTGAACT 443 consensus_7298#2 GCATTACGGGAAG----------------------------------------------- 271 consensus_7298#1 NCTGTATGTCAA-CATTGTCGTTTGTGT-------------------------------- 440 * ** * ** consensus_7298#0 GTATGGGTTTTGCAGCGGATGTTCTGGTTCATGTTTTACCTTTCCACAAGGCTCTTTTGG 503 consensus_7298#2 ------------------------------------------------------------ consensus_7298#1 ------------------------------------------------------------ consensus_7298#0 CATTGAATCCCTGAACTGGTTCCCTTTCGTAAGTTGAATGGCGAGTCGGTGACTATCGCA 563 consensus_7298#2 ------------------------------------------------------------ consensus_7298#1 ------------------------------------------------------------ consensus_7298#0 GAAGTTTCATTGTGCTAACTCGAACTGACAGTGAGACATCTGAGAGTACTTTTTGCTGCA 623 consensus_7298#2 ------------------------------------------------------------ consensus_7298#1 ------------------------------------------------------------ consensus_7298#0 TCTGTGTGATGCCCCATTATAATGTCTATGTAAACATACCGAACTACTGTTACGTCATTT 683 consensus_7298#2 ------------------------------------------------------------ consensus_7298#1 ------------------------------------------------------------ consensus_7298#0 TGTTGATCACTGATTATGTGCATCGGTGCTTCCTAGATAAAAAAAAAAAAAAA 736 consensus_7298#2 ----------------------------------------------------- consensus_7298#1 ----------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||