These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7452#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 816 fasta sequence [AATGATTAGTTTTATTTTACAAGTTATGTTTCCAACAAATGAAGTATAACTCTGATTACATTTATTTTAGCCAGACTGGCCCAAGAGTAGGCTAAGCAAATTCATTAAGATTATGAGATGGTGTTACAAACTAAGCGTCCACACGAAGTTGTCGAAACCGGTTACAAAGAGTGGGAGAGAAAAAACTGCAAAAGGAATAATGCCAATCGTTTTTCGCCTACCATGAAGCCTGCCTCCCTCCAGATTGTGATTTCTTTGATGTCACCAAAGAGCTGCACAACCATACAACTTGCTGAGACAATCTCTGAAGAAGAGTGTACCGAAAACTTTTCTGAGATAATCTCTGAAGCTTCTCCTTGAAGCCATCCGCCAATCAGCCAAGTCTACATTGAGGTCACTGGGAAGCGGAAAGCCAACATTCACCTAGCTCCTGAGCAATCTCCAAATCCTCTTTTCTGTAGATTGTCAGCCATGAGGCATCTGCCCTTTAGCGCAAGCCACATGAAAATCTTTACTCTGGACAGCAACAGGGATTGCCAAAGCAGCTTGCCACAGCTCCATATCATTTTCATAAGGAAGAAAACATGGAAAACTTCAGACATCGTAGTTTACGTCTGTTGTTTTAGAGCCATTAGACAATCAGAATATGAAGGCATAAAAATACATAAAACGGCATGTACTTCGGAGTATACTCTTATGAAGCTATATAAATTAAAGGATGCGACCACACAAATGAAAATTGAAACCGGATCTAGATCAAAGCTTATCGCAATGCAGTTAATAAGCTGAACATATAATTTACTTCAATATTCCAGC] [+] EMBL CB660572 [AATGATTAGTTTTATTTTACAAGTTATGTTTCCAACAAATGAAGTATAACTCTGATTACATTTATTTTAGCCAGACTGGCCCAAGAGTAGGCTAAGCAAATTCATTAAGATTATGAGATGGTGTTACAAACTAAGCGTCCACACGAAGTTGTCGAAACCGGTTACAAAGAGTGGGAGAGAAAAAACTGCAAAAGGAATAATGCCAATCGTTTTTCGCCTACCATGAAGCCTGCCTCCCTCCAGATTGTGATTTCTTTGATGTCACCAAAGAGCTGCACAACCATACAACTTGCTGAGACAATCTCTGAAGAAGAGTGTACCGAAAACTTTTCTGAGATAATCTCTGAAGCTTCTCCTTGAAGCCATCCGCCAATCAGCCAAGTCTACATTGAGGTCACTGGGAAGCGGAAAGCCAACATTCACCTAGCTCCTGAGCAATCTCCAAATCCTCTTTTCTGTAGATTGTCAGCCATGAGGCATCTGCCCTTTAGCGCAAGCCACATGAAAATCTTTACTCTGGACAGCAACAGGGATTGCCAAAGCAGCTTGCCACAGCTCCATATCATTTTCATAAGGAAGAAAACATGGAAAACTTCAGACATCGTAGTTTACGTCTGTTGTTTTAGAGCCATTAGACAATCAGAATATGAAGGCATAAAAATACATAAAACGGCATGTACTTCGGAGTATACTCTTATGAAGCTATATAAATTAAAGGATGCGACCACACAAATGAAAATTGAAACCGGATCTAGATCAAAGCTTATCGCAATGCAGTTAATAAGCTGAACATATAATTTACTTCAATATTCCAGC] [+] EMBL CB670637 [AATGATTAGTTTTATTTTACAAGTTATGTTTCCAACAAATGAAGTATAACTCTGATTACATTTATTTTAGCCAGACTGGCCCAAGAGTAGGCTAAGCAAATTCATTAAGATTATGAGATGGTGTTACAAACTAAGCGTCCACACGAAGTTGTCGAAACCGGTTACAAAGAGTGGGAGAGAAAAAACTGCAAAAGGAATAATGCCAATCGTTTTTCGCCTACCATGAAGCCTGCCTCCCTCCAGATTGTGATTTCTTTGATGTCACCAAAGAGCTGCACAACCATACAACTTGCTGAGACAATCTCTGAAGAAGAGTGTACCGAAAACTTTTCTGAGATAATCTCTGAAGCTTCTCCTTGAAGCCATCCGCCAATCAGCCAAGTCTACATTGAGGTCACTGGGAAGCGGAAAGCCAACATTCACCTAGCTCCTGAGCAATCTCCAAATCCTCTTTTCTGTAGATTGTCAGCCATGAGGCATCTGCCCTTTAGCGCAAGCCACATGAAAATCTTTACTCTGGACAGCAACAGGGATTGCCAAAGCAGCTTGCCACAGCTCCATATCATTTTCATAAGGAAGAAAACATGGAAAACTTCAGACATCGTAGTTTACGTCTGTTGTTTTAGAGCCATTAGACAATCAGAATATGAAGGCATAAAAATACATAAAACGGCATGTACTTCGGAGTATACTCTTATGAAGCTATATAAATTAAAGGATGCGACCACACAAATGAAAATTGAAACCGGATCTAGAT ] consensusID : consensus_7452#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 808 fasta sequence [CTTTTTTTTTTGGCCCAAGAGTAGGCTAAGCAAATTCATTAAGATTATGAGATGGTGTTACAAACTAAGCGTCCACACGAAGTTGTCGAAACCGGTTACAAAGAGTGGGAGAGAAAAAACTGCAAAAGGAATAATGCCAATCGTTTTTCGCCTACCATGAAGCCTGCCTCCCTCCAGATTGTGATTTCTTTGATGTCACCAAAGAGCTGCACAACCATACAACTTGCTGAGACAATCTCTGAAGAAGAGTGTACCGAAAACTTTTCTGAGATAATCTCTGAAGCTTCTCCTTGAAGCCATCCGCCAATCAGCCAAGTCTACATTGAGGTCACTGGGAAGCGGAAAGCCAACATTCACCTAGCTCCTGAGCAATCTCCAAATCCTCTTTTCTGTAGATTGTCAGCCATGAGGCATCTGCCCTTTAGCGCAAGCCACATGAAAATCTTTACTCTGGACAGCAACAGGGATTGCCAAAGCAGCTTGCCACAGCTCCATATCATTTTCATAAGGAAGAAAACATGGAAAACTTCAGACATCGTAGTTTACGTCTGTTGTTTTAGAGCCATTAGACAATCAGAATATGAAGGCATAAAAATACATAAAACGGCATGTACTTCGGAGTATACTCTTATGAAGCTATATAAATTAAAGGATGCGACCACACAAATGAAAATTGAAACCGGATCTAGATCAAAGCTTATCGCAATGCAGTTAATAAGCTGAACATATAATTTACTTCAATATTCCAGCATTTACTATACAAATAGCTCCTAAATACCGTGCGCCAAACAGTGAAATGCCATGGTGA] [+] EMBL CB641749 [CTTTTTTTTTTGGCCCAAGAGTAGGCTAAGCAAATTCATTAAGATTATGAGATGGTGTTACAAACTAAGCGTCCACACGAAGTTGTCGAAACCGGTTACAAAGAGTGGGAGAGAAAAAACTGCAAAAGGAATAATGCCAATCGTTTTTCGCCTACCATGAAGCCTGCCTCCCTCCAGATTGTGATTTCTTTGATGTCACCAAAGAGCTGCACAACCATACAACTTGCTGAGACAATCTCTGAAGAAGAGTGTACCGAAAACTTTTCTGAGATAATCTCTGAAGCTTCTCCTTGAAGCCATCCGCCAATCAGCCAAGTCTACATTGAGGTCACTGGGAAGCGGAAAGCCAACATTCACCTAGCTCCTGAGCAATCTCCAAATCCTCTTTTCTGTAGATTGTCAGCCATGAGGCATCTGCCCTTTAGCGCAAGCCACATGAAAATCTTTACTCTGGACAGCAACAGGGATTGCCAAAGCAGCTTGCCACAGCTCCATATCATTTTCATAAGGAAGAAAACATGGAAAACTTCAGACATCGTAGTTTACGTCTGTTGTTTTAGAGCCATTAGACAATCAGAATATGAAGGCATAAAAATACATAAAACGGCATGTACTTCGGAGTATACTCTTATGAAGCTATATAAATTAAAGGATGCGACCACACAAATGAAAATTGAAACCGGATCTAGATCAAAGCTTATCGCAATGCAGTTAATAAGCTGAACATATAATTTACTTCAATATTCCAGCATTTACTATACAAATAGCTCCTAAATACCGTGCGCCAAACAGTGAAATGCCATGGTGA] [+] EMBL CB660933 [ CGCCCACACGAAGCTGCCCTTACCGGCTACCCCGAGTGGGAGAGAAAAAACTGCAAAAGGAATAATGCCCATCGTTTTTCGCCTACCATGAAGCCTGCCTCCCTCCAGATTGTGATTTCTTTGATGTCACCAAAGAGCTGCCCAACCATACAACTTGCTGAGACAATCTCTGAAGAAGAGTGTACCGAAAACTTTTCTGAGATAATCTCTGAAGCTTCTCCTTGAAGCCATCCGCCAATCAGCCAAGTCTACATTGAGGTCACTGGGAAGCGGAAAGCCAACATTCACCTAGCTCCTGAGCAATCTCCAAATCCTCTTTTCTGTAGATTGTCAGCCATGAGGCATCTGCCCTTTAGCGCAAGCCACATGAAAATCTTTACTCTGGACAGCAACAGGGATTGCCCAAGCAGCTTGCCACAGCTCCATATCATTTTCATAAGGAAGAAACCCTGCAAAACTTCCGACCTCGTACTTTAC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7452#0 AATGATTAGTTTTATTTTACAAGTTATGTTTCCAACAAATGAAGTATAACTCTGATTACA 60 consensus_7452#1 ----------------------------------------------------------CT 2 * consensus_7452#0 TTTATTTTAGCCAGACTGGCCCAAGAGTAGGCTAAGCAAATTCATTAAGATTATGAGATG 120 consensus_7452#1 TTTTTTTT--------TGGCCCAAGAGTAGGCTAAGCAAATTCATTAAGATTATGAGATG 54 *** **** ******************************************** consensus_7452#0 GTGTTACAAACTAAGCGTCCACACGAAGTTGTCGAAACCGGTTACAAAGAGTGGGAGAGA 180 consensus_7452#1 GTGTTACAAACTAAGCGTCCACACGAAGTTGTCGAAACCGGTTACAAAGAGTGGGAGAGA 114 ************************************************************ consensus_7452#0 AAAAACTGCAAAAGGAATAATGCCAATCGTTTTTCGCCTACCATGAAGCCTGCCTCCCTC 240 consensus_7452#1 AAAAACTGCAAAAGGAATAATGCCAATCGTTTTTCGCCTACCATGAAGCCTGCCTCCCTC 174 ************************************************************ consensus_7452#0 CAGATTGTGATTTCTTTGATGTCACCAAAGAGCTGCACAACCATACAACTTGCTGAGACA 300 consensus_7452#1 CAGATTGTGATTTCTTTGATGTCACCAAAGAGCTGCACAACCATACAACTTGCTGAGACA 234 ************************************************************ consensus_7452#0 ATCTCTGAAGAAGAGTGTACCGAAAACTTTTCTGAGATAATCTCTGAAGCTTCTCCTTGA 360 consensus_7452#1 ATCTCTGAAGAAGAGTGTACCGAAAACTTTTCTGAGATAATCTCTGAAGCTTCTCCTTGA 294 ************************************************************ consensus_7452#0 AGCCATCCGCCAATCAGCCAAGTCTACATTGAGGTCACTGGGAAGCGGAAAGCCAACATT 420 consensus_7452#1 AGCCATCCGCCAATCAGCCAAGTCTACATTGAGGTCACTGGGAAGCGGAAAGCCAACATT 354 ************************************************************ consensus_7452#0 CACCTAGCTCCTGAGCAATCTCCAAATCCTCTTTTCTGTAGATTGTCAGCCATGAGGCAT 480 consensus_7452#1 CACCTAGCTCCTGAGCAATCTCCAAATCCTCTTTTCTGTAGATTGTCAGCCATGAGGCAT 414 ************************************************************ consensus_7452#0 CTGCCCTTTAGCGCAAGCCACATGAAAATCTTTACTCTGGACAGCAACAGGGATTGCCAA 540 consensus_7452#1 CTGCCCTTTAGCGCAAGCCACATGAAAATCTTTACTCTGGACAGCAACAGGGATTGCCAA 474 ************************************************************ consensus_7452#0 AGCAGCTTGCCACAGCTCCATATCATTTTCATAAGGAAGAAAACATGGAAAACTTCAGAC 600 consensus_7452#1 AGCAGCTTGCCACAGCTCCATATCATTTTCATAAGGAAGAAAACATGGAAAACTTCAGAC 534 ************************************************************ consensus_7452#0 ATCGTAGTTTACGTCTGTTGTTTTAGAGCCATTAGACAATCAGAATATGAAGGCATAAAA 660 consensus_7452#1 ATCGTAGTTTACGTCTGTTGTTTTAGAGCCATTAGACAATCAGAATATGAAGGCATAAAA 594 ************************************************************ consensus_7452#0 ATACATAAAACGGCATGTACTTCGGAGTATACTCTTATGAAGCTATATAAATTAAAGGAT 720 consensus_7452#1 ATACATAAAACGGCATGTACTTCGGAGTATACTCTTATGAAGCTATATAAATTAAAGGAT 654 ************************************************************ consensus_7452#0 GCGACCACACAAATGAAAATTGAAACCGGATCTAGATCAAAGCTTATCGCAATGCAGTTA 780 consensus_7452#1 GCGACCACACAAATGAAAATTGAAACCGGATCTAGATCAAAGCTTATCGCAATGCAGTTA 714 ************************************************************ consensus_7452#0 ATAAGCTGAACATATAATTTACTTCAATATTCCAGC------------------------ 816 consensus_7452#1 ATAAGCTGAACATATAATTTACTTCAATATTCCAGCATTTACTATACAAATAGCTCCTAA 774 ************************************ consensus_7452#0 ---------------------------------- consensus_7452#1 ATACCGTGCGCCAAACAGTGAAATGCCATGGTGA 808 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||