These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7540#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 633 fasta sequence [CACAGCTCTCATCTCGCAGCCAAAACCACTTTACTATCTCGCAGCCAACCTGTAGCAAAAGCTAATCAAACTAGCTATCAATCATGAGCTC---CGGCGGCGTCTGCGGCGGCGGCGATCGTGGACCTGGCGCACAACGGCGACCTGCGGGCGAACTGGGTGGCCATATGCATGCAGTTCCACGGCTTCTGCCAGCGAACCAGCGGATCCGTCGTTGCCTCCTTCCTCACCGTCGTCATCCTCATGTTCCTCGTCATCTTGGCCGCCTGCTCTATCCGCAAGCGCTAGCTTAATCATCTTGCTAGCTAATTAAAAAAGATTGTGCTTAATTATACATGCATATAATATTTACGTTTGATTTCTATCTGCATGCGCGAGCGAGTGCGTTTTTATTTTCGAATTGTAATCCTCTTCTGTACTACATGCATTTCTTTACTTGTGAGCATTGGCATTGGCGAGTGATCGAGCAGTAGTGCATTGTAAAAGTTCACCTGTGCATCTATCGTTTCACTTTCTTTCTTTCTTGTAAAAGATCAACGTTGTGTGATCATCGTGCTCTGTAATCTGAATTGAACAGCTTGTTTAAAACAACCCTTTTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF291280 [CACAGCTCTCATCTCGCAGCCAAAACCACTTTACTATCTCGCAGCCAACCTGTAGCAAAAGCTAATCAAACTAGCTATCAATCATGAGCTC CGGCGGCGTCTGCGGCGGCGGCGATCGTGGACCTGGCGCACAACGGCGACCTGCGGGCGAACTGGGTGGCCATATGCATGCAGTTCCACGGCTTCTG ] [+] EMBL AK105205 [ TCTCATCTCGCAGCCAAAACCACTTTACTATCTCGCAGCCAACCTGTAGCAAAAGCTAATCAAACTAGCTATCAATCATGAGCTCCGGCGGCGGCGTCTGCGGCGGCGGCGATCGTGGACCTGGCGCACAACGGCAACCTGCGGGCGAACTGGGTGGCCATATGCATGCAGTTCCACGGCTTCTGCCAGCGAACCAGCGGATCCGTCGTTGCCTCCTTCCTCACCGTCGTCATCCTCATGTTCCTCGTCATCTTGGCCGCCTGCTCTATCCGCAAGCGCTAGCTTAATCATCTTGCTAGCTAATTAAAAAAGATTGTGCTTAATTATACATGCATATAATATTTACGTTTGATTTCTATCTGCATGCGCGAGCGAGTGCGTTTTTATTTTCGAATTGTAATCCTCTTCTGTACTACATGCATTTCTTTACTTGTGAGCATTGGCATTGGCGAGTGATCGAGCAGTAGTGCATTGTAAAAGTTCACCTGTGCATCTATCGTTTCACTTTCTTTCTTTCTTGTAAAAGATCAACGTTGTGTGATCATCGTGCTCTGTAATCTGAATTGAACAGCT ] [-] EMBL CF291281 [ GTTTGATTTCTATCTGCATGCGCGAGCGAGTGCGTTTTTATTTTCGAATTGTAATCCTTTTTTGTACTACATGCATTTTTTTACTTGTGAGCATTGGCATTGGCGAGTGATCGACCAGTAGTGCATTGTAAAAGTTCCCCTGGGCATCTATCGTTTCCCTTTCTTTTTTTTTTGTAAAAGATCAACGTTGGGTGATCATCGGGCTCTGTAATTTGAATTGAACAGCTTGTTTAAAACAACCCTTTTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_7540#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence [CGCAGCCAAAACCACTTTACTATCTCGCAGCCAACCTGTAGCAAAAGCTAATCAAACTAGCTATCAATCATGAGCTCCGGCGAGCCTGCCGCCGTCAGCATCCCCATCCACGACCACCATGGCAAGGCCCCGGCCACCTCCTCCGCCGTCCCTGCTGCTGCTGCTGCTGCGCCCGCCGCGGCTCCCGCGGTGGCGCCACGCAAGGTCGGCATCCCGTTCTTCCGGCGCGGCGACCA] [+] EMBL CA757224 [CGCAGCCAAAACCACTTTACTATCTCGCAGCCAACCTGTAGCAAAAGCTAATCAAACTAGCTATCAATCATGAGCTCCGGCGAGCCTGCCGCCGTCAGCATCCCCATCCACGACCACCATGGCAAGGCCCCGGCCACCTCCTCCGCCGTCCCTGCTGCTGCTGCTGCTGCGCCCGCCGCGGCTCCCGCGGTGGCGCCACGCAAGGTCGGCATCCCGTTCTTCCGGCGCGGCGACCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7540#0 CACAGCTCTCATCTCGCAGCCAAAACCACTTTACTATCTCGCAGCCAACCTGTAGCAAAA 60 consensus_7540#1 --------------CGCAGCCAAAACCACTTTACTATCTCGCAGCCAACCTGTAGCAAAA 46 ********************************************** consensus_7540#0 GCTAATCAAACTAGCTATCAATCATGAGCTCCGGCGGCGTCTGCGGCGGCGGCGATCGTG 120 consensus_7540#1 GCTAATCAAACTAGCTATCAATCATGAGCTCCGGCGA-GCCTGCCGCCGTCAGCATCCCC 105 ************************************ * **** ** * *** consensus_7540#0 GACCTGGCGCACAACGGCGACCTGCGGGCGAACTGGGTGGCCATATGCATGCAGTTCCAC 180 consensus_7540#1 ATCCACGACCACCATGGCAAGGCCCCGGCCACCTCCTCCGCCGTC--CCTGCTG--CTGC 161 ** * *** * *** * * *** * ** *** * * *** * * * consensus_7540#0 GGCTTCTGCCAGCGAACCAGCGGATCCGTCGTTGCCTCCTTCCTCACCGTCGTCATCCTC 240 consensus_7540#1 TGCTGCTGCGCCCG---CCGCGGCTCCCGCGGTGGCGCCA--CGCAAGGTCGGCATCCCG 216 *** **** ** * **** *** ** ** * ** * ** **** ***** consensus_7540#0 ATGTTCCTCGTCATCTTGGCCGCCTGCTCTATCCGCAAGCGCTAGCTTAATCATCTTGCT 300 consensus_7540#1 TTCTTC--CGGCGCGGCGACCA-------------------------------------- 236 * *** ** * * ** consensus_7540#0 AGCTAATTAAAAAAGATTGTGCTTAATTATACATGCATATAATATTTACGTTTGATTTCT 360 consensus_7540#1 ------------------------------------------------------------ consensus_7540#0 ATCTGCATGCGCGAGCGAGTGCGTTTTTATTTTCGAATTGTAATCCTCTTCTGTACTACA 420 consensus_7540#1 ------------------------------------------------------------ consensus_7540#0 TGCATTTCTTTACTTGTGAGCATTGGCATTGGCGAGTGATCGAGCAGTAGTGCATTGTAA 480 consensus_7540#1 ------------------------------------------------------------ consensus_7540#0 AAGTTCACCTGTGCATCTATCGTTTCACTTTCTTTCTTTCTTGTAAAAGATCAACGTTGT 540 consensus_7540#1 ------------------------------------------------------------ consensus_7540#0 GTGATCATCGTGCTCTGTAATCTGAATTGAACAGCTTGTTTAAAACAACCCTTTTGTTAA 600 consensus_7540#1 ------------------------------------------------------------ consensus_7540#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 633 consensus_7540#1 --------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||