These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7555#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1302 fasta sequence [ATGCAGCTGCGGGCTGAAATTCTGAATAAATGCTTGGGATTCTGCTTTGCATCATAAAACAGACAAAGATACAGCAGCCGATCGCAACTTCACGCCATCATCGTCCCACTTTGTCTCTGGAGCAGTGGCACCGGCAATATATGGCTGGCCACACAACACCACATGGCAATTCAAATTAAATACTGGGACCGAAATAGGATGCCAAAGTCCAGCAATTAAAAAGAAAATGAATCGATAATGTCATTAAATCTCTAAGATAAAGCTACAGATTACAAGCTTTCGGGACATCTGTATATTTGGTCCATTGGTGTTCCCAGAACAGAAACAAACATGAAGACAGGAAAACATTTTCCCAGAACAGAACTGCCCACAAAAACATAAAGGAAATGAGTGAATACCTTTCCACTATTCACAGGAGCCATTACAGCAACATGTTCTTTGTCCACACCAAACTCATAAAAGTAATATGTCCTGCAGAACCAATCTCTCATGACCAAAATCAAAATACAAGAACAATTCTGTCCAAATTGGGACACTTATTGATGAGGGATAAGATTTTTTTTTTGCCTCAAAATAAATAGAAAAGGGCATATAGTACCTTATATCATCTTCATCCTTAACTTTAATTGTTCGAGCTGAGTATAATTTTGCGCCACCTATGAAATGAGACAAAAGAATTTACAAACAAATTGGAAGAGCTAAGTCAGATATTTCCAAATGAGTACATTATGCTAGCACTACATGCTAACAGAATATTTTTGCTTCATGTTTCCTCATATAATTTTTTGAAGTGATGGAAACAAAAAATGGATACAAGTTTATATTTCTTTGAATATTTTAACCAAGCATCAATATTGATCATACAAAGTTTTACGAAGACAACAGTAGATAACGACAAAGTTGTACAATGTGAAAGAAACAGTTCAAAATAGAATGTAGTAAGCATGTGAGTACATTGTGCAACTCATTAAGAAAGCAGTTAATAGTGCACTTCCTTGCTGGACATTTATTTTAAAAATGATGCAAAATTAACCAACATCATAAGAACATTGTTAAGATAAGATGCCCCTTCAATTTGTAAACATGATGTTTTAGATGTTAGGTCATTCAGGTGAAACATCATATATACAGCAGCGCCCACACAAGAAGCTAGATCAAGAGTTAGCAATTTCCTTTGATAAGTGAAAACTGTGAATATGCCGTGTCCTTATTCATCTTAGAAACTTATTTTAAAAGCAAAGTACATCTCTGAAGTCTAAGATAACAGTAATCACCAGGTACAAATATCTTTGATGCCTCCTT] [+] EMBL CB665245 [ATGCAGCTGCGGGCTGAAATTCTGAATAAATGCTTGGGATTCTGCTTTGCATCATAAAACAGACAAAGATACAGCAGCCGATCGCAACTTCACGCCATCATCGTCCCACTTTGTCTCTGGAGCAGTGGCACCGGCAATATATGGCTGGCCACACAACACCACATGGCAATTCAAATTAAATACTGGGACCGAAATAGGATGCCAAAGTCCAGCAATTAAAAAGAAAATGAATCGATAATGTCATTAAATCTCTAAGATAAAGCTACAGATTACAAGCTTTCGGGACATCTGTATATTTGGTCCATTGGTGTTCCCAGAACAGAAACAAACATGAAGACAGGAAAACATTTTCCCAGAACAGAACTGCCCACAAAAACATAAAGGAAATGAGTGAATACCTTTCCACTATTCACAGGAGCCATTACAGCAACATGTTCTTTGTCCACACCAAACTCATAAAAGTAATATGTCCTGCAGAACCAATCTCTCATGACCAAAATCAAAATACAAGAACAATTCTGTCCAAATTGGGACACTTATTGATGAGGGATAAGATTTTTTTTTTGCCTCAAAATAAATAGAAAAGGGCATATAGTACCTTATATCATCTTCATCCTTAACTTTAATTGTTCGAGCTGAGTATAATTTTGCGCCACCTATGAAATGAGACAAAAGAATTTACAAACAAATTGGAAGAGCTAAGTCAGATATTTCCAAATGAGTACATTATGCTAGCACTACATGCTAACAGAATATTTTTGCTTCATGTTTCCTCATA ] [-] EMBL CB665244 [ TATGTCCTGCAGAACCAATCTCTCATGACCAAAATCAAAATACAAGAACAATTCTGTCCAAATTGGGACACTTATTGATGAGGGATAAGATTTTTTTTTTGCCTCAAAATAAATAGAAAAGGTCATATAGTACCTTATATCATCTTCATCCTTAACTTTAATTGTTCGAGCTGAGTATAATTTTGCGCCACCTATGAAATGAGACAAAAGAATTTACAAACAAATTGGAAGAGCTAAGTCAGATATTTCCAAATGAGTACATTATGCTAGCACTACATGCTAACAGAATATTTTTGCTTCATGTTTCCTCATATAATTTTTTGAAGTGATGGAAACAAAAAATGGATACAAGTTTATATTTCTTTGAATATTTTAACCAAGCATCAATATTGATCATACAAAGTTTTACGAAGACAACAGTAGATAACGACAAAGTTGTACAATGTGAAAGAAACAGTTCAAAATAGAATGTAGTAAGCATGTGAGTACATTGTGCAACTCATTAAGAAAGCAGTTAATAGTGCACTTCCTTGCTGGACATTTATTTTAAAAATGATGCAAAATTAACCAACATCATAAGAACATTGTTAAGATAAGATGCCCCTTCAATTTGTAAACATGATGTTTTAGATGTTAGGTCATTCAGGTGAAACATCATATATACAGCAGCGCCCACACAAGAAGCTAGATCAAGAGTTAGCAATTTCCTTTGATAAGTGAAAACTGTGAATATGCCGTGTCCTTATTCATCTTAGAAACTTATTTTAAAAGCAAAGTACATCTCTGAAGTCTAAGATAACAGTAATCACCAGGTACAAATATCTTTGATGCCTCCTT] consensusID : consensus_7555#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1013 fasta sequence [ACTCTTGTATTATCCTTTGGCTGCGTACACCCATTTGGGTGTAGAGGACATGTTTTATCTATCTATTATCTAAAAAAACACGACCAAAAAATAAGATGATATGATTCATCTATGCAGCTGCGGCCTGAAATTCTGAATAAATGCTTGGTATTCTGCTTTGCATCATAAAACAGACAAAGATACAGCAGCCGATCGCAACTTCACGCCATCATCGTCCCACTTTGTCTCTGGAGCAGTGGCACCGGCAATATATGTCTTTCCACTATTCACAGTAGCCATTACAGCAACATGTTCTTTGTCCACACCAAACTCATAAAAGTAATATGTCCTTATATCATCTTCATCCTTAACTTTAATTGTTCGAGCTGAGTATAATTTTGCGCCACCAGGTACAAATATCTTTGATGCCTCCTTTAAAGTGCCCAGGTCTGTTACATCTTTGGCCTCTAGGAATGTGATTTTGAGCTGATTCGATGGCTTAATTACCACGCTTACAAGTTCAGACCTGTCCGGAGACGCGAAGCGAGCAGCGTATGTCCTGGGCTTCGCCTTGTCGCCGTAGTAGGTCACCCCGACGTTGAACTCCTCGGGCTCCAAGATGTCGTCGAAGGAAGGGGGAACGCGGATGGAGAAGCCGCTGCCGTAGTACTGCGACCACGACTTGGTGTTCGCGATGCCGCCCAGCAGAGGGGAGCCCTTCTTATTTTGGGAAGGCTCCCCCGGTGGCGCCTCCTCGTCGGCGGCGGCGGCGGTGGCCGGACGAACGGAGACCGCAACCGCGGCGGAGGCGGAGGCGATGGCGGTGTGGATGGCGAAGTCGCGGCGCGAGGCGCCGCATGCCGAGGCGGGGCTCCGCCGCCGGGGCGGCGGGTTCTGGGGATACGGAGGCGAGGGGGCGAGGCGGAGGAGCACGGCGGGGGCCATTGCGCGGCGAGGCGGCGGCGCCACTGCCGAGCGGACGGCGCGGAAGCCGCGGCGGGAGAGGCTGGAAGTTCGCCGTGGTGAGAGGAACG] [-] EMBL AK060678 [ACTCTTGTATTATCCTTTGGCTGCGTACACCCATTTGGGTGTAGAGGACATGTTTTATCTATCTATTATCTAAAAAAACACGACCAAAAAATAAGATGATATGATTCATCTATGCAGCTGCGGCCTGAAATTCTGAATAAATGCTTGGTATTCTGCTTTGCATCATAAAACAGACAAAGATACAGCAGCCGATCGCAACTTCACGCCATCATCGTCCCACTTTGTCTCTGGAGCAGTGGCACCGGCAATATATGTCTTTCCACTATTCACAGTAGCCATTACAGCAACATGTTCTTTGTCCACACCAAACTCATAAAAGTAATATGTCCTTATATCATCTTCATCCTTAACTTTAATTGTTCGAGCTGAGTATAATTTTGCGCCACCAGGTACAAATATCTTTGATGCCTCCTTTAAAGTGCCCAGGTCTGTTACATCTTTGGCCTCTAGGAATGTGATTTTGAGCTGATTCGATGGCTTAATTACCACGCTTACAAGTTCAGACCTGTCCGGAGACGCGAAGCGAGCAGCGTATGTCCTGGGCTTCGCCTTGTCGCCGTAGTAGGTCACCCCGACGTTGAACTCCTCGGGCTCCAAGATGTCGTCGAAGGAAGGGGGAACGCGGATGGAGAAGCCGCTGCCGTAGTACTGCGACCACGACTTGGTGTTCGCGATGCCGCCCAGCAGAGGGGAGCCCTTCTTATTTTGGGAAGGCTCCCCCGGTGGCGCCTCCTCGTCGGCGGCGGCGGCGGTGGCCGGACGAACGGAGACCGCAACCGCGGCGGAGGCGGAGGCGATGGCGGTGTGGATGGCGAAGTCGCGGCGCGAGGCGCCGCATGCCGAGGCGGGGCTCCGCCGCCGGGGCGGCGGGTTCTGGGGATACGGAGGCGAGGGGGCGAGGCGGAGGAGCACGGCGGGGGCCATTGCGCGGCGAGGCGGCGGCGCCACTGCCGAGCGGACGGCGCGGAAGCCGCGGCGGGAGAGGCTGGAAGTTCGCCGTGGTGAGAGGAACG] consensusID : consensus_7555#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 786 fasta sequence [ATGCAGCTGCGGCCTGAAATTCTGAATAAATGCTTGGTATTCTGCTTTGCATCATAAAACAGACAAAGATACAGCAGCCGATCGCAACTTCACGCCATCATCGTCCCACTTTGTCTCTGGAGCAGTGGCACCGGCAATATATGTCTTTCCACTATTCACAGTAGCCATTACAGCAACATGTTCTTTGTCCACACCAAACTCATAAAAGTAATATGTCCTTATATCATCTTCATCCTTAACTTTAATTGTTCGAGCTGAGTATAATTTTGCGCCACCAGGTACAAATATCTTTGATGCCTCCTTTAAAGTGCCCAGGTCTGTTATATCTTTGGCCTACAAACCAATGTTTGTGTCAAAACATAAATTTTTTGGCTGATTGTGTGCAACATAAAATAATTCAAAATAAAAAACATGTCTTTGGGCCTTGATTACAGAGAATTGTTGATATAAAGAAACATTATGAACACTCCTGCACCTACTAGTGCAGTACCAGTTTCTACTAGTCAGTTGGAGCAAAAAAAGTAATGTTTGTCGCCTCTCTGTGAATCAATGCTACTATTGTTCATTATAAATATAATTAATTGGGACTTGACATGTGTTATCAATACTATATTTATTTCTATATAATTCTTATTATTGGTTAGGGGTGTTTATCAAAGGATGGTAAATTATCAACATATAAAGCACCATCAAACTTGTCATCATTTCGTTTTCGTTAATGAAAACAGGAGGATCCTGCCTCTCTTTATCCAAAAAATAAAATAAAATTAAAGTGCCATCAATCAT] [+] EMBL CB679743 [ATGCAGCTGCGGCCTGAAATTCTGAATAAATGCTTGGTATTCTGCTTTGCATCATAAAACAGACAAAGATACAGCAGCCGATCGCAACTTCACGCCATCATCGTCCCACTTTGTCTCTGGAGCAGTGGCACCGGCAATATATGTCTTTCCACTATTCACAGTAGCCATTACAGCAACATGTTCTTTGTCCACACCAAACTCATAAAAGTAATATGTCCTTATATCATCTTCATCCTTAACTTTAATTGTTCGAGCTGAGTATAATTTTGCGCCACCAGGTACAAATATCTTTGATGCCTCCTTTAAAGTGCCCAGGTCTGTTATATCTTTGGCCTACAAACCAATGTTTGTGTCAAAACATAAATTTTTTGGCTGATTGTGTGCAACATAAAATAATTCAAAATAAAAAACATGTCTTTGGGCCTTGATTACAGAGAATTGTTGATATAAAGAAACATTATGAACACTCCTGCACCTACTAGTGCAGTACCAGTTTCTACTAGTCAGTTGGAGCAAAAAAAGTAATGTTTGTCGCCTCTCTGTGAATCAATGCTACTATTGTTCATTATAAATATAATTAATTGGGACTTGACATGTGTTATCAATACTATATTTATTTCTATATAATTCTTATTATTGGTTAGGGGTGTTTATCAAAGGATGGTAAATTATCAACATATAAAGCACCATCAAACTTGTCATCATTTCGTTTTCGTTAATGAAAACAGGAGGATCCTGCCTCTCTTTATCCAAAAAATAAAATAAAATTAAAGTGCCATCAATCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7555#1 ACTCTTGTATTATCCTTTGGCTGCGTACACCCATTTGGGTGTAGAGGACATGTTTTATCT 60 consensus_7555#2 ------------------------------------------------------------ consensus_7555#0 ------------------------------------------------------------ consensus_7555#1 ATCTATTATCTAAAAAAACACGACCAAAAAATAAGATGATATGATTCATCTATGCAGCTG 120 consensus_7555#2 ---------------------------------------------------ATGCAGCTG 9 consensus_7555#0 ---------------------------------------------------ATGCAGCTG 9 ********* consensus_7555#1 CGGCCTGAAATTCTGAATAAATGCTTGGTATTCTGCTTTGCATCATAAAACAGACAAAGA 180 consensus_7555#2 CGGCCTGAAATTCTGAATAAATGCTTGGTATTCTGCTTTGCATCATAAAACAGACAAAGA 69 consensus_7555#0 CGGGCTGAAATTCTGAATAAATGCTTGGGATTCTGCTTTGCATCATAAAACAGACAAAGA 69 *** ************************ ******************************* consensus_7555#1 TACAGCAGCCGATCGCAACTTCACGCCATCATCGTCCCACTTTGTCTCTGGAGCAGTGGC 240 consensus_7555#2 TACAGCAGCCGATCGCAACTTCACGCCATCATCGTCCCACTTTGTCTCTGGAGCAGTGGC 129 consensus_7555#0 TACAGCAGCCGATCGCAACTTCACGCCATCATCGTCCCACTTTGTCTCTGGAGCAGTGGC 129 ************************************************************ consensus_7555#1 ACCGGCAATATATGTCTTTCCACTATTCACAGTA-GCCATTACAGCAACATGTTCTTTGT 299 consensus_7555#2 ACCGGCAATATATGTCTTTCCACTATTCACAGTA-GCCATTACAGCAACATGTTCTTTGT 188 consensus_7555#0 ACCGGCAATATATGGCTGGCCACACAACACCACATGGCAATTCAA-ATTAAATACTGGGA 188 ************** ** **** *** * * ** * ** * * * ** * consensus_7555#1 CC--------ACACCAAACTCATAAAAGTAATATGTCCTTATATCATCTTCATCCTTAAC 351 consensus_7555#2 CC--------ACACCAAACTCATAAAAGTAATATGTCCTTATATCATCTTCATCCTTAAC 240 consensus_7555#0 CCGAAATAGGATGCCAAAGTCCAGCAATTAAAAAGAAAATGAATCGATAATGTCATTAAA 248 ** * ***** ** ** *** * * * *** ** **** consensus_7555#1 TTTAATTGTTCGAGCT---GAGTATAA--TTTTGCGCCACCAG-GTACAAATATCTTTGA 405 consensus_7555#2 TTTAATTGTTCGAGCT---GAGTATAA--TTTTGCGCCACCAG-GTACAAATATCTTTGA 294 consensus_7555#0 TCTCTAAGATAAAGCTACAGATTACAAGCTTTCGGGACATCTGTATATTTGGTCCATTGG 308 * * * * **** ** ** ** *** * * ** * * ** * *** consensus_7555#1 TGCCTCCTTTAAAGTGCCCAG------GTCTGTTACATCTTTGGCCTCTAGGAATGTGAT 459 consensus_7555#2 TGCCTCCTTTAAAGTGCCCAG------GTCTGTTATATCTTTGGCCTACAAACCAATGTT 348 consensus_7555#0 TGTTCCCAGAACAGAAACAAACATGAAGACAGGAAAACATTTTCCCAGAACAGAACTGCC 368 ** ** * ** * * * * * * * *** ** * ** consensus_7555#1 TTTGAGCTGATTCGATGGCTTAATTACCACGCTTACAAGTTCAGACCTGTCCGGAGACGC 519 consensus_7555#2 TGTG-------TCAAAACATAAATTTTTTGGCTGATTGTGTGCAACATAA--AATAATTC 399 consensus_7555#0 CACA---------AAAACATAAAGGAAATGAGTGAATACCTTTCCACTATTCACAGGAGC 419 * * ** * * * * * consensus_7555#1 GAAGCGAGCAGCGTATGTCCTGGGCTTCGCCTTGTCGCCGTAGTAGGTCACCCCGACGTT 579 consensus_7555#2 AAAATAAAAAACATGTCTT-TGGGCCTTG----ATTACAGAGAATTGTTGATATAAAGAA 454 consensus_7555#0 CATTACAGCAACATGTTCTTTGTCCACACCAAACTCATAAAAGTAATATGTCCTGCAGAA 479 * * * * * * ** * * * consensus_7555#1 GAACTCCTCGGGCTCCAAGATGTCGTCGAAGGAAGGGGGAACGCGGATGGAGAAGCCGCT 639 consensus_7555#2 ACATTATGAACACTCCTGCACCTACT-------------AGTGCAGTACCAGTTTCTACT 501 consensus_7555#0 CCAATCTCTCATGACCAAAATCAAAATACAAGAAC----AATTCTGTCCAAATTGGGAC- 534 * * ** * * * * * * consensus_7555#1 GCCGTAGTACTGCGACCACGACTTGGTGTTCGCGATGCCGCCCAGCAGAGGGGAGCCCTT 699 consensus_7555#2 AGTCAGTTGGAGCAA--AAAAAGTAATGTTTGT--CGCCTCTCTGTGAATCAATGCTACT 557 consensus_7555#0 -ACTTATTGATGAGG----GATAAGATTTTTTTTTTGCCTCAAAATAAATAGAAAAGGGC 589 * * * * ** *** * * consensus_7555#1 CTTATTTTGGGAAGGCTCCCCCGGTGGCGCCTCCTCGTCGGCGGCGGCGGCGGTGGCCGG 759 consensus_7555#2 ATTGTTCATTATAAATATAATTAATTGGGACTTGACATGTGTTATCAATACTATATTTAT 617 consensus_7555#0 ATATAGTACCTTATATCATCTTCAT----CCTTAACTTTAATTGTTCGAGCTGAGTATAA 645 * * * ** * * * consensus_7555#1 ACGAACGGAGACCGCAACCGCGGC-GGAGGCGGAGGCGATGGCGGTGTGGATGGCGAAGT 818 consensus_7555#2 TTCTATATAATTCTTATTATTGGTTAGGGGTGTTTATCAAAGGATGGTAAATTATCAACA 677 consensus_7555#0 TTTTGCGCCACCTATGAAATGAGACAAAAGAATTTACAAACAAATTGGAAGAGCTAAGTC 705 * * * * * consensus_7555#1 CGCGGCGCGAGGCGCCGCATGCCGAGGCGGGGCT-C-CGCCGCCGGGG--CGGCGGGTTC 874 consensus_7555#2 TATAAAGCACCATCAAACTTGTCATCATTTCGTT-TTCGTTAATGAAAACAGGAGGATCC 736 consensus_7555#0 AGATATTTCCAAATGAGTACATTATGCTAGCACTACATGCTAACAGAA-TATTTTTGCTT 764 * * consensus_7555#1 TGGGGATACGGAGGCGAGGGGGCGAGGCGGAGGAGCACGGCGGGGGCCATTGCGCGGCGA 934 consensus_7555#2 TGCCTCTCTTTATCCAAAAAATAAAATAAAATTAAAGTGCCATCAATCAT---------- 786 consensus_7555#0 CATGTTTCCTCATATAATTTTTTGAAGTGATGGAAACAAAAAATGGATACAAGTTTATAT 824 * * * * * * consensus_7555#1 GGCGGCGGCGCCACTGCCGAGCGGACGGCGCGGAAGCCGCGGCGGGAGAGGCTGGAAGTT 994 consensus_7555#2 ------------------------------------------------------------ consensus_7555#0 TTCTTTGAATATTTTAACCAAGCATCAATATTGATCATACAAAGTTTTACGAAGACAACA 884 consensus_7555#1 CGCCGTGGTGAGAGGAACG----------------------------------------- 1013 consensus_7555#2 ------------------------------------------------------------ consensus_7555#0 GTAGATAACGACAAAGTTGTACAATGTGAAAGAAACAGTTCAAAATAGAATGTAGTAAGC 944 consensus_7555#1 ------------------------------------------------------------ consensus_7555#2 ------------------------------------------------------------ consensus_7555#0 ATGTGAGTACATTGTGCAACTCATTAAGAAAGCAGTTAATAGTGCACTTCCTTGCTGGAC 1004 consensus_7555#1 ------------------------------------------------------------ consensus_7555#2 ------------------------------------------------------------ consensus_7555#0 ATTTATTTTAAAAATGATGCAAAATTAACCAACATCATAAGAACATTGTTAAGATAAGAT 1064 consensus_7555#1 ------------------------------------------------------------ consensus_7555#2 ------------------------------------------------------------ consensus_7555#0 GCCCCTTCAATTTGTAAACATGATGTTTTAGATGTTAGGTCATTCAGGTGAAACATCATA 1124 consensus_7555#1 ------------------------------------------------------------ consensus_7555#2 ------------------------------------------------------------ consensus_7555#0 TATACAGCAGCGCCCACACAAGAAGCTAGATCAAGAGTTAGCAATTTCCTTTGATAAGTG 1184 consensus_7555#1 ------------------------------------------------------------ consensus_7555#2 ------------------------------------------------------------ consensus_7555#0 AAAACTGTGAATATGCCGTGTCCTTATTCATCTTAGAAACTTATTTTAAAAGCAAAGTAC 1244 consensus_7555#1 ---------------------------------------------------------- consensus_7555#2 ---------------------------------------------------------- consensus_7555#0 ATCTCTGAAGTCTAAGATAACAGTAATCACCAGGTACAAATATCTTTGATGCCTCCTT 1302 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||