These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7717#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1166 fasta sequence [ATGATCGGTTTAACGGAAGCTGTGGCAATTGGGAGGACGTTTGCTGCTCTGAAGGACTATCAATTAGATGGAAACAAGGAGATGGTAGCACTTGGAACTATGAACATAGCAGGGTCAATGACATCTTGTTATATTGCAACAGGTTCTTTCTCTCGTTCCGCAGTCAATTTCATGGCTGGCTGCCAAACACCAGTGTCCAATATCATTATGTCAGCAGTTGTGCTCCTGACCTTGTTGGTCATCACACCACTCTTCAAGTACACACCAAATGCGATCCTCGGGTCGATAATCATTTCTGCGGTGATCGGCCTTGTGGACTACGAAGCAGTAATTCTCATTTGGAAAGTTGACAAAATGGATTTCATTTCTTGCATGGGAGCATTCTTTGGTGTGGTCTTCGCATCTGTTGAGATAGGTCTTTTAATAGCTGTATCGATTTCATTTGCTAAAATTCTTCTTCAAGTAACAAGGCCAAGGACTGTACTTCTGGGAAACCTTCCAGGCACCACAATATACAGGAACACTGATCAGTATCCAGAAGCAAGACATATTCCTGGGGTTGTAATAGTGAGGGTTGATTCTGCTATCTACTTCTCCAACTCAAACTATGTCCGGGAGAGAACTCTTAGGTGGTTGACGGAGGAAGAAGAGAAAGCCAAAGCAGAGGGACAGTCTAAAATCAATTTCTTGATCATAGAGATGTCCCCGGTCATAGATATCGATACAAGTGGCATCCATGCTCTAGAAGATCTATACAAGAATCTTAAGAAGAGAGACATTCAGCTCATCCTAGCAAATCCTGGATCCATCGTCATGGAAAAGCTCTTGTCATCCAAGCTCAACGAGCACATAGGGAGTAACAATATTTTCCTCACGGTTGCTGACGCTGTGCGTTTCTGCACAAGAAAGTCGATGCAAGAACCATGAAGAAAAATAGATGAGAGATAAAGAGAGAGATGATGAACAATATTATATAGCATATGCGTATCATCTACTTATGATATAGAGGAATAGATCCATAGTCAAATCAGCTGGTTCAGTGAAATACTGGTGATAGCATATACAATTGGAAATAGTTGTATGGTGAATAGGGTTGCTATAAAC-CAAAA-TGTCATGACAGACAAATGGAAGGAAACTGATAATAATAGGTTAAGGCAATCCTTCCT] [+] EMBL AK062031 [ATGATCGGTTTAACGGAAGCTGTGGCAATTGGGAGGACGTTTGCTGCTCTGAAGGACTATCAATTAGATGGAAACAAGGAGATGGTAGCACTTGGAACTATGAACATAGCAGGGTCAATGACATCTTGTTATATTGCAACAGGTTCTTTCTCTCGTTCCGCAGTCAATTTCATGGCTGGCTGCCAAACACCAGTGTCCAATATCATTATGTCAGCAGTTGTGCTCCTGACCTTGTTGGTCATCACACCACTCTTCAAGTACACACCAAATGCGATCCTCGGGTCGATAATCATTTCTGCGGTGATCGGCCTTGTGGACTACGAAGCAGTAATTCTCATTTGGAAAGTTGACAAAATGGATTTCATTTCTTGCATGGGAGCATTCTTTGGTGTGGTCTTCGCATCTGTTGAGATAGGTCTTTTAATAGCTGTATCGATTTCATTTGCTAAAATTCTTCTTCAAGTAACAAGGCCAAGGACTGTACTTCTGGGAAACCTTCCAGGCACCACAATATACAGGAACACTGATCAGTATCCAGAAGCAAGACATATTCCTGGGGTTGTAATAGTGAGGGTTGATTCTGCTATCTACTTCTCCAACTCAAACTATGTCCGGGAGAGAACTCTTAGGTGGTTGACGGAGGAAGAAGAGAAAGCCAAAGCAGAGGGACAGTCTAAAATCAATTTCTTGATCATAGAGATGTCCCCGGTCATAGATATCGATACAAGTGGCATCCATGCTCTAGAAGATCTATACAAGAATCTTAAGAAGAGAGACATTCAGCTCATCCTAGCAAATCCTGGATCCATCGTCATGGAAAAGCTCTTGTCATCCAAGCTCAACGAGCACATAGGGAGTAACAATATTTTCCTCACGGTTGCTGACGCTGTGCGTTTCTGCACAAGAAAGTCGATGCAAGAACCATGAAGAAAAATAGATGAGAGATAAAGAGAGAGATGATGAACAATATTATATAGCATATGCGTATCATCTACTTATGATATAGAGGAATAGATCCATAGTCAAATCAGCTGGTTCAGTGAAATACTGGTGATAGCATATACAATTGGAAATAGTTGTATGGTGAATAGGGTTGCTATAAAC CAAAA TGTCATGACAGACAAATGGAAGGAAACTGATAATAATAGGTTAAGGCAATCCTTCCT] [+] EMBL CF196279 [ AGATGGAAACAAGGAGATGGTAGCACTTGGAACTATGAACATAGCAGGGTCAATGACATCATGTTATATTGCGACAGGTTCTTTCTCTCGTTCCGCAGTCAATTTCATGGCTGGCTGCCAAACACCAGTGTCCAATATCATTATGTCAGCAGTTGTGCTCCTGACCTTGTTGGTCATCACACCACTCTTCAAGTACACACCAAATGCGATCCTCGGGTCGATAATCATTTCTGCGGTGATCGGCCTTGTGGACTACGAAGCAGTAATTCTCATTTGGAAAGTTGACAAAATGGATTTCATTGCTTGCATGGGAGCATTCTTTGGTGTGGTCTTCGCATCTGTTGAGATAGGTCTTTTAATAGCTGTATCGATTTCATTTGCTNNNATTCTTCTTCAAGTAACAAGGCCAAGGACTGTACTTCTGGGAAACCTTCCAGGCACCACAATATACAGNNNCACTGATCAGTATCCANNNGNNNNNNNTATTCNNNNNGTTGTANNNNNGNNNNNTGATTCTGCTATCTACTTnnnnn ] [-] EMBL CB669750 [ TTGACAAAATGGATTTCATTTCTTGCATGGGAGCATTCTTTGGTGTGGTCTTCGCATCTGTTGAGATAGGTCTTTTAATAGCTGTATCGATTTCATTTGCTAAAATTCTTCTTCAAGTAACAAGGCCAAGGACTGTACTTCTGGGAAACCTTCCAGGCACCACAATATACAGGAACACTGATCAGTATCCAGAAGCAAGACATATTCCTGGGGTTGTAATAGTGAGGGTTGATTCTGCTATCTACTTCTCCAACTCAAACTATGTCCGGGAGAGAACTCTTAGGTGGTTGACGGAGGAAGAAGAGAAAGCCAAAGCAGAGGGACAGTCTAAAATCAATTTCTTGATCATAGAGATGTCCCCGGTCATAGATATCGATACAAGTGGCATCCATGCTCTAGAAGATCTATACAAGAATCTTAAGAAGAGAGACATTCAGCTCATCCTAGCAAATCCTGGATCCATCGTCATGGAAAAGCTCTTGTCATCCAAGCTCAACGAGCACATAGGGAGTAACAATATTTTCCTCACGGTTGCTGACGCTGTGCGTTTCTGCACAAGAAAGTCGATGCAAGAACCATGAAGAAAAATAGATGAGAGATAAAGAGAGAGATGATGAACAATATTATATAGCATATGCGTATCATCTACTTATGATATAGAGGAATAGATCCATAGTCAAATCAGCTGGTTCAGTGAAATACTGGTGATAGCATATACAATTGGAAATAGTTGTATGGTGAATAGGGTTGCTATAAACTCAAAATTGTCATGACAGAGAAATGGAAGGAAACTGATAATAATAGGTT ] [+] EMBL AU161856 [ TATCGATACAAGTGGCATCCATGCTCTAGAAGATCTATACAAGAATCTTAAGAAGAGAGACATTCAGCTCATCCTAGCAAATCCTGGATCCATCGTCATGGAAAAGCTCTTGTCATCCAAGCTCAACGAGCACATAGGGAGTAACAATATTTTCCTCACGGTTGCTGACGCTGTGCGTTTCTGCACAAGAAAGTCGATGCAAGAACCATGAAGAAAAATAGATGAGAGATAAAGAGAGAGATGATGAACAATATTATATAGCATATGCGTATCATCTACTTATGATATAGAGGAATAGATCCATAGTCAAATCAGCTGGTTCAGTGAAATACTGGTGATAGCATATACAATTGGAAATAGTTGTATGGTGAAaaaaaaaaa ] consensusID : consensus_7717#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 502 fasta sequence [GGACAGTCTAAAATCAATTTCTNGATCATAGAGATGTCCCCGGTCATAGATATCGATACAAGTGGCATCCATGCTCTAGAAGATCTATACCAAGAATCTTAAGAAGAGAGACATTCAGCTCATCCTAGCAAATCCTGGATCCATCGTCATGGAAAAGCTCTTGTCATCCAAGCTCAACGAGCACATAGGGAGTAACAATATTTTCCTCACGGTTGCTGACGCTGTGCGTTTCTGCACAAGAAAGTCGATGCAAGAACCATGAAGAAAAATAGATGAGAGACAAAGAGAGAGATGATGAACAATATTATATAGCATATGCGTATCATCTACTTATGATATAGAGGAATAGATCCATAGGCAAATCAGCTGGTTCAGTGAAATACTGGTGATAGCATATACAATTGGAAATAGTTGTATGGTGAATAGGGTTGCTATAAACCCAAATGTCATGACAGACAAATGGAAGGAAACTGATAATAATAGGTTAAGGCCAAAAAAAAAA] [+] EMBL BQ906864 [GGACAGTCTAAAATCAATTTCTNGATCATAGAGATGTCCCCGGTCATAGATATCGATACAAGTGGCATCCATGCTCTAGAAGATCTATACCAAGAATCTTAAGAAGAGAGACATTCAGCTCATCCTAGCAAATCCTGGATCCATCGTCATGGAAAAGCTCTTGTCATCCAAGCTCAACGAGCACATAGGGAGTAACAATATTTTCCTCACGGTTGCTGACGCTGTGCGTTTCTGCACAAGAAAGTCGATGCAAGAACCATGAAGAAAAATAGATGAGAGACAAAGAGAGAGATGATGAACAATATTATATAGCATATGCGTATCATCTACTTATGATATAGAGGAATAGATCCATAGGCAAATCAGCTGGTTCAGTGAAATACTGGTGATAGCATATACAATTGGAAATAGTTGTATGGTGAATAGGGTTGCTATAAACCCAAATGTCATGACAGACAAATGGAAGGAAACTGATAATAATAGGTTAAGGCCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7717#0 ATGATCGGTTTAACGGAAGCTGTGGCAATTGGGAGGACGTTTGCTGCTCTGAAGGACTAT 60 consensus_7717#1 ------------------------------------------------------------ consensus_7717#0 CAATTAGATGGAAACAAGGAGATGGTAGCACTTGGAACTATGAACATAGCAGGGTCAATG 120 consensus_7717#1 ------------------------------------------------------------ consensus_7717#0 ACATCTTGTTATATTGCAACAGGTTCTTTCTCTCGTTCCGCAGTCAATTTCATGGCTGGC 180 consensus_7717#1 ------------------------------------------------------------ consensus_7717#0 TGCCAAACACCAGTGTCCAATATCATTATGTCAGCAGTTGTGCTCCTGACCTTGTTGGTC 240 consensus_7717#1 ------------------------------------------------------------ consensus_7717#0 ATCACACCACTCTTCAAGTACACACCAAATGCGATCCTCGGGTCGATAATCATTTCTGCG 300 consensus_7717#1 ------------------------------------------------------------ consensus_7717#0 GTGATCGGCCTTGTGGACTACGAAGCAGTAATTCTCATTTGGAAAGTTGACAAAATGGAT 360 consensus_7717#1 ------------------------------------------------------------ consensus_7717#0 TTCATTTCTTGCATGGGAGCATTCTTTGGTGTGGTCTTCGCATCTGTTGAGATAGGTCTT 420 consensus_7717#1 ------------------------------------------------------------ consensus_7717#0 TTAATAGCTGTATCGATTTCATTTGCTAAAATTCTTCTTCAAGTAACAAGGCCAAGGACT 480 consensus_7717#1 ------------------------------------------------------------ consensus_7717#0 GTACTTCTGGGAAACCTTCCAGGCACCACAATATACAGGAACACTGATCAGTATCCAGAA 540 consensus_7717#1 ------------------------------------------------------------ consensus_7717#0 GCAAGACATATTCCTGGGGTTGTAATAGTGAGGGTTGATTCTGCTATCTACTTCTCCAAC 600 consensus_7717#1 ------------------------------------------------------------ consensus_7717#0 TCAAACTATGTCCGGGAGAGAACTCTTAGGTGGTTGACGGAGGAAGAAGAGAAAGCCAAA 660 consensus_7717#1 ------------------------------------------------------------ consensus_7717#0 GCAGAGGGACAGTCTAAAATCAATTTCTTGATCATAGAGATGTCCCCGGTCATAGATATC 720 consensus_7717#1 ------GGACAGTCTAAAATCAATTTCTNGATCATAGAGATGTCCCCGGTCATAGATATC 54 ********************** ******************************* consensus_7717#0 GATACAAGTGGCATCCATGCTCTAGAAGATCTATAC-AAGAATCTTAAGAAGAGAGACAT 779 consensus_7717#1 GATACAAGTGGCATCCATGCTCTAGAAGATCTATACCAAGAATCTTAAGAAGAGAGACAT 114 ************************************ *********************** consensus_7717#0 TCAGCTCATCCTAGCAAATCCTGGATCCATCGTCATGGAAAAGCTCTTGTCATCCAAGCT 839 consensus_7717#1 TCAGCTCATCCTAGCAAATCCTGGATCCATCGTCATGGAAAAGCTCTTGTCATCCAAGCT 174 ************************************************************ consensus_7717#0 CAACGAGCACATAGGGAGTAACAATATTTTCCTCACGGTTGCTGACGCTGTGCGTTTCTG 899 consensus_7717#1 CAACGAGCACATAGGGAGTAACAATATTTTCCTCACGGTTGCTGACGCTGTGCGTTTCTG 234 ************************************************************ consensus_7717#0 CACAAGAAAGTCGATGCAAGAACCATGAAGAAAAATAGATGAGAGATAAAGAGAGAGATG 959 consensus_7717#1 CACAAGAAAGTCGATGCAAGAACCATGAAGAAAAATAGATGAGAGACAAAGAGAGAGATG 294 ********************************************** ************* consensus_7717#0 ATGAACAATATTATATAGCATATGCGTATCATCTACTTATGATATAGAGGAATAGATCCA 1019 consensus_7717#1 ATGAACAATATTATATAGCATATGCGTATCATCTACTTATGATATAGAGGAATAGATCCA 354 ************************************************************ consensus_7717#0 TAGTCAAATCAGCTGGTTCAGTGAAATACTGGTGATAGCATATACAATTGGAAATAGTTG 1079 consensus_7717#1 TAGGCAAATCAGCTGGTTCAGTGAAATACTGGTGATAGCATATACAATTGGAAATAGTTG 414 *** ******************************************************** consensus_7717#0 TATGGTGAATAGGGTTGCTATAAACCAAAATGTCATGACAGACAAATGGAAGGAAACTGA 1139 consensus_7717#1 TATGGTGAATAGGGTTGCTATAAACCCAAATGTCATGACAGACAAATGGAAGGAAACTGA 474 ************************** ********************************* consensus_7717#0 TAATAATAGGTTAAGGCAATCCTTCCT- 1166 consensus_7717#1 TAATAATAGGTTAAGGCCAAAAAAAAAA 502 ***************** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||