These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7822#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 804 fasta sequence [TTTTGTCAACTATCATACATGAATGCATTATTCACAACTTCGCGCTTTCATATACTCTCTGAACTATACAGGGATTGCCTATCATTTGCAAATTTAAATGAACAGCTACTGTGATGGGAGGGCCAAAAAAATAAAGATGAATATAATTAGCTTGTCATTTGACTGCACCTACTGAATTTCTTCCTTTGGTTCTGAACTGATCCCTGTTCTTCCTTCTCACCTCCATTGGATGCCCAAGCAAATATGGCTTGAAAGCGCCAATGAAAACAGCGGAAGGGGGCATACTGAGGCCTGGCTTTGCCTTGTGTGTGTTCTTCTTTGGACTATTCAGGTAAGACTTCATGTGGCCAAATATTAGGCTAGGCATCTTCTTTAGCTCCACAACTGATGATGTGAAGAACTGTTCCGTGGAAACATCAGCCGATGAATCGAGACTAAACCCGATTGACGCATCTAGGTGAGGCGGAGGAAACCTCTCGAGTTTTGTTGTGCTTGTGCTTGTCACCAATCTTGGGATATTTGGTTTAGCTTGAGGCTTATTATTGACATCTGGAGTAAATACTCTGCGCCCAGGATTTTGTGACATGGGCTTTCTTGCTGTGGTCTGACGTTCTACTGAACCATTAGCCCTCAGTTTCCTTTTATGCTTCTCATACTTCAACTTCACATCTATTTCTTTACATGGTGGATACCGGGGAAGGCTTGATGGTTCACAGGCATATGGTTCTGTCCTGAAGAACTCACTGTTGAGAGCATCAGTTGCTGTGCCTCTCATGTCAGGATCAATAGACAGGAGAGTCTCAA] [+] EMBL CB673149 [TTTTGTCAACTATCATACATGAATGCATTATTCACAACTTCGCGCTTTCATATACTCTCTGAACTATACAGGGATTGCCTATCATTTGCAAATTTAAATGAACAGCTACTGTGATGGGAGGGCCAAAAAAATAAAGATGAATATAATTAGCTTGTCATTTGACTGCACCTACTGAATTTCTTCCTTTGGTTCTGAACTGATCCCTGTTCTTCCTTCTCACCTCCATTGGATGCCCAAGCAAATATGGCTTGAAAGCGCCAATGAAAACAGCGGAAGGGGGCATACTGAGGCCTGGCTTTGCCTTGGGTGGGTTCTTCTTTGGACTATTCAGGAAAAACTTCATGGGGCCAAATATTAGGCTAGGCATCTTCTTTAGCTCCACAACTGATGATGTGAAAAACTGTTCCGGGGAAACATCAGCCGATGAATCGAGACTAAACCCGATTGACCCATCTAGGTGAGGCGGAGGAAACCTCTCGAGTTTTGTTGGGCTTGTGCTTGTCACCAATCTTGGGATATTTGGTTTAGCTTGAGGCTTATTATTGACATCTGGAGTAAATACTCTGCGCCCAGAATTTTGTGACATGGGCTTTCTTGCTGTGGTCTGACGTTCTACTGAACCATTAACCCTCAGTTTCCTTTTATGCTTCTCATACTTCAACTTCACATCTA ] [+] EMBL CB620720 [ TCGC CTTTCATATACTCTCTGAACTATACAGGTATTGCCTATCATTTGCAGATTTAAATGAACAGCTACTGTGATGTGAGGGCCAAAAAAACAAAGATGAATATAATTAGCTTGTCATTTGACTGCACCTACTGAATTTCTTCCTTTGGTTCTGAACTGATCCCTGTTCTTCCTTCTCACCTCCATTGGATGCCCAAGCGAATATGGCTTGAAAGCGCCAATGAGAACAGCGGAAGGTGGCATACTGAGGCCTGGCTTTGCCTTGTGTGTGTTCTTCTTTGGACTATTCAGGTAAGACTTCATGTGGCCAAATATTAGGCTAGGCATCTTCTTTAGCTCCACAACTGATGATGTGAAGAACTGTTCCGTGGAAACATCAGCCGATGAATCGAGACTAAACCCGATTGACGCATCTAGGTGAGGCGGAGGAAACCTCTCGAGTTTTGTTGTGCTTGTGCTTGTCACCAATCTTGGGATATTTGGTTTAGCTTGAGGCTTATTATTGACATCTGGAGTAAATACTCTGCGCCCAGGATTTTGTGACATGGGCTTTCTTGCTGTGGTCTGACGTTCTACTGAACCATTAGCCCTCAGTTTCCTTTTATGCTTCTCATACTTCAACTTCACATCTATTTCTTTACATGGTGGATACCGGGGAAGGCTTGATGGTTCACAGGCATATGGTTCTGTCCTGAAGAACTCACTGTTGAGAGCATCAGTTGCTGTGCCTCTCATGTCAGGA ] [-] EMBL CF323433 [ TGAGGCCTGGCTTTGCCTTGTGTGTGTTCTTCTTTGGACTATTCAGGTAAGACTTCATGTGGCCAAATATTAGGCTAGGCATCTTCTTTAGCTCCACAACTGATGATGTGAAGAACTGTTCCGTGGAAACATCAGCCGATGAATCGAGACTAAACCCGATTGACGCATCTAGGTGAGGCGGAGGAAACCTCTCGAGTTTTGTTGTGCTTGTGCTTGTCACCAATCTTGGGATATTTGGTTTAGCTTGAGGCTTATTATTGACATCTGGAGTAAATACTCTGCGCCCAGGATTTTGTGACATGGGCTTTCTTGCTGTGGTCTGACGTTCTACTGAACCATTAGCCCTCAGTTTCCTTTTATGCTTCTCATACTTCAACTTCACATCTATTTCTTTACATGGTGGATACCGGGGAAGGCTTGATGGTTCACAGGCATATGGTTCTGTCCTGAAGAACTCACTGTTGAGAGCATCAGTTGCTGTGCCTCTCATGTCAGGATCAATAGACAGGAGAGTCTCAA] consensusID : consensus_7822#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence [TGACTAGCCAAGTGATCACACTTTGGTATCGTCCACCTGAACTCTTGTTAGGTGCTACTCACTATGGCGTCGGTGTTGATCTCTGGAGTGTGGGTTGCATACTAGCAGAATTGCTTCTCGGCGAGCCTATATTCCCAGGGAGAACAGAGGTGGAGCAATTGCACAAAATCTTCAAGTTATGCGGCTCTCCGTCAGACGATTACTGGGAGAAAATGAAGTTCCCACATGCTTCATTCAGGACATATGAGCGATGCATCGCGGAGAAATTTAAAGATGTGGCACCATCTGCACTATCACTTCTTGAGACTCTCCTGTCTATTGATCCTGACATGAGAGGCACAGCAACTGATGCTCTCAACAGTGAGGTTAATACCGCCCTTCACATTCTAGGCAACACTCTCACAGGCAAC] [+] EMBL CB673148 [TGACTAGCCAAGTGATCACACTTTGGTATCGTCCACCTGAACTCTTGTTAGGTGCTACTCACTATGGCGTCGGTGTTGATCTCTGGAGTGTGGGTTGCATACTAGCAGAATTGCTTCTCGGCGAGCCTATATTCCCAGGGAGAACAGAGGTGGAGCAATTGCACAAAATCTTCAAGTTATGCGGCTCTCCGTCAGACGATTACTGGGAGAAAATGAAGTTCCCACATGCTTCATTCAGGACATATGAGCGATGCATCGCGGAGAAATTTAAAGATGTGGCACCATCTGCACTATCACTTCTTGAGACTCTCCTGTCTATTGATCCTGACATGAGAGGCACAGCAACTGATGCTCTCAACAGTGAGGTTAATACCGCCCTTCACATTCTAGGCAACACTCTCACAGGCAAC] consensusID : consensus_7822#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 318 fasta sequence [TTTTTTTTTTTTTTGAGCTGAGAATTTTTTTCTGTGTTTCTGATTTCATTCTGGATGATTTGAATGTATTCAGGGTCTACCACGTTCTTGATTTTTTTTTACTGAACTGCCTATGATTTCCAGTGAAATTTTGTGAACTATCATACATGAATGCATTATTCACAACTCGCCTTTCATATACTCTCTGAACTATACAGGTATTGCCTATCATTTGCAGATTTAAATGAACAGCTACTGTGATGTGAGGGCCAAAAAAATAAAGATGAATATAATTAGCTTGTCATTTGACTGCACCTACTGAACCCACGCGTNCCNGTC] [-] EMBL AU056525 [TTTTTTTTTTTTTTGAGCTGAGAATTTTTTTCTGTGTTTCTGATTTCATTCTGGATGATTTGAATGTATTCAGGGTCTACCACGTTCTTGATTTTTTTTTACTGAACTGCCTATGATTTCCAGTGAAATTTTGTGAACTATCATACATGAATGCATTATTCACAACTCGCCTTTCATATACTCTCTGAACTATACAGGTATTGCCTATCATTTGCAGATTTAAATGAACAGCTACTGTGATGTGAGGGCCAAAAAAATAAAGATGAATATAATTAGCTTGTCATTTGACTGCACCTACTGAACCCACGCGTNCCNGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7822#0 ------------------------------------------------------------ consensus_7822#2 TTTTTTTTTTTTTTGAGCTGAGAATTTTTTTCTGTGTTTCTGATTTCATTCTGGATGATT 60 consensus_7822#1 ------------------------------------------------------------ consensus_7822#0 ------------------------------------------------------------ consensus_7822#2 TGAATGTATTCAGGGTCTACCACGTTCTTGATTTTTTTTTACTGAACTGCCTATGATTTC 120 consensus_7822#1 ------------------------------------------------------------ consensus_7822#0 --------TTTTGTCAACT-ATCATACATGAATGCATTATTCACAACTTCGCGCTT-TCA 50 consensus_7822#2 CAGTGAAATTTTGTGAACT-ATCATACATGAATGCATTATTCACAACT-CGC-CTT-TCA 176 consensus_7822#1 ------TGACTAGCCAAGTGATCACACTTTGGT--ATCGTCCAC--CTGAACTCTTGTTA 50 * * ** * **** ** * * ** * *** ** * *** * * consensus_7822#0 TATACT-CTCTGAACTATACAGGGATTG-CCTATCATTTGCAAATT-TAAATGAACAGCT 107 consensus_7822#2 TATACT-CTCTGAACTATACAGGTATTG-CCTATCATTTGCAGATT-TAAATGAACAGCT 233 consensus_7822#1 GGTGCTACTCACTATGGCGTCGGTGTTGATCTCTGGAGTGTGGGTTGCATACTAGCAGAA 110 * ** *** * ** *** ** * ** ** * * * *** consensus_7822#0 ACTGTGATGGGAGGGCCAAAAAAATAAAGATGAATATAATTAGCTTGTCATTTGACTGCA 167 consensus_7822#2 ACTGTGATGTGAGGGCCAAAAAAATAAAGATGAATATAATTAGCTTGTCATTTGACTGCA 293 consensus_7822#1 TTGCTTCTCGGCGAGCCTATATTCCCAGGGAGAACAGAGGTGGA--GCAATTGCACAAAA 168 * * * * *** * * * * *** * * * * * *** ** * consensus_7822#0 CCTACTGAATTTCTTCCTTTGGTTCTGAACTGATCCCTGTTCTTCCTTCTCACCTCCATT 227 consensus_7822#2 CCTACTGAACCCACGCGTNCCNGTC----------------------------------- 318 consensus_7822#1 TCTTCAAGTTATGCGGCTCTCCGTCAGA--CGATTACTGGGAGAAAATGAAGTTCCCACA 226 ** * * ** consensus_7822#0 GGATGC-CCAAGCAAATATGGCTTGAAAGCGCCAATGAAAACAGCGGAAGGGGGCATACT 286 consensus_7822#2 ------------------------------------------------------------ consensus_7822#1 TGCTTCATTCAGGACATATGAGCGATGCATCGCGGAGAAATTTAAAGATGTGGCACCATC 286 consensus_7822#0 GAGGCCTGGCTTTGCCTTGTGTGTGTTCTTCTTTGGACTATTCAGGTAAGACTTCATGTG 346 consensus_7822#2 ------------------------------------------------------------ consensus_7822#1 TGCACTATCACTTCTTGAGACTCTCCTGTCTATTGATCCTGACATGAGAGGCACAG---- 342 consensus_7822#0 GCCAAATATTAGGCTAGGCATCTTCTTTAGCTCCACAACTGATGATGTGAAGAACTGTTC 406 consensus_7822#2 ------------------------------------------------------------ consensus_7822#1 --CAACTGATGCTCTCAACAGTGAGGTTAATACCGCCCTTCACATTCTAGGCAACACTCT 400 consensus_7822#0 CGTGGAAACATCAGCCGATGAATCGAGACTAAACCCGATTGACGCATCTAGGTGAGGCGG 466 consensus_7822#2 ------------------------------------------------------------ consensus_7822#1 CACAGGCAAC-------------------------------------------------- 410 consensus_7822#0 AGGAAACCTCTCGAGTTTTGTTGTGCTTGTGCTTGTCACCAATCTTGGGATATTTGGTTT 526 consensus_7822#2 ------------------------------------------------------------ consensus_7822#1 ------------------------------------------------------------ consensus_7822#0 AGCTTGAGGCTTATTATTGACATCTGGAGTAAATACTCTGCGCCCAGGATTTTGTGACAT 586 consensus_7822#2 ------------------------------------------------------------ consensus_7822#1 ------------------------------------------------------------ consensus_7822#0 GGGCTTTCTTGCTGTGGTCTGACGTTCTACTGAACCATTAGCCCTCAGTTTCCTTTTATG 646 consensus_7822#2 ------------------------------------------------------------ consensus_7822#1 ------------------------------------------------------------ consensus_7822#0 CTTCTCATACTTCAACTTCACATCTATTTCTTTACATGGTGGATACCGGGGAAGGCTTGA 706 consensus_7822#2 ------------------------------------------------------------ consensus_7822#1 ------------------------------------------------------------ consensus_7822#0 TGGTTCACAGGCATATGGTTCTGTCCTGAAGAACTCACTGTTGAGAGCATCAGTTGCTGT 766 consensus_7822#2 ------------------------------------------------------------ consensus_7822#1 ------------------------------------------------------------ consensus_7822#0 GCCTCTCATGTCAGGATCAATAGACAGGAGAGTCTCAA 804 consensus_7822#2 -------------------------------------- consensus_7822#1 -------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||