cluster # 7947

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Oryza sativa
cluster # 7947 cluster # 7947 Sequences # 5 consensus # 1
see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7947#0 length = 1586 sequences # 5
consensusID : consensus_7947#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1586
fasta sequence
                              [ACATCGGCAGATGTATCAGAACATCATTCCACAAAATTCCCTTATGGATGGGTTATTGGCAGCATGGGAGTTGCACTTGCTTTGATTGCTATTGCTCTCCTTGCACTTGTTCTGTGCAAGCTCTCCCAATACAATCCCCAAGCTCCAAATAACCAGGGAAAGAGCCCAGACCAGTCTATATCACACAAGTTTCAACNTCTTAAGAGTGGTAGTTTTTGTTATGGTTCTGGAAGATACTTATGTTGCCAATTTGGAAATGTG-AACAATCAAGAACGGATGGCAGTGATCATCATATGAATACCCCAAAAGGT-GTTGGAATGGACGTGTTTGATAGGGAGAAGCCCATTGTGTTTACCTATCAAGAAATACTTGCATCAACCGATTCATTTTCTGATGCAAATCTTCTGGGTCATGGTACATATGGCTCTGTTTATTATGGTGTTCTTCGAGACCAGGAGGTCGCTATAAAGAGAATGACAGCAACTAAAACTAAAGAGTTTATAGTGGAGATGAAAGTTCTTTGTAAGGTCCATCATGCCAGTCTGGTAGAGTTGATTGGCTATGCAGCAAGCAAGGATGAACTATACCTTATTTACGAGTACTCTCAAAAAGGTTCACTCAAGAATCACCTTCATGATCCTCAAAGCAAAGGTTACACATCATTGTCTTGGATCTACAGGGTCCAAATTGCTCTTGATGCGGCTAGAGGACTTGAATACATTCATGAGCATACAAAGGATCATTATGTTCACAGGGACATCAAATCGAGTAACATCTTGCTCGATGAATCCTTCAGAGCAAAGATTTCAGATTTTGGTCTTGCAAAACTGGTAGTGAAGTCAACTGATGCAGAGGCTTCTGTCACAAAAGTTGTGGGTACATTTGGTTACTTGGCCCCTGAATACTTGCGCGATGGCCTGGCAACTACGAAAAATGATGTTTATGCTTTTGGAGTAGTACTTTTTGAGTTAATATCTGGAAAGGAGGCAATTACAAGGACTGATGGATTGAACGAAGGATCAAACTCAGAAAGGCGTTCCTTGGCATCAGTTATGTTGAGTGCACTAAAGAATTGTCGTAACTCAATGTATATGGGGAGCCTGAAAGACTGCATTGACCCTAATCTAATGGACCTGTATCCACATGACTGTGTATACAAGATGGCCATGCTAGCGAAACAGTGCGTGGAGGAAGATCCTGTTCTTCGGCCAGACATGAAGCAGGCAGTAATCACG-TATCGCAAATACTGCTGTCGTCGATCGAGTGGGAAGCGACGCTAGCTGGGAACAGCCAAGTGTTCAGTGGTCTTGTGGCTGGGAGGTGATCCTGTAAGATTGGCCTGGTTGCTACGGTGCTATCCCATGCGCTCTTCGGTGATCTCCTTCCCTGCTCCACTAGAGGCGTTTTCCCCTGTAACCTTCTCCTGCATTTTGCTGGTTTCTTGCCCAGTTGAGCAGTTTTCTGCATCTTCTTTTCAAAGTATCTACCACAGTGCAATATATTTCTTGGTGGGTGATATGTAACCATGTATGTATACCAAATGTGCCTTGCAAGTTCTAATGCAATGATNNNNTNNCAAAAAAAAA]

[+] EMBL AU095174             [ACATCGGCAGATGTATCAGAACATCATTCCACAAAATTCCCTTATGGATGGGTTATTGGCAGCATGGGAGTTGCACTTGCTTTGATTGCTATTGCTCTCCTTGCACTTGTTCTGTGCAAGCTCTCCCAATACAATCCCCAAGCTCCAAATAACCAGGGAAAGAGCCCAGACCAGTCTATATCACACAAGTTTCAACNTCTTAAGAGTGGTAGTTTTTGTTATGGTTCTGGAAGATACTTATGTTGCCAATTTGGAAATGTG AACAATCAAGAACGGATGGCAGTGATCATCATATGAATACCCCAAAAGGTGGTTGGAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AK073720             [                                                   GTTATTGGCAGCATGGGAGTTGCACTTGCTTTGATTGCTATTGCTCTCCTTGCACTTGTTCTGTGCAAGCTCTCCCAATACAATCCCCAAGCTCCAAATAACCAGGGAAAGAGCCCAGACCAGTCTATATCACACAAGTTTCAACTTCTTAAGAGTGGTAGTTTTTGTTATGGTTCTGGAAGATACTTATGTTGCCAATTTGGAAATGTGAAACAATCAAGAACGGATGGCAGTGATCATCATATGAATACCCCAAAAGGT GTTGTAGTGGACGTGTTTGATAGGGAGAAGCCCATTGTGTTTACCTATCAAGAAATACTTGCATCAACCGATTCATTTTCTGATGCAAATCTTCTGGGTCATGGTACATATGGCTCTGTTTATTATGGTGTTCTTCGAGACCAGGAGGTCGCTATAAAGAGAATGACAGCAACTAAAACTAAAGAGTTTATAGTGGAGATGAAAGTTCTTTGTAAGGTCCATCATGCCAGTCTGGTAGAGTTGATTGGCTATGCAGCAAGCAAGGATGAACTATACCTTATTTACGAGTACTCTCAAAAAGGTTCACTCAAGAATCACCTTCATGATCCTCAAAGCAAAGGTTACACATCATTGTCTTGGATCTACAGGGTCCAAATTGCTCTTGATGCGGCTAGAGGACTTGAATACATTCATGAGCATACAAAGGATCATTATGTTCACAGGGACATCAAATCGAGTAACATCTTGCTCGATGAATCCTTCAGAGCAAAGATTTCAGATTTTGGTCTTGCAAAACTGGTAGTGAAGTCAACTGATGCAGAGGCTTCTGTCACAAAAGTTGTGGGTACATTTGGTTACTTGGCCCCTGAATACTTGCGCGATGGCCTGGCAACTACGAAAAATGATGTTTATGCTTTTGGAGTAGTACTTTTTGAGTTAATATCTGGAAAGGAGGCAATTACAAGGACTGATGGATTGAACGAAGGATCAAACTCAGAAAGGCGTTCCTTGGCATCAGTTATGTTGAGTGCACTAAAGAATTGTCGTAACTCAATGTATATGGGGAGCCTGAAAGACTGCATTGACCCTAATCTAATGGACCTGTATCCACATGACTGTGTATACAAGATGGCCATGCTAGCGAAACAGTGCGTGGAGGAAGATCCTGTTCTTCGGCCAGACATGAAGCAGGCAGTAATCGCGCTATCGCAAATACTGCTGTCGTCGATCGAGTGGGAAGCGACGCTAGCTGGGAACAGCCAAGTGTTCAGTGGTCTTGTGGCTGGGAGGTGATCCTGTAAGATTGGCCTGGTTGCTACGGTGCTATCCCATGCGCTCTTCGGTGATCTCCTTCCCTGCTCCACTAGAGGCGTTTTCCCCTGTAACCTTCTCCTGCATTTTGCTGGTTTCTTGCCCAGTTGAGCAGTTTTCTGCATCTTCTTTTCAAAGTATCTACCACAGTGCAATATATTTCTTGGTGGGTGATATGTAACCATGTATGTATACCAAATGTGCCTTGCAAGTTCTAATGCAATG                   ]
[+] EMBL AU065666             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GAGTACTCTCAAAAAGGTTCACTCAAGAATCACCTTCATGATCCTCAAAGCAAAGGTTACACATCATTGTCTTGGATCTACAGGGTCCAAATTGCTCTTGATGCGGCTAGAGGACTTGAATACATTCATGAGCATACAAAGGATCATTATGTTCACAGGGACATCAAATCGAGTAACATCTTGCTCGATGAATCCTTCAGAGCAAAGATTTCAGATTTTGGTCTTGCAAAACTGGTAGTGAAGTCAACTGATGCAGAGGCTTCTGTCACAAAAGTTGTGGGTACATTTGGTTACTTGGCCCCTGAATACTTGCGCGATGGCCTGGCAACTACGAAAAATGATGTTTATGCTTTTGGAGNAG ACTTTTTGAGTTAATATCTGG AAGGAGGCAATTACAAGGNCTGATGGATTGACCG ANGATC AACTCAG AAGGCG TCCTTGGCA CAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AU030935             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CTTGGCCCCTGAATACTTGCNCGATGGCCTGGCAACTCCG AAAATGATGTTTATGCTTTTGGAGTAGTAC TTTTGAGTTAATATCTGGAAAGGAGGCAATTACAAGGCCTGATGGATTGAACGANGGNTCAAACTCAGAAAGGCGTTCCTTGGCATCAGTTATGTTGAGTGCACTAAAGAATTGTCGTAACTCAATGTATATGGGGAGCCTGAAAGANTGCATTGACCCTAATCTAATGGACCTGTATCCANATGACTGTGTATACAAGATGGCCATGCTNGCGAAACAGTGCGTGGNGGAAGATCCTGTTCTTCGGCCAGACATGAAGCAGGCNGTAATCACG TATCGCAAATACTGCTGTCGTCGATCGNGTGGGAAGCGACGCTAGCTGGGAACAGCCAAGTGTTCNGTGGTCTTGTGGCTGGGAGGTGATCCTGTAAGATTGGCCTGGTTGCTACGGTGCTATCCCATGCGCTCTTCGGTGATCTCCTTCCCTGCTCCACTAGAGGCGTTTTCCCCTGTAACCTTCTCCTGCATTTTGCTGGTTTCTTGCCCAGTTGAGCNGTTTTCTGCATCTTCTTTTCAAAGTATCTACCACAGTGCAATATATTTCTTGGTGGGTGATATGTAACCATGTATGTATACCAAATGTGCCTTGCAAGTTCTAATGNNATGATNNNNTNNCAAAAAAAAA]
[+] EMBL AU030308             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GGCGTTCCTTGGCATCAGTTATGTTGAGTGCACTAAAGAATTGTCGTAACTCAATGTATATGGGGAGCCTGAAAGACTGCATTGACCCTAATCTAATGGACCTGTATCCACATGACTGTGTATACAAGATGGCCATGCTAGCGAAACAGTGCGTGGAGGAAGATCCTGTTCTTCGGCCAGACATGAAGCAGGCAGTAATCACG TATCGCAAATACTGCTGTCGTCGATCGAGTGGGAAGCGACGCTAGCTGGGAACAGCCAAGTGTTCAGTGGTCTTGTGGCTGGGAGGTGATCCTGTAAGATTGGCCTGGTTGCTACGGTGCTATCCCATGCGCTCTTCGGTGATCTCCTTCCCTGCTCCACTAGAGGCGTTTTCCCCTGTAACCTTCTCCTGCATTTTGCTGGTTTCTTGCCCAGTTGAGCAGTTTTCTGCATCTTCTTTTCAAAGTATCTACCACAGTGCAATATATTTCTTGGTGGGTGATATGTAACCATGTATGTATACCAAATGTGCCTTGCAAGTTCTAATGCAATGATCTTGCNCCAAAAAAAAA]




>consensus_7947#0
ACATCGGCAGATGTATCAGAACATCATTCCACAAAATTCCCTTATGGATGGGTTATTGGC
AGCATGGGAGTTGCACTTGCTTTGATTGCTATTGCTCTCCTTGCACTTGTTCTGTGCAAG
CTCTCCCAATACAATCCCCAAGCTCCAAATAACCAGGGAAAGAGCCCAGACCAGTCTATA
TCACACAAGTTTCAACNTCTTAAGAGTGGTAGTTTTTGTTATGGTTCTGGAAGATACTTA
TGTTGCCAATTTGGAAATGTGAACAATCAAGAACGGATGGCAGTGATCATCATATGAATA
CCCCAAAAGGTGTTGGAATGGACGTGTTTGATAGGGAGAAGCCCATTGTGTTTACCTATC
AAGAAATACTTGCATCAACCGATTCATTTTCTGATGCAAATCTTCTGGGTCATGGTACAT
ATGGCTCTGTTTATTATGGTGTTCTTCGAGACCAGGAGGTCGCTATAAAGAGAATGACAG
CAACTAAAACTAAAGAGTTTATAGTGGAGATGAAAGTTCTTTGTAAGGTCCATCATGCCA
GTCTGGTAGAGTTGATTGGCTATGCAGCAAGCAAGGATGAACTATACCTTATTTACGAGT
ACTCTCAAAAAGGTTCACTCAAGAATCACCTTCATGATCCTCAAAGCAAAGGTTACACAT
CATTGTCTTGGATCTACAGGGTCCAAATTGCTCTTGATGCGGCTAGAGGACTTGAATACA
TTCATGAGCATACAAAGGATCATTATGTTCACAGGGACATCAAATCGAGTAACATCTTGC
TCGATGAATCCTTCAGAGCAAAGATTTCAGATTTTGGTCTTGCAAAACTGGTAGTGAAGT
CAACTGATGCAGAGGCTTCTGTCACAAAAGTTGTGGGTACATTTGGTTACTTGGCCCCTG
AATACTTGCGCGATGGCCTGGCAACTACGAAAAATGATGTTTATGCTTTTGGAGTAGTAC
TTTTTGAGTTAATATCTGGAAAGGAGGCAATTACAAGGACTGATGGATTGAACGAAGGAT
CAAACTCAGAAAGGCGTTCCTTGGCATCAGTTATGTTGAGTGCACTAAAGAATTGTCGTA
ACTCAATGTATATGGGGAGCCTGAAAGACTGCATTGACCCTAATCTAATGGACCTGTATC
CACATGACTGTGTATACAAGATGGCCATGCTAGCGAAACAGTGCGTGGAGGAAGATCCTG
TTCTTCGGCCAGACATGAAGCAGGCAGTAATCACGTATCGCAAATACTGCTGTCGTCGAT
CGAGTGGGAAGCGACGCTAGCTGGGAACAGCCAAGTGTTCAGTGGTCTTGTGGCTGGGAG
GTGATCCTGTAAGATTGGCCTGGTTGCTACGGTGCTATCCCATGCGCTCTTCGGTGATCT
CCTTCCCTGCTCCACTAGAGGCGTTTTCCCCTGTAACCTTCTCCTGCATTTTGCTGGTTT
CTTGCCCAGTTGAGCAGTTTTCTGCATCTTCTTTTCAAAGTATCTACCACAGTGCAATAT
ATTTCTTGGTGGGTGATATGTAACCATGTATGTATACCAAATGTGCCTTGCAAGTTCTAA
TGCAATGATNNNNTNNCAAAAAAAAA
clustalw multiple alignements is not computed in this case