These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8009#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1934 fasta sequence [ATCCATTTCTTCCTCTACCATACTATACCTAGCTTGCCACCAACAACAGTACACCATGCCCAAGAAGAAGCTGTCACATAGGCTGTTCTCTGCCTTGGTATCCCTACTCCTTCATGGGAAGCCTATCTCTAGATCATCATCCAACACCAACACCACATTGCCACACCCTTCCTTGCTGCACAAGTCCTCCTCAAGCTTCCCTCCCATGGAGAAGCTCGCCGCGAAAACCCTAGTACTCGACGTCGAAGGCGGTTTGCTTAGATCATCCTCCTTGTTCCCCTACTTCATGCTTGTGGCACTAGAGGCAGGAGGGTTCTTGAGGGGCCTTGTGCTCCTCCTCCTCTACCCATTGCTATGTGTCATGGGAAGTGACATGGCCTTGAAGGTCATGGCAATGGTGTCCTTCTGCGGTTTACGGGCAAGCCGGTTTCGGGCCGGGCGAGCCGTGCTTCCCAAGTGGTTCCTTGAGGATGTTGGGGAGGAAGGGTTTGATGTGATGAGGAGTGCCATGAGGAGGGTGTGTGTGACAAAGATGCCTAGGATCATGGTTGAAGGGTTCTTGAAGGAGTACTTGGAGGTTGAGGTTGTTTCAGGTAGGGAGATGAAGGTGATTTGGGGGTTCTTCACTGGCATCATGGAGGAGGAAGAAGGTGGTGATCAAGAGGAGGTGTTGCTTGAGGAGAAGAAAATGTTGGTTGATGTTGTGGGCTTCTCTACCTCCTTGGAGTTCCTCCAACATCATCTCTCACATTGTTGCAAGGAGGTGTACCTGGTGACACGTGAGGAGAAGGCGAGGTGGTCGGCGCTGCCGCGCGACAAGTACCCGAAGCCGATGGTGTTCCACGACGGCCGCCTCGCGTTCCGGCCAGCCGCCGGCGACACGCTCGCCATGTTCACCTGGCTCCCCTTCGGCGCCGCCCTCGCCGTCGCCCGCCTCGCCGTCGCGCTCGCCGTGCCGTACAGGTACTCGACGCCGATCCTGGCCGCCACGGGCTTGTCGTGGCGCCTCAAGGGCGAGGCCCCCACGCCGCTCGCCGGCGCCGGCGACGGCGCGCGCCGGCGCGGGCAGCTGTTCGTGTGCAACCACCGGACGCTGATCGACCCGGTGTACGTGTCGGTGGCGCTGGACCGCCCCGTGCGCGCCGTGTCGTACAGCCTGAGCCGGCTGTCGGAGCTGATCTCGCCGATCGGGCGGACGGTGCGGCTGACGCGGGACCGCGACAGCGACGGGCGCGCCATGGCGCGGCTCCTCGACGGCGGCGACCTCGTCGTCGTCTGCCCCGAGGGGACGACGTGCCGGGAGCCGCGCCTGCTCCGGTTCAGCCCGCTGTTCGCGGAGCTGAGCGACGACGTGGTCCCCGTCGGGATCGCCGTCGACACGGCGATGTTCTAC-GCGACGACG-GCCGGCGGGCTCAAGTGCCTGGACCCGCTCTACTACATCGCCAACCCGAGGACGTGCTACGCCGTGCAGTTCCTGGAGAGGGTGGACACGTCGCCGGCGAGGGAGCGGAGGGCGCCGTCCACCGACGTGGCCAACCTCGTGCAGAGGAGGATGGGCGACGCGCTCGGCTACCGCTGCACCATGCTCACCAGGAAGGACAAGTACCTCATGCTCGCCGGCAACGATGGCGTCGTCAACACCACCCAAGACAACCACTCTGCTCCGGGGAAGAAGAAGATGCAATAATCATGAATTAGATTAGCCAAAAAAGTT-CTCAAAAAAGTTCTAGATAGATTTCGGTTGTTCTTTTATCTTTTTAATTATTTTTTTATGTTGCTGGGTAGTTTAATTTGGTGTGTGTTTAT-ACTGTATTTCATTCTTGCTTCAGTTTGGCTGGTGTGTTCATCAGGTTGATTTCTTC--TGTGTGT-TTT-AATC-AAATTAATGATTGTATAGAAACAACAAGAAGCTGGCACCATCAAGGAGCTTGTAGAGA] [+] EMBL AK120619 [ATCCATTTCTTCCTCTACCATACTATACCTAGCTTGCCACCAACAACAGTACACCATGCCCAAGAAGAAGCTGTCACATAGGCTGTTCTCTGCCTTGGTATCCCTACTCCTTCATGGGAAGCCTATCTCTAGATCATCATCCAACACCAACACCACATTGCCACACCCTTCCTTGCTGCACAAGTCCTCCTCAAGCTTCCCTCCCATGGAGAAGCTCGCCGCGAAAACCCTAGTACTCGACGTCGAAGGCGGTTTGCTTAGATCATCCTCCTTGTTCCCCTACTTCATGCTTGTGGCACTAGAGGCAGGAGGGTTCTTGAGGGGCCTTGTGCTCCTCCTCCTCTACCCATTGCTATGTGTCATGGGAAGTGACATGGCCTTGAAGGTCATGGCAATGGTGTCCTTCTGCGGTTTACGGGCAAGCCGGTTTCGGGCCGGGCGAGCCGTGCTTCCCAAGTGGTTCCTTGAGGATGTTGGGGAGGAAGGGTTTGATGTGATGAGGAGTGCCATGAGGAGGGTGTGTGTGACAAAGATGCCTAGGATCATGGTTGAAGGGTTCTTGAAGGAGTACTTGGAGGTTGAGGTTGTTTCAGGTAGGGAGATGAAGGTGATTTGGGGGTTCTTCACTGGCATCATGGAGGAGGAAGAAGGTGGTGATCAAGAGGAGGTGTTGCTTGAGGAGAAGAAAATGTTGGTTGATGTTGTGGGCTTCTCTACCTCCTTGGAGTTCCTCCAACATCATCTCTCACATTGTTGCAAGGAGGTGTACCTGGTGACACGTGAGGAGAAGGCGAGGTGGTCGGCGCTGCCGCGCGACAAGTACCCGAAGCCGATGGTGTTCCACGACGGCCGCCTCGCGTTCCGGCCAGCCGCCGGCGACACGCTCGCCATGTTCACCTGGCTCCCCTTCGGCGCCGCCCTCGCCGTCGCCCGCCTCGCCGTCGCGCTCGCCGTGCCGTACAGGTACTCGACGCCGATCCTGGCCGCCACGGGCTTGTCGTGGCGCCTCAAGGGCGAGGCCCCCACGCCGCTCGCCGGCGCCGGCGACGGCGCGCGCCGGCGCGGGCAGCTGTTCGTGTGCAACCACCGGACGCTGATCGACCCGGTGTACGTGTCGGTGGCGCTGGACCGCCCCGTGCGCGCCGTGTCGTACAGCCTGAGCCGGCTGTCGGAGCTGATCTCGCCGATCGGGCGGACGGTGCGGCTGACGCGGGACCGCGACAGCGACGGGCGCGCCATGGCGCGGCTCCTCGACGGCGGCGACCTCGTCGTCGTCTGCCCCGAGGGGACGACGTGCCGGGAGCCGTGCCTGCTCCGGTTCAGCCCGCTGTTCGCGGAGCTGAGCGACGACGTGGTCCCCGTCGGGATCGCCGTCGACACGGCGATGTTCTAC GCGACGACG GCCGGCGGGCTCAAGTGCCTGGACCCGCTCTACTACATCGCCAACCCGAGGACGTGCTACGCCGTGCAGTTCCTGGAGAGGGTGGACACGTCGCCGGCGAGGGAGCGGAGGGCGCCGTCCACCGACGTGGCCAACCTCGTGCAGAGGAGGATGGGCGACGCGCTCGGCTACCGCTGCACCATGCTCACCAGGAAGGACAAGTACCTCATGCTCGCCGGCAACGATGGCGTCGTCAACACCACCCAAGACAACCACTCTGCTCCGGGGAAGAAGAAGATGCAATAATTATGAATTAGATTAGCCAAAAAAGTT CTCAAAAAAGTTCTAGATAGATTTCGGTTGTTCTTTTATCTTTTTAATTATTTTTTTATGTTGCTGGGTAGTTTAATTTGGTGTGTGTTTAT ACTGTATTTCATTCTTGCTTCAGTTTGGCTGGTGTGTTCATCAGGTTGATTTCTTC TGTGTGT TTT AATC AAATTAATGATTGTATAGAAACAACAAGAAGCTGGCACCATCAAGGAGCTTGTAGAGA] [+] EMBL CB640653 [ TCATCCCACACCAACACCACATTGCCACACCCTTCCTTGCTGCACAAGTCCTCCTCAAGCTTCCCTCCCATGGAGAAGCTCGCCGCGAAAACCCTAGTACTCGACGTCGAAGGCGGTTTGCTTAGATCATCCTCCTTGTTCCCCTACTTCATGCTTGTGGCACTAGAGGCAGGATGTTTTTTGAGGGGCCTTGTGCTCCTCCTCCTCTACCCATTGCTAT ] [+] EMBL CB628036 [ GCCGCGTCTGCTCCGGTTCAGCCCGCTGTTCGCGGAGCTGAGCGACGACGTGGTCCCCGTCGGGATCGCCGTCGACACGGCGATGTTCTAC GCGACGACA GCCGGCGGGCTCAAGTGCCTGGACCCGCTCTACTACATCGCCAACCCGAGGACGTGCTACGCCGTGCAGTTCCTGGAGAGGGTGGACACGTCGCCGGCGAGGGAGCGGAGGGCGCCGTCCACCGACGTGGCCAACCTCGTGCAGAGGAGGATGGGCGACGCGCTCGGCTACCGCTGCACCATGCTCACCAGGAAGGACAAGTACCTCATGCTCGCCGGCAACGATGGCGTCGTCAACACCACCCAAGACAACCACTCTTCTCCGGGGAAGAAGAAGATGCAATAATCATGAATTAGATTAGCCAAAAAAGTT CTCAAAAAAGTTCTAGATAGATTTCGGTTGTTCTTTTATCTTTTTAATTATTTTTTTATGTTGCTGGGTAGTTTAATTTGGTGTGTGTTTAT ACTGTATTTCATTCTTGCTTCAGTTTGGCTGGTGTGTTCATCAGGTTGATTTCTTCTGTGTGTGT TTT AATC AAATTAATGATTGTATAGAAACAACAAGAAGC ] [+] EMBL BQ907306 [ tgcCCTGCTCCGGTTCA CCCGCTGTTNGCGGAGCTGAGCGACGACGTGGTCCCCGTGGGGATCGCCGTCGACACGGCGATGTTCTACTGCGACGACGTGCCGGCGGGCTCAAGTGCCTGGACCCGCTCTACTACATCGCCAACCCGAGGACGTGCTACGCCGTGCAGTTCCTGGAGAGGGTGGACACGTCGCCGGCGAGGGAGCGGAGGGC CCGTCCACCGACGTGGCCAACCTCGTGCAGAGGAGGATGGGCGACGCGCTCGGCTACCGCTGCACCATGCTCACCAGGAAGGACAAGTACCTCATGCTCGCCGGCAACGATGGCGTCGTCAACACCACCCAAGACAACCACTCTGCTCCGGGGAAGAAGAAGATGCAATAATCATGAACTAGATTAGCCAAAAAAGTTATTAAAAAAAGTTCTAGATAGATTTCGGTTGTTCTTTTTTCTTTTTAATTATTTTTTTATGTTGCT GGTAGTTTAATTTGGTGTGTGTTTATAACTGTATTTCCTTCTTGCTTCAGTTTGGCTGGTGTGTTCATCAGGTTGATTTCTTC TGTGTGTGTTTAAATCAAAATTAATGATTGTATAGAAAAAAaa ] [+] EMBL CF196603 [ TCCCCGTCGGGATCGCCGTCGACACGGCGATGTTCTAC GCGACGACG GCCGGCGGGCTCAAGTGCCTGGACCCGCTCTACTACATCGCCAACCCGAGGACGTGCTACGCCGTGCAGTTCCTGGAGAGGGTGGACACGTCGCCGGCGAGGGAGCGGAGGGCGCCGTCCACCGACGTGGCCAACCTCGTGCAGAGGAGGATGGGCGACGCGCTCGGCTACCGCTGCACCATGCTCACCAGGAAGGACAAGTACCTCATGCTCGCCGGCAACGATGGCGTCGTCAACACCACCCAAGACAACCACTCTGCTCCGGGGAAGAAGAAGATGCAATAATCATGAATTAGATTAGCCNAAAAAGTT CTCAAAAAAGTTCTAGATAGATTTCNNNNNNTCTTTTATCTTTTTAATTATTTTTTTATGTTGCTGGG ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||