These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8025#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 694 fasta sequence [TTTTTTTGGCCACATAACCTGAGCTTTGATTAGAAAACATACAGACTTCCAGAACTCAGGAGTAACAAACAACTTCAGTTAAGAAAAAAACAGAGAACGAACTTGTTCCTTTGATGTGAATACTTGCAATTTCTATTTCTGACTTCATGTCTCCATATTTACATCATTCAGAAGAAGAAAAATGAAAAAGATTAACTCTACATAATTTGTCAGAAGCTAGAAGCTGCTACTTGTTGGACAAATCCCAAGGATTGTGCAAAGCCACTCCCATAGTGGCAAGGCTTCACAATGGTGCTCAGGAATGCCCTGACAACTTCTTCTGATGCATTTCTTTTGAGCAAGCACATGACATACTCCATAACCTCTGCATCACAAGGCAATGTGATCCCTCCATCGCTTGTGAAGCCGAACTCCTCCTGAGAGATCCTGAGGAGCTCTGCGAAGATCGTCGTGGCGAGGAACGCCAACGGGACCTCGAACCGCCTCCCATCGGCGGTGTACATGATGCAATGGCCCTTCACTGCCACAGAACTGCAGCATTTATCGGTTGCTTTGGGCGCCGTCCATGTAAGTCTCTTCCTGCCGAAGGCTGCCATTCTTTGCCACTTCTTCACCATTTGAGCGAGTCTCTTGGCACTGATCATGGTTGCTCTCTTTCTTTCTTGCCTGAAATTTTTTGTACGAGGTGGGATTC] [+] EMBL CA759673 [TTTTTTTGGCCACATAACCTGAGCTTTGATTAGAAAACATACAGACTTCCAGAACTCAGGAGTAACAAACAACTTCAGTTAAGAAAAAAACAGAGAACGAACTTGTTCCTTTGATGTGAATACTTGCAATTTCTATTTCTGACTTCATGTCTCCATATTTACATCATTCAGAAGAAGAAAAATGAAAAAGATTAACTCTACATAATTTGTCAGAAGCTAGAAGCTGCTACTTGTTGGACAAATCCCAAGGATTGTGCAAAGCCACTCCCATAGTGGCAAGGCTTCACAATGGTGCTCAGGAATGCCCTGACAACTTCTTCTGATGCATTTCTTTTGAGCAAGCACATGACATACTCCATAACCTCTGCATCACAAGGCAATGTGATCCCTCCATCGCTTGTGAAGCCGAACTCCTCCTGAGAGATCCTGAGGAGCTCTGCGAAGATCGTCGTGGCGAGGAACGCCAACGGGACCTCGAACCGCCTCCCATCGGCGGTGTACATGATGCAATGGCCCTTCACTGCCACAGAACTGCAGCATTTATCGGTTGCTTTGGGCGCCGTCCATGTAAGTCTCTTCCTGCCGAAGGCTGCCATTCTTTGCCACTTCTTCACCATTTGAGCGAGTCTCTTGGCACTGATCATGGTTGCTCTCTTTCTTTCTTGCCTGAAATTTTTTGTACGAGGTGGGATTC] consensusID : consensus_8025#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 611 fasta sequence [TTTTTTGATATNAATAATCACAATNTCTATNACNCCCATCATGTTTCCATATTTACATCATTCAAAGGAAGATAAAAGGAGAAAGATTAGCTATACGTAAACTTTCAGAAGCTAGAAGCNGCTACTTGTTGGA-CAGACCCC-AAGGATTGTGCAAAGCCATTCCCATAGTGGCAAGATTTCACAATGGTGCTCAGGAATGCCCTGACAACTTCCTCGGATGCATTTCTTCTAAGCAAGCACAGGACATACTCCATGACCTCTGCATCACAAGGCAATGTGATCCCTCCATCGGTTGTGAAGCCAAACTCCTCCTGAGACATCCTGAGGAGCTCTGCGAAGATCGTCGTGGCGAGGAACGCCAACGGGACCTCAAACCGCCGCCCATCAGCAGTGTACATGATGCAATGGCCCTTCACTGCCACAGAACTGCAGCATTCATCGGTTGCTTTGGGTGTCGTCCATGTGATCCTCTTCCTCCCGAGGGCTGCTATTCTTTGCCACTTCTTTGCCATTTGAGCGAGCCTCTTGGCACTGATCATGGTTGCTCTCCTTCTTTCTTGTCTGAAATTTTTTGTATAAGGTAGTATTCAGCTATGAGATATGTTTGGGTT] [-] EMBL AU029999 [TTTTTTGATATNAATAATCACAATNTCTATNACNCCCATCATGTTTCCATATTTACATCATTCAAAGGAAGATAAAAGGAGAAAGATTAGCTATACGTAAACTTTCAGAAGCTAGAAGCNGCTACTTGTTGGA CAGACCCC AAGGATTGTGCAAAGCCATNCCCATAGNGGCAAGATTTCACAATGGTGCTCAGGAATNCCCTGACAACNTCCTCGGATGCATTTCNTCTAAGCAAGCAC ] [-] EMBL AK062365 [ ATCACAATGTCTATTACTCCCATCATGTTTCCATATTTACATCATTCAAAGGAAGATAAAAGGAGAAAGATTAGCTATACGTAAACTTTCAGAAGCTAGAAGCTGCTACTTGTTGGA CAGACCCC AAGGATTGTGCAAAGCCATTCCCATAGTGGCAAGATTTCACAATGGTGCTCAGGAATGCCCTGACAACTTCCTCGGATGCATTTCTTCTAAGCAAGCACAGGACATACTCCATGACCTCTGCATCACAAGGCAATGTGATCCCTCCATCGGTTGTGAAGCCAAACTCCTCCTGAGACATCCTGAGGAGCTCTGCGAAGATCATCGTGGCGAGGAACGCCAACGGGACCTCAAACCGCCGCCCATCAGCAGTGTACATGATGCAATGGCCCTTCACTGCCACAGAACTGCAGCATTCATCGGTTGCTTTGGGTGTCGTCCATGTGATCCTCTTCCTCCCGAGGGCTGCTATTCTTTGCCACTTCTTTGCCATTTGAGCGAGCCTCTTGGCACTGATCATGGTTGCTCTCCTTCTTTCTTGTCTGAAATTTTTTGTATAAGGTAGTATTCAGCTATGAGATATGTTTGGGTT] [-] EMBL OS1321783 [ ACTTG TGGANAAGACCCCNAAGGATTGTG AAAGCAATCCCCATAGTGGCAAGATTTCACAATGGTGCTCAGGAATGCCCTGACAACTTCCTCGGATGCATTTCTTCTAAGCAAGCACAGGACATACTCCATGACCTCTGCATCACAAGGCAATGTGATCCCTCCATCGGTTGTGAAGCCAAACTCCTCCTGAGACATCCTGAGGAGCTCTGCGAAGATCGTCGT GCGAGGAACGCCAACGGGACCTCAAACCGCCGCCCATCAGCAGTGTACATGATGCAATGGCCCTTCACTGCCACAGAACTGCAGCATTCATCGGTTGCTTTGGGTGTCGTCCATGTGATCCTCTTCCTCCCGAGGGCTGCTATTCTTTGCNACTTCTTTGCCATTTGAGCGA CCTCTTGGCACTGATCATGGTTGCTCTC ] [-] EMBL AU172957 [ CATTCCCATAGTGGCAAGATTTCACAATGGTGCTCAGGAATGCCCTGACAACTTCCTCGGATGCATTTCTTCTAAGCAAGCACAGGACATACTCCATGACCTCTGCATCACAAGGCAATGTGATCCCTCCATCGGTTGTGAAGCCAAACTCCTCCTGAGACATCCTGAGGAGCTCTGCGAAGATCGTCGTGGCGAGGAACGCCAACGGGACCTCAAACCGCCGCCCATCAGCAGTGTACATGATGCAATGGCCCTTCACTGCCACAGAACTGCAGCATTCATCGGTTGCTTTGGGTGTCGTCCATGTGATCCTCTTCCTCCCGAGGGCTGCTATTCTTTGCCACTTCTTTGCCATTTGAGCGAGCCTCTTGGCACTGATCATGGTTGCTCTCCTTCTTTCTTGTCTGAAATTTTTTGTATAAGGTAGT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8025#0 TTTTTTTGGCCACATAACCTGAGCTTTGATTAGAAAACATACAGACTTCCAGAACTCAGG 60 consensus_8025#1 ------------------------------------------------------------ consensus_8025#0 AGTAACAAACAACTTCAGTTAAGAAAAAAACAGAGAACGAACTTGTTCCTTTGATGTGAA 120 consensus_8025#1 ----------------------------------------------TTTTTTGATATNAA 14 * ****** * ** consensus_8025#0 TACTTGCAATTTCTATTTCTGACTTCATGTCTCCATATTTACATCATTCAGAAGAAGA-A 179 consensus_8025#1 TAATCACAATNTCTATNACNCCCATCATGTTTCCATATTTACATCATTCAAAGGAAGATA 74 ** * **** ***** * * ****** ******************* * ***** * consensus_8025#0 AAATGAAAAAGATTAACTCTACATAATTTGTCAGAAGCTAGAAGCTGCTACTTGTTGGAC 239 consensus_8025#1 AAAGGAGAAAGATTAGCTATACGTAAACTTTCAGAAGCTAGAAGCNGCTACTTGTTGGAC 134 *** ** ******** ** *** *** * *************** ************** consensus_8025#0 AAATCCCAAGGATTGTGCAAAGCCACTCCCATAGTGGCAAGGCTTCACAATGGTGCTCAG 299 consensus_8025#1 AGACCCCAAGGATTGTGCAAAGCCATTCCCATAGTGGCAAGATTTCACAATGGTGCTCAG 194 * * ********************* *************** ***************** consensus_8025#0 GAATGCCCTGACAACTTCTTCTGATGCATTTCTTTTGAGCAAGCACATGACATACTCCAT 359 consensus_8025#1 GAATGCCCTGACAACTTCCTCGGATGCATTTCTTCTAAGCAAGCACAGGACATACTCCAT 254 ****************** ** ************ * ********** ************ consensus_8025#0 AACCTCTGCATCACAAGGCAATGTGATCCCTCCATCGCTTGTGAAGCCGAACTCCTCCTG 419 consensus_8025#1 GACCTCTGCATCACAAGGCAATGTGATCCCTCCATCGGTTGTGAAGCCAAACTCCTCCTG 314 ************************************ ********** *********** consensus_8025#0 AGAGATCCTGAGGAGCTCTGCGAAGATCGTCGTGGCGAGGAACGCCAACGGGACCTCGAA 479 consensus_8025#1 AGACATCCTGAGGAGCTCTGCGAAGATCGTCGTGGCGAGGAACGCCAACGGGACCTCAAA 374 *** ***************************************************** ** consensus_8025#0 CCGCCTCCCATCGGCGGTGTACATGATGCAATGGCCCTTCACTGCCACAGAACTGCAGCA 539 consensus_8025#1 CCGCCGCCCATCAGCAGTGTACATGATGCAATGGCCCTTCACTGCCACAGAACTGCAGCA 434 ***** ****** ** ******************************************** consensus_8025#0 TTTATCGGTTGCTTTGGGCGCCGTCCATGTAAGTCTCTTCCTGCCGAAGGCTGCCATTCT 599 consensus_8025#1 TTCATCGGTTGCTTTGGGTGTCGTCCATGTGATCCTCTTCCTCCCGAGGGCTGCTATTCT 494 ** *************** * ********* * ******** **** ****** ***** consensus_8025#0 TTGCCACTTCTTCACCATTTGAGCGAGTCTCTTGGCACTGATCATGGTTGCTCTCTTTCT 659 consensus_8025#1 TTGCCACTTCTTTGCCATTTGAGCGAGCCTCTTGGCACTGATCATGGTTGCTCTCCTTCT 554 ************ ************* *************************** **** consensus_8025#0 TTCTTGCCTGAAATTTTTTGTACGAGGTGGGATTC---------------------- 694 consensus_8025#1 TTCTTGTCTGAAATTTTTTGTATAAGGTAGTATTCAGCTATGAGATATGTTTGGGTT 611 ****** *************** **** * **** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||