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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8070#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1666 fasta sequence
[CCCTTCCTCATCTCTCTCTCTCTCCGGGGCTCTCTGGGCAGGGGAGCAAAGCGGCAGCGGCGGCGGGAGCAGGGGAGCAAGGCGGCAGCGGCGAGGGGAGCAAGGCGTCGGCGGCGGCGGCCTCCGATCTCCCCCACCCTCTTCGCTCTGGGCTGAGGCCGCCGTGCTCGCCCCGTCATCTTCGCTCTGCCCAAGGCGGCGGCGGGGGGAGCAAGACGTCGGCGGCGGCGGCCTCCGATCTCTCCCGCCCTCTTCGCTCTGGGCTGAGGCCGCCGTGCTAGGTGTGTGGGCATCGTTGTCGTGCAGGGCGTGCGGGCGTCGTCGTCGGGCAGGGCGTGCGGGCGTTGCTCTGGGAGGAGTAGCAATGGGCGGCGGGGAGCGGGGCTGAGCGGCAGCCGGCGGAGACGGCGTGCAAGCGCGCGGCGGCCGACGGAGCAGAGTGGCGGCGGGCGAGTGCGAGGCGGCCGGCGAAGCGGAGCGGAGGCGGGCAAGCACGCGGCGGCCGGCGGATGGGGAGCGGTCGTCACTCGGCTGCCGCGTCGTCGCCACCGACGTCCCCGACGGCGTGCCCAACCTCGCCGGCCTCGACGCCGACCATCTCCCTCTCGACGTCGGCGACGAGCGTGGAGTCCGGGTTGCAGCCCCACGGAGGCGCAAATGAGTTGAGCTAAGATATGCAGGATGCTTAGCTAGCTTGAGATGATTGAGACTGGATTTTCATGGGCTTTCTTTGTCCTGCATGCCTCCATGCCGATATCTAGCTAGAGACGCGCGCAGCAGGGGCGGCCGACCGGCCGGCGGAAGAGGAGAAATCTTGGCGGTGGACTGGTGGTTTTTGCGGGGTTGCAGAATTTGGTGGTCCTACGTGGTGGCGGCACGAGAGAGGCCGGCTGAAAACGGAGGGCGCGTACGCGTCGCGCAGCGCCGTGAACGGCTCCGGCGGCCGCGTCACGAGCGTGTCCAGGGCCGTGCGCACGGGCGCGCAAGGCGGCGTCGCTGACAGGGCCGACGCTTTCCCCTGTCGACTTCTACTACCTCCCCCGCCGCTCCTTCAGCTGGCCGCCCGCGCCGCGACGCTGCGCCTCCCCCGACCTGAGGAAGGGGACCGCTCCGCCGTGGTTCCTCTCCCCGTCGAACAGGTTGACGACGACGGTAGCACCTGGACGCCGCGGAGGAAGTCGTGCAGCGCGGCGGCGGCATCCCGCAGCGAGGCGGCGTAGGCGCGGTGTGCGTCGGCGAGCGCGTAGCGGTGGCGGATGGCGTCGGCCAGCAGCGGGGCGCGGTCCCGGCACAGCGCGACGGCCGCGCCACCCCCATGCAGCAGCAGTTCCCCTTCCCCTCGCGGGCGTCGCCGCCGCATCGCCGGCTGTCCGTCGGGCCTCCTCGCCTCGGCGACCTCCTCCCCACCGCCGGCTGGCCTGCCCGGAGAGAAGAGAGAAGAGAGAGAGAGGAGGAGGAAGGGAGAGGGGGAGAAGAGAACATGTTGACGTGGCGCCTAACATGGGGGTCCCACGTGGGTCCTACGCTGACTCAGCCAACACGTCAGATAAAACCGCGACCAAAACCACCGAGGGACCTAAAACAAACAGTTTTGTTAGTTGAGGGACATCCGGTATCTGGTTTTGCGATTGGGGACGATTTTGTGTCTCGATAACAAGTTGAGGGA]
[+] EMBL AK119967 [CCCTTCCTCATCTCTCTCTCTCTCCGGGGCTCTCTGGGCAGGGGAGCAAAGCGGCAGCGGCGGCGGGAGCAGGGGAGCAAGGCGGCAGCGGCGAGGGGAGCAAGGCGTCGGCGGCGGCGGCCTCCGATCTCCCCCACCCTCTTCGCTCTGGGCTGAGGCCGCCGTGCTCGCCCCGTCATCTTCGCTCTGCCCAAGGCGGCGGCGGGGGGAGCAAGACGTCGGCGGCGGCGGCCTCCGATCTCTCCCGCCCTCTTCGCTCTGGGCTGAGGCCGCCGTGCTAGGTGTGTGGGCATCGTTGTCGTGCAGGGCGTGCGGGCGTCGTCGTCGGGCAGGGCGTGCGGGCGTTGCTCTGGGAGGAGTAGCAATGGGCGGCGGGGAGCGGGGCTGAGCGGCAGCCGGCGGAGACGGCGTGCAAGCGCGCGGCGGCCGACGGAGCAGAGTGGCGGCGGGCGAGTGCGAGGCGGCCGGCGAAGCGGAGCGGAGGCGGGCAAGCACGCGGCGGCCGGCGGATGGGGAGCGGTCGTCACTCGGCTGCCGCGTCGTCGCCACCGACGTCCCCGACGGCGTGCCCAACCTCGCCGGCCTCGACGCCGACCATCTCCCTCTCGACGTCGGCGACGAGCGTGGAGTCCGGGTTGCAGCCCCACGGAGGCGCAAATGAGTTGAGCTAAGATATGCAGGATGCTTAGCTAGCTTGAGATGATTGAGACTGGATTTTCATGGGCTTTCTTTGTCCTGCATGCCTCCATGCCGATATCTAGCTAGAGACGCGCGCAGCAGGGGCGGCCGACCGGCCGGCGGAAGAGGAGAAATCTTGGCGGTGGACTGGTGGTTTTTGCGGGGTTGCAGAATTTGGTGGTCCTACGTGGTGGCGGCACGAGAGAGGCCGGCTGAAAACGGAGGGCGCGTACGCGTCGCGCAGCGCCGTGAACGGCTCCGGCGGCCGCGTCACGAGCGTGTCCAGGGCCGTGCGCACGGGCGCGCAAGGCGGCGTCGCTGACAGGGCCGACGCTTTCCCCTGTCGACTTCTACTACCTCCCCCGCCGCTCCTTCAGCTGGCCGCCCGCGCCGCGACGCTGCGCCTCCCCCGACCTGAGGAAGGGGACCGCTCCGCCGTGGTTCCTCTCCCCGTCGAACAGGTTGACGACGACGGTAGCACCTGGACGCCGCGGAGGAAGTCGTGCAGCGCGGCGGCGGCATCCCGCAGCGAGGCGGCGTAGGCGCGGTGTGCGTCGGCGAGCGCGTAGCGGTGGCGGATGGCGTCGGCCAGCAGCGGGGCGCGGTCCCGGCACAGCGCGACGGCCGCGCCACCCCCATGCAGCAGCAGTTCCCCTTCCCCTCGCGGGCGTCGCCGCCGCATCGCCGGCTGTCCGTCGGGCCTCCTCGCCTCGGCGACCTCCTCCCCACCGCCGGCTGGCCTGCCCGGAGAGAAGAGAGAAGAGAGAGAGAGGAGGAGGAAGGGAGAGGGGGAGAAGAGAACATGTTGACGTGGCGCCTAACATGGGGGTCCCACGTGGGTCCTACGCTGACTCAGCCAACACGTCAGATAAAACCGCGACCAAAACCACCGAGGGACCTAAAACAAACAGTTTTGTTAGTTGAGGGACATCCGGTATCTGGTTTTGCGATTGGGGACGATTTTGTGTCTCGATAACAAGTTGAGGGA]
[+] EMBL C74307 [ CCGGGGCTCTCTGGGCAGGGGANCAAAGCGNCA CGTCGGCGGGA NAGGGGAGCAAGGCNGCA NGGCGAGGGGAGCAAGGCGTCGGCGGCGGCNGCCTCCGATCTCCCCCACCCTCTTCGCTCTGGGCTGANGCCGCCGTGCTCNCCCCGTCATCTTCGCTCTGCCCAANGCGGCGGCGGGGGGAGCAAGACGTCGGCGGCGGCNGCCTCCGATCTCTCCCGCCCTCTTCGCTCTNGGCTGAGGC ]
[+] EMBL AU108286 [ GAAGCGGAGCGGAGGCGGGCAAGCACGCGGCGGCCGGCGGATGGGGAGCGGTCGTCACTCGGCTGCCGCGTCGTCGCCACCGACGTCCCCGACGGCGTGCCCAACCTCGCCGGCCTCGACGCCGACCATCTCCCTCTCGACGTCGGCGACGAGCGTGGAGTCCGGGTTGCAGCCCCACGGAGGCGCAAATGAGTTGAGCTAAGATATGCAGGATGCTTAGCTAGCTTGAGATGATTGAGACTGGATTTTCAaaaaaa ]
consensusID : consensus_8070#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 518 fasta sequence
[AGAGCGCGCGGCGAGTGCGAGCGNCCGGCGAAGCGGACCGGAGGCGGGCAAGCGCGCGGCGGCTGGCGGATGGGGACGGTCGTCACTCGGCTCCGCGTCGTCGCCACCGACGTCCCCGACCGCGTGCCCAGCCTCGCCGGCCTCGACGCCGACCATCTCCCTCTCGACGTCGGCGACGAGCGTGGAGTCCGGGTTGCCGCCCCACGGAGGCGCAGCCGCCGTTGCCGCGGTGCGGGCGCCGAGCACGCTCGTCAGGCGAAGCACGAACGTGGTCTTCCCGCACCCGGAGTCGGCAGCCAGCCCGATCACCACCGTCCCGCCTGACGCCGCCGCCGCCACGGAGCACGACACAAAAGCGAGACCAAGGAGTAGGGAGAGCTTGCAGTGTGGTGTCTGTTCTTGCTTGATGAGTTGCTTTCCTCTCTTAGCTCGTTGTCAGCTCAGCCTCAGCTCAGCGACAAAGTATCGATCAAATGAGTTGAGCTAAGATATGCAGGATGCTTAGCTAAAAAAAAAAA]
[+] EMBL BQ906873 [AGAGCGCGCGGCGAGTGCGAGCGNCCGGCGAAGCGGACCGGAGGCGGGCAAGCGCGCGGCGGCTGGCGGATGGGGACGGTCGTCACTCGGCTCCGCGTCGTCGCCACCGACGTCCCCGACCGCGTGCCCAGCCTCGCCGGCCTCGACGCCGACCATCTCCCTCTCGACGTCGGCGACGAGCGTGGAGTCCGGGTTGCCGCCCCACGGAGGCGCAGCCGCCGTTGCCGCGGTGCGGGCGCCGAGCACGCTCGTCAGGCGAAGCACGAACGTGGTCTTCCCGCACCCGGAGTCGGCAGCCAGCCCGATCACCACCGTCCCGCCTGACGCCGCCGCCGCCACGGAGCACGACACAAAAGCGAGACCAAGGAGTAGGGAGAGCTTGCAGTGTGGTGTCTGTTCTTGCTTGATGAGTTGCTTTCCTCTCTTAGCTCGTTGTCAGCTCAGCCTCAGCTCAGCGACAAAGTATCGATCAAATGAGTTGAGCTAAGATATGCAGGATGCTTAGCTAAAAAAAAAAA]
consensusID : consensus_8070#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 416 fasta sequence
[CCCACGTTGCAGCTGCCACCGCCTCTCCGCCAGCGCGCTCGCCCGCCAACGCCGCCTCGCCCTACCGACGCCCTCCCCTTCTCCCGTGTCTCCGCCACCGCGTCGCCGCCGCCGCCACATCACCGGCCGGCTGTCGGACCTCCTCGCCTCGGCGACCTCCTCCCCACCACCGGCTGGCCTGCCAGAGAGAAGAGTGAGTGAGAGAGAGAGAGAGAGAGGAGGAAGGGACAGGCCGGCCTGCTGATGTGGCTTGCTGACGTGGCATTCTGACATATAAGGCCCACACTGACTCAGTCGCCACGTCGGATCTAGTTTTTACTGGTTTATAAGTTAGGGGGTGTGTTATATCTGGTTTTTCGGTTGGTGGATGATTTTGTAAAGGGATGACAAGTTGAGGGACCTTCGGTGTACTTTTC]
[-] EMBL CB666594 [CCCACGTTGCAGCTGCCACCGCCTCTCCGCCAGCGCGCTCGCCCGCCAACGCCGCCTCGCCCTACCGACGCCCTCCCCTTCTCCCGTGTCTCCGCCACCGCGTCGCCGCCGCCGCCACATCACCGGCCGGCTGTCGGACCTCCTCGCCTCGGCGACCTCCTCCCCACCACCGGCTGGCCTGCCAGAGAGAAGAGTGAGTGAGAGAGAGAGAGAGAGAGGAGGAAGGGACAGGCCGGCCTGCTGATGTGGCTTGCTGACGTGGCATTCTGACATATAAGGCCCACACTGACTCAGTCGCCACGTCGGATCTAGTTTTTACTGGTTTATAAGTTAGGGGGTGTGTTATATCTGGTTTTTCGGTTGGTGGATGATTTTGTAAAGGGATGACAAGTTGAGGGACCTTCGGTGTACTTTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8070#0 CCCTTCCTCATCTCTCTCTCTCTCCGGGGCTCTCTGGGCAGGGGAGCAAAGCGGCAGCGG 60
consensus_8070#2 ------------------------------------------------------------
consensus_8070#1 ------------------------------------------------------------
consensus_8070#0 CGGCGGGAGCAGGGGAGCAAGGCGGCAGCGGCGAGGGGAGCAAGGCGTCGGCGGCGGCGG 120
consensus_8070#2 ------------------------------------------------------------
consensus_8070#1 ------------------------------------------------------------
consensus_8070#0 CCTCCGATCTCCCCCACCCTCTTCGCTCTGGGCTGAGGCCGCCGTGCTCGCCCCGTCATC 180
consensus_8070#2 ------------------------------------------------------------
consensus_8070#1 ------------------------------------------------------------
consensus_8070#0 TTCGCTCTGCCCAAGGCGGCGGCGGGGGGAGCAAGACGTCGGCGGCGGCGGCCTCCGATC 240
consensus_8070#2 ------------------------------------------------------------
consensus_8070#1 ------------------------------------------------------------
consensus_8070#0 TCTCCCGCCCTCTTCGCTCTGGGCTGAGGCCGCCGTGCTAGGTGTGTGGGCATCGTTGTC 300
consensus_8070#2 ------------------------------------------------------------
consensus_8070#1 ------------------------------------------------------------
consensus_8070#0 GTGCAGGGCGTGCGGGCGTCGTCGTCGGGCAGGGCGTGCGGGCGTTGCTCTGGGAGGAGT 360
consensus_8070#2 ------------------------------------------------------------
consensus_8070#1 ------------------------------------------------------------
consensus_8070#0 AGCAATGGGCGGCGGGGAGCGGGGCTGAGCGGCAGCCGGCGGAGACGGCGTGCAAGCGCG 420
consensus_8070#2 ------------------------------------------------------------
consensus_8070#1 ------------------------------------------------------------
consensus_8070#0 CGGCGGCCGACGGAGCAGAGTGGCGGCGGGCGAGTGCGAGGCGGCCGGCGAAGCGGAGCG 480
consensus_8070#2 ------------------------------------------------------------
consensus_8070#1 ------------------------------------------------------------
consensus_8070#0 GAGGCGGGCAAGCACGCGGCGGCCGGCGGATGGGGAGCGGTCGTCACTCGGCTGCCGCGT 540
consensus_8070#2 ------------------------------------------------------------
consensus_8070#1 ------------------------------------------------------------
consensus_8070#0 CGTCGCCACCGACGTCCCCGACGGCGTGCCCAACCTCGCCGGCCTCGACGCCGACCATCT 600
consensus_8070#2 ------------------------------------------------------------
consensus_8070#1 ------------------------------------------------------------
consensus_8070#0 CCCTCTCGACGTCGGCGACGAGCGTGGAGTCCGGGTTGCAGCCCCACGGAGGCGCAAATG 660
consensus_8070#2 ------------------------------------------------------------
consensus_8070#1 ------------------------------------------------------------
consensus_8070#0 AGTTGAGCTAAGATATGCAGGATGCTTAGCTAGCTTGAGATGATTGAGACTGGATTTTCA 720
consensus_8070#2 ------------------------------------------------------------
consensus_8070#1 ------------------------------------------------------------
consensus_8070#0 TGGGCTTTCTTTGTCCTGCATGCCTCCATGCCGATATCTAGCTAGAGACGCGCGCAGCAG 780
consensus_8070#2 ------------------------------------------------------------
consensus_8070#1 ------------------------------------------------------------
consensus_8070#0 GGGCGGCCGACCGGCCGGCGGAAGAGGAGAAATCTTGGCGGTGGACTGGTGGTTTTTGCG 840
consensus_8070#2 ------------------------------------------------------------
consensus_8070#1 ------------------------------------------------------------
consensus_8070#0 GGGTTGCAGAATTTGGTGGTCCTACGTGGTGGCGGCACGAGAGAGGCCGGCTGAAAACGG 900
consensus_8070#2 ------------------------------------------------------------
consensus_8070#1 ------------------------------------------------------------
consensus_8070#0 AGGGCGCGTACGCGTCGCGCAGCGCCGTGAACGGCTCCGGCGGCCGCGTCACGAGCGTGT 960
consensus_8070#2 ------------------------------------------------------------
consensus_8070#1 ------------------------------------------------------------
consensus_8070#0 CCAGGGCCGTGCGCACGGGCGCGCAAGGCGGCGTCGCTGACAGGGCCGACGCTTTCCCCT 1020
consensus_8070#2 ------------------------------------------------------------
consensus_8070#1 ------------------------------------------------------------
consensus_8070#0 GTCGACTTCTACTACCTCCCCCGCCGCTCCTTCAGCTGGCCGCCCGCGCCGCGACGCTGC 1080
consensus_8070#2 ------------------------------------------------------------
consensus_8070#1 ------------------------------------------------------------
consensus_8070#0 GCCTCCCCCGACCTGAGGAAGGGGACCGCTCCGCCGTGGTTCCTCTCCCCGTCGAACAGG 1140
consensus_8070#2 ------------------------------------------------------------
consensus_8070#1 ------------------------------------------------------------
consensus_8070#0 TTGACGACGACGGTAGCACCTGGACGCCGCGGAGGAAGTCGTGCAGCGCGGCGGCGGCAT 1200
consensus_8070#2 ------------------------------------------------------------
consensus_8070#1 -------------------------------------AGAGCGCGCGGCGAGTGCGAGCG 23
consensus_8070#0 CCCGCAGCGAGGCGGCGTAGGCGCGGTGTGCGTCGGCGAGCGCGTAGCGGTGGCGGATGG 1260
consensus_8070#2 --------------------------------------CCCACGTTGCAGCTGCCACCGC 22
consensus_8070#1 NCCGGCGAAGCGGACCGGAGGCGGGCAAGCGCGCGGCGGCTGGCGGATGGGGACGGTCGT 83
* * *
consensus_8070#0 CG-TCGGC-CAGCAGCGGGGCGCGGTCCCGGCACAGCGCGACGGCCGCGCCACCCCCATG 1318
consensus_8070#2 CTCTCCGC-CAGCGCGCTCGCCCGCCAACGCCGCCTCGCCCTACCGACGCC-CTCCCCTT 80
consensus_8070#1 CACTCGGCTCCGCGTCGTCGC-CACCGACGTCCCCGACCGCGTGCCCAGCCTCGCCGGCC 142
* ** ** * ** ** * ** * * * * *** * **
consensus_8070#0 CAGCAGCAGTTCCCCTTCCCCTCGCGGGCGTCGCCGCCGCATCGCCGGCTGTCCGTCGGG 1378
consensus_8070#2 CTCCCGTG--TCTCCGCCACCGCGTCGCCGCCGCCGCCACATCACCGGCCGGCTGTCGGA 138
consensus_8070#1 TCGACGCCGACCATCTCCCTCTCGACGTCGGCGACGA-GCGTGGAGTCCGGGTTGCCGCC 201
* * * * * ** * ** ** ** * * * * * **
consensus_8070#0 CCTCCTCGCCTCGGCGACCTCCTCCCCACCGCCGGC--TGGCCTGCCCGGAGAGAAGAGA 1436
consensus_8070#2 CCTCCTCGCCTCGGCGACCTCCTCCCCACCACCGGC--TGGCCTGCC-AGAGAGAAGAGT 195
consensus_8070#1 CCACGGAGGCGCAGCCGCCGTTGCCGCGGTGCGGGCGCCGAGCACGCTCGTCAGGCGAAG 261
** * * * * ** ** ** * * *** * * * * ** **
consensus_8070#0 GAAGAGAGAGAGAGGAGGAGGAAGGGAGAGGGGGAGAAGAGAACATGTTGACGTGGCGC- 1495
consensus_8070#2 GA-GTGAGAGAGAG-AGAGAGAGAGGAGGAAGGGACAGGCCGGCCTGCTGATGTGGCTTG 253
consensus_8070#1 CACGAACGTGGTCTTCCCGCACCCGGAGTCGGCAGCCAGCCCGATCACCACCGTCCCGC- 320
* * * * **** * * ** *
consensus_8070#0 CTAACATGGGGGTCC--CACGTGGGTCC-TACGCTGACTCAGCCAACACGTCAGATAAAA 1552
consensus_8070#2 CTGACGTGGCATTCTGACATATAAGGCC-CACACTGACTCAGTCGCCACGTCGGAT---- 308
consensus_8070#1 CTGACGCCGC-CGCCGCCACGGAGCACGACACAAAAGCGAGACCAAGGAGTAGGGAGAGC 379
** ** * * ** * ** * * ** *
consensus_8070#0 CCGCGACCAAAACCACCGAGGGACCTAAA---ACAAACAGTTTTGTTAGTTGAGGGACAT 1609
consensus_8070#2 ------------------------CTAGT---TTTTACTGGTTTATAAGTTAGGGGGTGT 341
consensus_8070#1 TTGCAGTGTGGTGTCTGTTCTTGCTTGATGAGTTGCTTTCCTCTCTTAGCTCGTTGTCAG 439
* * * * ** * *
consensus_8070#0 CCGGTATCTGGTTTTGCGATTGG-GGACGATTTTGTGTCTCGA--TAACAAGTTGAGGGA 1666
consensus_8070#2 GTTATATCTGGTTTTTCGGTTGGTGGATGATTTTGTAAAGGGA--TGACAAGTTGAGGGA 399
consensus_8070#1 CTCAGCCTCAGCTCAGCGACAAAGTATCGATCAAATGAGTTGAGCTAAGATATGCAGGAT 499
* * ** *** * ** * * * * ***
consensus_8070#0 -------------------
consensus_8070#2 CCTTCGGTGTACTTTTC-- 416
consensus_8070#1 GCTTAGCTAAAAAAAAAAA 518
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||