These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8070#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1666 fasta sequence [CCCTTCCTCATCTCTCTCTCTCTCCGGGGCTCTCTGGGCAGGGGAGCAAAGCGGCAGCGGCGGCGGGAGCAGGGGAGCAAGGCGGCAGCGGCGAGGGGAGCAAGGCGTCGGCGGCGGCGGCCTCCGATCTCCCCCACCCTCTTCGCTCTGGGCTGAGGCCGCCGTGCTCGCCCCGTCATCTTCGCTCTGCCCAAGGCGGCGGCGGGGGGAGCAAGACGTCGGCGGCGGCGGCCTCCGATCTCTCCCGCCCTCTTCGCTCTGGGCTGAGGCCGCCGTGCTAGGTGTGTGGGCATCGTTGTCGTGCAGGGCGTGCGGGCGTCGTCGTCGGGCAGGGCGTGCGGGCGTTGCTCTGGGAGGAGTAGCAATGGGCGGCGGGGAGCGGGGCTGAGCGGCAGCCGGCGGAGACGGCGTGCAAGCGCGCGGCGGCCGACGGAGCAGAGTGGCGGCGGGCGAGTGCGAGGCGGCCGGCGAAGCGGAGCGGAGGCGGGCAAGCACGCGGCGGCCGGCGGATGGGGAGCGGTCGTCACTCGGCTGCCGCGTCGTCGCCACCGACGTCCCCGACGGCGTGCCCAACCTCGCCGGCCTCGACGCCGACCATCTCCCTCTCGACGTCGGCGACGAGCGTGGAGTCCGGGTTGCAGCCCCACGGAGGCGCAAATGAGTTGAGCTAAGATATGCAGGATGCTTAGCTAGCTTGAGATGATTGAGACTGGATTTTCATGGGCTTTCTTTGTCCTGCATGCCTCCATGCCGATATCTAGCTAGAGACGCGCGCAGCAGGGGCGGCCGACCGGCCGGCGGAAGAGGAGAAATCTTGGCGGTGGACTGGTGGTTTTTGCGGGGTTGCAGAATTTGGTGGTCCTACGTGGTGGCGGCACGAGAGAGGCCGGCTGAAAACGGAGGGCGCGTACGCGTCGCGCAGCGCCGTGAACGGCTCCGGCGGCCGCGTCACGAGCGTGTCCAGGGCCGTGCGCACGGGCGCGCAAGGCGGCGTCGCTGACAGGGCCGACGCTTTCCCCTGTCGACTTCTACTACCTCCCCCGCCGCTCCTTCAGCTGGCCGCCCGCGCCGCGACGCTGCGCCTCCCCCGACCTGAGGAAGGGGACCGCTCCGCCGTGGTTCCTCTCCCCGTCGAACAGGTTGACGACGACGGTAGCACCTGGACGCCGCGGAGGAAGTCGTGCAGCGCGGCGGCGGCATCCCGCAGCGAGGCGGCGTAGGCGCGGTGTGCGTCGGCGAGCGCGTAGCGGTGGCGGATGGCGTCGGCCAGCAGCGGGGCGCGGTCCCGGCACAGCGCGACGGCCGCGCCACCCCCATGCAGCAGCAGTTCCCCTTCCCCTCGCGGGCGTCGCCGCCGCATCGCCGGCTGTCCGTCGGGCCTCCTCGCCTCGGCGACCTCCTCCCCACCGCCGGCTGGCCTGCCCGGAGAGAAGAGAGAAGAGAGAGAGAGGAGGAGGAAGGGAGAGGGGGAGAAGAGAACATGTTGACGTGGCGCCTAACATGGGGGTCCCACGTGGGTCCTACGCTGACTCAGCCAACACGTCAGATAAAACCGCGACCAAAACCACCGAGGGACCTAAAACAAACAGTTTTGTTAGTTGAGGGACATCCGGTATCTGGTTTTGCGATTGGGGACGATTTTGTGTCTCGATAACAAGTTGAGGGA] [+] EMBL AK119967 [CCCTTCCTCATCTCTCTCTCTCTCCGGGGCTCTCTGGGCAGGGGAGCAAAGCGGCAGCGGCGGCGGGAGCAGGGGAGCAAGGCGGCAGCGGCGAGGGGAGCAAGGCGTCGGCGGCGGCGGCCTCCGATCTCCCCCACCCTCTTCGCTCTGGGCTGAGGCCGCCGTGCTCGCCCCGTCATCTTCGCTCTGCCCAAGGCGGCGGCGGGGGGAGCAAGACGTCGGCGGCGGCGGCCTCCGATCTCTCCCGCCCTCTTCGCTCTGGGCTGAGGCCGCCGTGCTAGGTGTGTGGGCATCGTTGTCGTGCAGGGCGTGCGGGCGTCGTCGTCGGGCAGGGCGTGCGGGCGTTGCTCTGGGAGGAGTAGCAATGGGCGGCGGGGAGCGGGGCTGAGCGGCAGCCGGCGGAGACGGCGTGCAAGCGCGCGGCGGCCGACGGAGCAGAGTGGCGGCGGGCGAGTGCGAGGCGGCCGGCGAAGCGGAGCGGAGGCGGGCAAGCACGCGGCGGCCGGCGGATGGGGAGCGGTCGTCACTCGGCTGCCGCGTCGTCGCCACCGACGTCCCCGACGGCGTGCCCAACCTCGCCGGCCTCGACGCCGACCATCTCCCTCTCGACGTCGGCGACGAGCGTGGAGTCCGGGTTGCAGCCCCACGGAGGCGCAAATGAGTTGAGCTAAGATATGCAGGATGCTTAGCTAGCTTGAGATGATTGAGACTGGATTTTCATGGGCTTTCTTTGTCCTGCATGCCTCCATGCCGATATCTAGCTAGAGACGCGCGCAGCAGGGGCGGCCGACCGGCCGGCGGAAGAGGAGAAATCTTGGCGGTGGACTGGTGGTTTTTGCGGGGTTGCAGAATTTGGTGGTCCTACGTGGTGGCGGCACGAGAGAGGCCGGCTGAAAACGGAGGGCGCGTACGCGTCGCGCAGCGCCGTGAACGGCTCCGGCGGCCGCGTCACGAGCGTGTCCAGGGCCGTGCGCACGGGCGCGCAAGGCGGCGTCGCTGACAGGGCCGACGCTTTCCCCTGTCGACTTCTACTACCTCCCCCGCCGCTCCTTCAGCTGGCCGCCCGCGCCGCGACGCTGCGCCTCCCCCGACCTGAGGAAGGGGACCGCTCCGCCGTGGTTCCTCTCCCCGTCGAACAGGTTGACGACGACGGTAGCACCTGGACGCCGCGGAGGAAGTCGTGCAGCGCGGCGGCGGCATCCCGCAGCGAGGCGGCGTAGGCGCGGTGTGCGTCGGCGAGCGCGTAGCGGTGGCGGATGGCGTCGGCCAGCAGCGGGGCGCGGTCCCGGCACAGCGCGACGGCCGCGCCACCCCCATGCAGCAGCAGTTCCCCTTCCCCTCGCGGGCGTCGCCGCCGCATCGCCGGCTGTCCGTCGGGCCTCCTCGCCTCGGCGACCTCCTCCCCACCGCCGGCTGGCCTGCCCGGAGAGAAGAGAGAAGAGAGAGAGAGGAGGAGGAAGGGAGAGGGGGAGAAGAGAACATGTTGACGTGGCGCCTAACATGGGGGTCCCACGTGGGTCCTACGCTGACTCAGCCAACACGTCAGATAAAACCGCGACCAAAACCACCGAGGGACCTAAAACAAACAGTTTTGTTAGTTGAGGGACATCCGGTATCTGGTTTTGCGATTGGGGACGATTTTGTGTCTCGATAACAAGTTGAGGGA] [+] EMBL C74307 [ CCGGGGCTCTCTGGGCAGGGGANCAAAGCGNCA CGTCGGCGGGA NAGGGGAGCAAGGCNGCA NGGCGAGGGGAGCAAGGCGTCGGCGGCGGCNGCCTCCGATCTCCCCCACCCTCTTCGCTCTGGGCTGANGCCGCCGTGCTCNCCCCGTCATCTTCGCTCTGCCCAANGCGGCGGCGGGGGGAGCAAGACGTCGGCGGCGGCNGCCTCCGATCTCTCCCGCCCTCTTCGCTCTNGGCTGAGGC ] [+] EMBL AU108286 [ GAAGCGGAGCGGAGGCGGGCAAGCACGCGGCGGCCGGCGGATGGGGAGCGGTCGTCACTCGGCTGCCGCGTCGTCGCCACCGACGTCCCCGACGGCGTGCCCAACCTCGCCGGCCTCGACGCCGACCATCTCCCTCTCGACGTCGGCGACGAGCGTGGAGTCCGGGTTGCAGCCCCACGGAGGCGCAAATGAGTTGAGCTAAGATATGCAGGATGCTTAGCTAGCTTGAGATGATTGAGACTGGATTTTCAaaaaaa ] consensusID : consensus_8070#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 518 fasta sequence [AGAGCGCGCGGCGAGTGCGAGCGNCCGGCGAAGCGGACCGGAGGCGGGCAAGCGCGCGGCGGCTGGCGGATGGGGACGGTCGTCACTCGGCTCCGCGTCGTCGCCACCGACGTCCCCGACCGCGTGCCCAGCCTCGCCGGCCTCGACGCCGACCATCTCCCTCTCGACGTCGGCGACGAGCGTGGAGTCCGGGTTGCCGCCCCACGGAGGCGCAGCCGCCGTTGCCGCGGTGCGGGCGCCGAGCACGCTCGTCAGGCGAAGCACGAACGTGGTCTTCCCGCACCCGGAGTCGGCAGCCAGCCCGATCACCACCGTCCCGCCTGACGCCGCCGCCGCCACGGAGCACGACACAAAAGCGAGACCAAGGAGTAGGGAGAGCTTGCAGTGTGGTGTCTGTTCTTGCTTGATGAGTTGCTTTCCTCTCTTAGCTCGTTGTCAGCTCAGCCTCAGCTCAGCGACAAAGTATCGATCAAATGAGTTGAGCTAAGATATGCAGGATGCTTAGCTAAAAAAAAAAA] [+] EMBL BQ906873 [AGAGCGCGCGGCGAGTGCGAGCGNCCGGCGAAGCGGACCGGAGGCGGGCAAGCGCGCGGCGGCTGGCGGATGGGGACGGTCGTCACTCGGCTCCGCGTCGTCGCCACCGACGTCCCCGACCGCGTGCCCAGCCTCGCCGGCCTCGACGCCGACCATCTCCCTCTCGACGTCGGCGACGAGCGTGGAGTCCGGGTTGCCGCCCCACGGAGGCGCAGCCGCCGTTGCCGCGGTGCGGGCGCCGAGCACGCTCGTCAGGCGAAGCACGAACGTGGTCTTCCCGCACCCGGAGTCGGCAGCCAGCCCGATCACCACCGTCCCGCCTGACGCCGCCGCCGCCACGGAGCACGACACAAAAGCGAGACCAAGGAGTAGGGAGAGCTTGCAGTGTGGTGTCTGTTCTTGCTTGATGAGTTGCTTTCCTCTCTTAGCTCGTTGTCAGCTCAGCCTCAGCTCAGCGACAAAGTATCGATCAAATGAGTTGAGCTAAGATATGCAGGATGCTTAGCTAAAAAAAAAAA] consensusID : consensus_8070#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 416 fasta sequence [CCCACGTTGCAGCTGCCACCGCCTCTCCGCCAGCGCGCTCGCCCGCCAACGCCGCCTCGCCCTACCGACGCCCTCCCCTTCTCCCGTGTCTCCGCCACCGCGTCGCCGCCGCCGCCACATCACCGGCCGGCTGTCGGACCTCCTCGCCTCGGCGACCTCCTCCCCACCACCGGCTGGCCTGCCAGAGAGAAGAGTGAGTGAGAGAGAGAGAGAGAGAGGAGGAAGGGACAGGCCGGCCTGCTGATGTGGCTTGCTGACGTGGCATTCTGACATATAAGGCCCACACTGACTCAGTCGCCACGTCGGATCTAGTTTTTACTGGTTTATAAGTTAGGGGGTGTGTTATATCTGGTTTTTCGGTTGGTGGATGATTTTGTAAAGGGATGACAAGTTGAGGGACCTTCGGTGTACTTTTC] [-] EMBL CB666594 [CCCACGTTGCAGCTGCCACCGCCTCTCCGCCAGCGCGCTCGCCCGCCAACGCCGCCTCGCCCTACCGACGCCCTCCCCTTCTCCCGTGTCTCCGCCACCGCGTCGCCGCCGCCGCCACATCACCGGCCGGCTGTCGGACCTCCTCGCCTCGGCGACCTCCTCCCCACCACCGGCTGGCCTGCCAGAGAGAAGAGTGAGTGAGAGAGAGAGAGAGAGAGGAGGAAGGGACAGGCCGGCCTGCTGATGTGGCTTGCTGACGTGGCATTCTGACATATAAGGCCCACACTGACTCAGTCGCCACGTCGGATCTAGTTTTTACTGGTTTATAAGTTAGGGGGTGTGTTATATCTGGTTTTTCGGTTGGTGGATGATTTTGTAAAGGGATGACAAGTTGAGGGACCTTCGGTGTACTTTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8070#0 CCCTTCCTCATCTCTCTCTCTCTCCGGGGCTCTCTGGGCAGGGGAGCAAAGCGGCAGCGG 60 consensus_8070#2 ------------------------------------------------------------ consensus_8070#1 ------------------------------------------------------------ consensus_8070#0 CGGCGGGAGCAGGGGAGCAAGGCGGCAGCGGCGAGGGGAGCAAGGCGTCGGCGGCGGCGG 120 consensus_8070#2 ------------------------------------------------------------ consensus_8070#1 ------------------------------------------------------------ consensus_8070#0 CCTCCGATCTCCCCCACCCTCTTCGCTCTGGGCTGAGGCCGCCGTGCTCGCCCCGTCATC 180 consensus_8070#2 ------------------------------------------------------------ consensus_8070#1 ------------------------------------------------------------ consensus_8070#0 TTCGCTCTGCCCAAGGCGGCGGCGGGGGGAGCAAGACGTCGGCGGCGGCGGCCTCCGATC 240 consensus_8070#2 ------------------------------------------------------------ consensus_8070#1 ------------------------------------------------------------ consensus_8070#0 TCTCCCGCCCTCTTCGCTCTGGGCTGAGGCCGCCGTGCTAGGTGTGTGGGCATCGTTGTC 300 consensus_8070#2 ------------------------------------------------------------ consensus_8070#1 ------------------------------------------------------------ consensus_8070#0 GTGCAGGGCGTGCGGGCGTCGTCGTCGGGCAGGGCGTGCGGGCGTTGCTCTGGGAGGAGT 360 consensus_8070#2 ------------------------------------------------------------ consensus_8070#1 ------------------------------------------------------------ consensus_8070#0 AGCAATGGGCGGCGGGGAGCGGGGCTGAGCGGCAGCCGGCGGAGACGGCGTGCAAGCGCG 420 consensus_8070#2 ------------------------------------------------------------ consensus_8070#1 ------------------------------------------------------------ consensus_8070#0 CGGCGGCCGACGGAGCAGAGTGGCGGCGGGCGAGTGCGAGGCGGCCGGCGAAGCGGAGCG 480 consensus_8070#2 ------------------------------------------------------------ consensus_8070#1 ------------------------------------------------------------ consensus_8070#0 GAGGCGGGCAAGCACGCGGCGGCCGGCGGATGGGGAGCGGTCGTCACTCGGCTGCCGCGT 540 consensus_8070#2 ------------------------------------------------------------ consensus_8070#1 ------------------------------------------------------------ consensus_8070#0 CGTCGCCACCGACGTCCCCGACGGCGTGCCCAACCTCGCCGGCCTCGACGCCGACCATCT 600 consensus_8070#2 ------------------------------------------------------------ consensus_8070#1 ------------------------------------------------------------ consensus_8070#0 CCCTCTCGACGTCGGCGACGAGCGTGGAGTCCGGGTTGCAGCCCCACGGAGGCGCAAATG 660 consensus_8070#2 ------------------------------------------------------------ consensus_8070#1 ------------------------------------------------------------ consensus_8070#0 AGTTGAGCTAAGATATGCAGGATGCTTAGCTAGCTTGAGATGATTGAGACTGGATTTTCA 720 consensus_8070#2 ------------------------------------------------------------ consensus_8070#1 ------------------------------------------------------------ consensus_8070#0 TGGGCTTTCTTTGTCCTGCATGCCTCCATGCCGATATCTAGCTAGAGACGCGCGCAGCAG 780 consensus_8070#2 ------------------------------------------------------------ consensus_8070#1 ------------------------------------------------------------ consensus_8070#0 GGGCGGCCGACCGGCCGGCGGAAGAGGAGAAATCTTGGCGGTGGACTGGTGGTTTTTGCG 840 consensus_8070#2 ------------------------------------------------------------ consensus_8070#1 ------------------------------------------------------------ consensus_8070#0 GGGTTGCAGAATTTGGTGGTCCTACGTGGTGGCGGCACGAGAGAGGCCGGCTGAAAACGG 900 consensus_8070#2 ------------------------------------------------------------ consensus_8070#1 ------------------------------------------------------------ consensus_8070#0 AGGGCGCGTACGCGTCGCGCAGCGCCGTGAACGGCTCCGGCGGCCGCGTCACGAGCGTGT 960 consensus_8070#2 ------------------------------------------------------------ consensus_8070#1 ------------------------------------------------------------ consensus_8070#0 CCAGGGCCGTGCGCACGGGCGCGCAAGGCGGCGTCGCTGACAGGGCCGACGCTTTCCCCT 1020 consensus_8070#2 ------------------------------------------------------------ consensus_8070#1 ------------------------------------------------------------ consensus_8070#0 GTCGACTTCTACTACCTCCCCCGCCGCTCCTTCAGCTGGCCGCCCGCGCCGCGACGCTGC 1080 consensus_8070#2 ------------------------------------------------------------ consensus_8070#1 ------------------------------------------------------------ consensus_8070#0 GCCTCCCCCGACCTGAGGAAGGGGACCGCTCCGCCGTGGTTCCTCTCCCCGTCGAACAGG 1140 consensus_8070#2 ------------------------------------------------------------ consensus_8070#1 ------------------------------------------------------------ consensus_8070#0 TTGACGACGACGGTAGCACCTGGACGCCGCGGAGGAAGTCGTGCAGCGCGGCGGCGGCAT 1200 consensus_8070#2 ------------------------------------------------------------ consensus_8070#1 -------------------------------------AGAGCGCGCGGCGAGTGCGAGCG 23 consensus_8070#0 CCCGCAGCGAGGCGGCGTAGGCGCGGTGTGCGTCGGCGAGCGCGTAGCGGTGGCGGATGG 1260 consensus_8070#2 --------------------------------------CCCACGTTGCAGCTGCCACCGC 22 consensus_8070#1 NCCGGCGAAGCGGACCGGAGGCGGGCAAGCGCGCGGCGGCTGGCGGATGGGGACGGTCGT 83 * * * consensus_8070#0 CG-TCGGC-CAGCAGCGGGGCGCGGTCCCGGCACAGCGCGACGGCCGCGCCACCCCCATG 1318 consensus_8070#2 CTCTCCGC-CAGCGCGCTCGCCCGCCAACGCCGCCTCGCCCTACCGACGCC-CTCCCCTT 80 consensus_8070#1 CACTCGGCTCCGCGTCGTCGC-CACCGACGTCCCCGACCGCGTGCCCAGCCTCGCCGGCC 142 * ** ** * ** ** * ** * * * * *** * ** consensus_8070#0 CAGCAGCAGTTCCCCTTCCCCTCGCGGGCGTCGCCGCCGCATCGCCGGCTGTCCGTCGGG 1378 consensus_8070#2 CTCCCGTG--TCTCCGCCACCGCGTCGCCGCCGCCGCCACATCACCGGCCGGCTGTCGGA 138 consensus_8070#1 TCGACGCCGACCATCTCCCTCTCGACGTCGGCGACGA-GCGTGGAGTCCGGGTTGCCGCC 201 * * * * * ** * ** ** ** * * * * * ** consensus_8070#0 CCTCCTCGCCTCGGCGACCTCCTCCCCACCGCCGGC--TGGCCTGCCCGGAGAGAAGAGA 1436 consensus_8070#2 CCTCCTCGCCTCGGCGACCTCCTCCCCACCACCGGC--TGGCCTGCC-AGAGAGAAGAGT 195 consensus_8070#1 CCACGGAGGCGCAGCCGCCGTTGCCGCGGTGCGGGCGCCGAGCACGCTCGTCAGGCGAAG 261 ** * * * * ** ** ** * * *** * * * * ** ** consensus_8070#0 GAAGAGAGAGAGAGGAGGAGGAAGGGAGAGGGGGAGAAGAGAACATGTTGACGTGGCGC- 1495 consensus_8070#2 GA-GTGAGAGAGAG-AGAGAGAGAGGAGGAAGGGACAGGCCGGCCTGCTGATGTGGCTTG 253 consensus_8070#1 CACGAACGTGGTCTTCCCGCACCCGGAGTCGGCAGCCAGCCCGATCACCACCGTCCCGC- 320 * * * * **** * * ** * consensus_8070#0 CTAACATGGGGGTCC--CACGTGGGTCC-TACGCTGACTCAGCCAACACGTCAGATAAAA 1552 consensus_8070#2 CTGACGTGGCATTCTGACATATAAGGCC-CACACTGACTCAGTCGCCACGTCGGAT---- 308 consensus_8070#1 CTGACGCCGC-CGCCGCCACGGAGCACGACACAAAAGCGAGACCAAGGAGTAGGGAGAGC 379 ** ** * * ** * ** * * ** * consensus_8070#0 CCGCGACCAAAACCACCGAGGGACCTAAA---ACAAACAGTTTTGTTAGTTGAGGGACAT 1609 consensus_8070#2 ------------------------CTAGT---TTTTACTGGTTTATAAGTTAGGGGGTGT 341 consensus_8070#1 TTGCAGTGTGGTGTCTGTTCTTGCTTGATGAGTTGCTTTCCTCTCTTAGCTCGTTGTCAG 439 * * * * ** * * consensus_8070#0 CCGGTATCTGGTTTTGCGATTGG-GGACGATTTTGTGTCTCGA--TAACAAGTTGAGGGA 1666 consensus_8070#2 GTTATATCTGGTTTTTCGGTTGGTGGATGATTTTGTAAAGGGA--TGACAAGTTGAGGGA 399 consensus_8070#1 CTCAGCCTCAGCTCAGCGACAAAGTATCGATCAAATGAGTTGAGCTAAGATATGCAGGAT 499 * * ** *** * ** * * * * *** consensus_8070#0 ------------------- consensus_8070#2 CCTTCGGTGTACTTTTC-- 416 consensus_8070#1 GCTTAGCTAAAAAAAAAAA 518 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||