These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8246#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 715 fasta sequence [AGAGCCCCTTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCTCGAGTCGCATTCTGCTCGATGCTCCTCCTTTTCCTCTTTCTCCTCTACGAGCGCCGCCCGGCGGAGGGCCTGGTGGCCGGCGGCGTGCCGGCGCGGCGGCGCGGCGCTAGGCGATGCGGCAGCACAGCGGCCTGGGCAGCCTCTTGGGCGGGGGGCCGCGCGCGGCGGCGGCGGCCGGCGGGGCCGCGCCCCGCGGCGACGGGCAGGCGGCCGGCGGGGCCACGCCTCCCGGCGGCGGCGCCCCGCGGCGGCGGGCAGGCGGCCGACGGCCGGTTGGGCCACGCCCGGCGGCAGCGAGCGGCCGTTTTTTTTTATAATCTGTGATTATTGAGATGTATAATTTTGTGATTCATTGGACATTTGTATAGATCTGAGATGTATAATCTGTGATGTATTTTGTATTGTTTAGGATTTGGGATGTATTTGATTTGTGTGTATGAGTAACTTTAAGATTTGTGATGTGGAGTTGAGATGTTATTTGATTTGGGGATTTGGGGATGTGCATGGCGCTCGATTCGGGAGAAAATAAAAAGAAAATCTCTAAAAAGGGAA] [+] EMBL CB681429 [AGAGCCCCTTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCTCGAGTCGCATTCTGCTCGATGCTCCTCCTTTTCCTCTTTCTCCTCTACCAGCGCCTCCCGGCGGAGGGGCTGGGGGCCGGCGGCGTGCCGGCGCGGGGGCGCGGCGCTAGGGGATGCGGCACCGCAGGGGCCTGGGCAGCCTCTTGGGCGGGGGGCCGCGCGCGGCGGGGGCGGCCGGCGGGGCCGCGCCCCGCGGCGACGGGCACGCGGCCGGCGGGGCCACGCCTCCCGGCGGCGGCGCCCCGCGGCGGCGGGCAGGCGGGCGACGGCCGGTTGGGCCACGCCCGGCGGCAGCGAGCGGCCGTTTTTTTTTATAATCTGTGATTATTGAGATGTATCATTTTGTGATTCATTGGACATTTGTATAGATCTGAGATGTATAATCTGTGATGTATTTTGTATTGTTTAGGATTTGGGATGTATTTGATTTGTGTGTATGAGTAACTTTAAGATTTGTG ] [-] EMBL CB681430 [ CCTCCTTTTCCTCTTTCTCCTCTACGAGCGCCGACGGGCGGAGGGCCTGGTGGCCGGCGGCGTGCCGGCGCGGCGGCGCGGCGCTAGGCGATGCGGCAGCACAGCGGCCTGGGCAGCCTCTTGGGCGGGGGGCCGCGCGCGGCGGCGGCGGCCGGCGGGGCCGCGCCCCGCGGCGACGGGCAGGCGGCCGGCGGGGCCACGCCTCCCGGCGGCGGCGCCCCGCGGCGGCGGGCAGGCGGCCGACGGCCGGTTGGGCCACGCCCGGCGGCAGCGAGCGGCCGTTTTTTTTTATAATCTGTGATTATTGAGATGTATAATTTTGTGATTCATTGGACATTTGTATAGATCTGAGATGTATAATCTGTGATGTATTTTGTATTGTTTAGGATTTGGGATGTATTTGATTTGTGTGTATGAGTAACTTTAAGATTTGTGATGTGGAGTTGAGATGTTATTTGATTTGGGGATTTGGGGATGTGCATGGCGCTCGATTCGGGAGAAAATAAAAAGAAAATCTCTAAAAAGGGAA] [+] EMBL CB660178 [ gCCTCCTTTTCCTCTTTCTCCTCTACGAGCGCCGCCTTGAGGAGGGCCTGGTGGCCGGCGGCGTGCCGGCGCGGCGGCGCGGAGCTAGGCGATGCGGCAGCACAGCGGCCTGGGCAGCCTCTTGGGCGGGGGGCCGCGCGCGGCGGCGGCGGCCGGCGGGGCCGCGCCCCGCGGCGACGGGCAGGCGGCCGGCGGGGCCACGCCTCCCGGCGGCGGCGCCCCGCGGCGGCGGGCAGGCGGCCGACGGCCGGTTGGGCCACGCCCGGCGGCAGCGAGCGGCCGTTTTTTTTTATAATCTGTGATTATTGAGATGTATAATTTTGTGATTCATTGGACATTTGTATAGATCTGAGATGTATAATCTGTGATGTATTTTGCATTGTTTAGGATTTGGGATGTATTTGATTTGCGTGTATGAGTAACTTTAAGATTTGTGATGCGGAGTTGAGATGTTATTTGA ] consensusID : consensus_8246#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 405 fasta sequence [GTATTTGATTTGTGTGTATGAGTAACTTTAAGATTTGTGATGTGGAGTTGAGATGTTATTTGATTTGGGGATTTGGGGATGTGCATGCCACTCGATTCGGGAGAAAATAAAAAGAAAATAAAAGAAAAGAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTGTTTTCCCGTTCCTTACCAAGGGGCAATTTCTTTAAACCCTGCGGGATTATCCCTTTTAGGGGGGGTTAATTTTAACCTGGGGGAAATCAGGGCCATACCTGTTCCCTGGGGAAAATGGTTTTCCGTTCACATTTCCCCACAAATTACAACCCGAAACCTTAAAGGGTAAACCCGGGGGGGCCTAAGGAGGGACCTACCT] [+] EMBL CF300957 [GTATTTGATTTGTGTGTATGAGTAACTTTAAGATTTGTGATGTGGAGTTGAGATGTTATTTGATTTGGGGATTTGGGGATGTGCATGCCACTCGATTCGGGAGAAAATAAAAAGAAAATAAAAGAAAAGAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTGTTTTCCCGTTCCTTACCAAGGGGCAATTTCTTTAAACCCTGCGGGATTATCCCTTTTAGGGGGGGTTAATTTTAACCTGGGGGAAATCAGGGCCATACCTGTTCCCTGGGGAAAATGGTTTTCCGTTCACATTTCCCCACAAATTACAACCCGAAACCTTAAAGGGTAAACCCGGGGGGGCCTAAGGAGGGACCTACCT] consensusID : consensus_8246#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 298 fasta sequence [CCGGCGGGGCCGCGCCCCGCGGCGACGGGCAGGCGGCCGGCGGGGCCNCGCCTNCCGGCGGCGGCGCCCCCCGGCGGCGGGCAGGCGGCCGACGGCCGGTTGGGCCACGCCCGGCGGCANCGANCGGCCGTTTTTTTTTATAATCTGTGATTATTNAGATGTATAATTTTGTGATTCNTTGGACATTTGTATAGATCTGAGATGTATAATCTGTGATGTATTTTGTATTGTTTAGGATTTGGGATGTATTTGATTTGTGTGTATGAGTAACTTTAAGATTTGTNAAAAAAAAAAAAAA] [+] EMBL AU173843 [CCGGCGGGGCCGCGCCCCGCGGCGACGGGCAGGCGGCCGGCGGGGCCNCGCCTNCCGGCGGCGGCGCCCCCCGGCGGCGGGCAGGCGGCCGACGGCCGGTTGGGCCACGCCCGGCGGCANCGANCGGCCGTTTTTTTTTATAATCTGTGATTATTNAGATGTATAATTTTGTGATTCNTTGGACATTTGTATAGATCTGAGATGTATAATCTGTGATGTATTTTGTATTGTTTAGGATTTGGGATGTATTTGATTTGTGTGTATGAGTAACTTTAAGATTTGTNAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8246#0 AGAGCCCCTTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA 60 consensus_8246#2 ------------------------------------------------------------ consensus_8246#1 ------------------------------------------------------------ consensus_8246#0 GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA 120 consensus_8246#2 ------------------------------------------------------------ consensus_8246#1 ------------------------------------------------------------ consensus_8246#0 GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCTCGAGTCGCATTCTGCTC 180 consensus_8246#2 ------------------------------------------------------------ consensus_8246#1 ------------------------------------------------------------ consensus_8246#0 GATGCTCCTCCTTTTCCTCTTTCTCCTCTACGAGCGCCGCCCGGCGGAGGGCCTGGTGGC 240 consensus_8246#2 ------------------------------------------------------------ consensus_8246#1 ------------------------------------------------------------ consensus_8246#0 CGGCGGCGTGCCGGCGCGGCGGCGCGGCGCTAGGCGATGCGGCAGCACAGCGGCCTGGGC 300 consensus_8246#2 ------------------------------------------------------------ consensus_8246#1 -------------------------GTATTTGATTTGTGTGTATGAGTAACTTTAAGATT 35 consensus_8246#0 AGCCTCTTGGGCGGGGGGCCGCGCGCGGCGGCGGCGGCCGGCGGGGC-CGCGCCCCGCGG 359 consensus_8246#2 -------------------------------------CCGGCGGGGC-CGCGCCCCGCGG 22 consensus_8246#1 TGTGATGTGGAGTTGAGATGTTATTTGATTTGGGGATTTGGGGATGTGCATGCCACTCGA 95 ** * * * *** * ** consensus_8246#0 CGACGGGCAGGCGGCCGGCGGGGCCACGCCTCCCGGCGGCGGCGCCCCGCGGCGGCGGGC 419 consensus_8246#2 CGACGGGCAGGCGGCCGGCGGGGCCNCGCCTNCCGGCGGCGGCGCCCCCCGGCGGCGGGC 82 consensus_8246#1 TT-CGGGAGAAAATAAAAAGAAAATAAAAGAAAAGAAAGAAAAAAAAAAAAAAAAAAAAA 154 **** * * * consensus_8246#0 AGGCGGCCGACGGCCGGTTGGGCCACGCCCGGCGGCAGCGAGCGGCCGTTTTTTTTTATA 479 consensus_8246#2 AGGCGGCCGACGGCCGGTTGGGCCACGCCCGGCGGCANCGANCGGCCGTTTTTTTTTATA 142 consensus_8246#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTGTTTTCCCG 214 * * * * * * ** **** consensus_8246#0 ATCTGTGATTATTGAGATGTATAATTTTGTGATTCATTGGA--CATTTGTATAGATCTGA 537 consensus_8246#2 ATCTGTGATTATTNAGATGTATAATTTTGTGATTCNTTGGA--CATTTGTATAGATCTGA 200 consensus_8246#1 TTCC----TTACCAAGGGGCAATTTCTTTAAACCCTGCGGGATTATCCCTTTTAGGGGGG 270 ** *** ** * * * ** * * ** ** * * * consensus_8246#0 GATG--TATAATCTGTGATGTATTTTGTATTGTTTAGGATTTGGGATGTATTTGATTTGT 595 consensus_8246#2 GATG--TATAATCTGTGATGTATTTTGTATTGTTTAGGATTTGGGATGTATTTGATTTGT 258 consensus_8246#1 GTTAATTTTAACCTG-GGGGAAATCAGGGCCATACCTGTTCCCTGGGGAAAATGGTTT-T 328 * * * *** *** * * * * * * * * * * * ** *** * consensus_8246#0 GTGTATGAGTAACTTTAAGATTTGTGATGTGGAGTTGAGATGTTATTTGATTTGGGGATT 655 consensus_8246#2 GTGTATGAGTAACTTTAAGATTTGTNAAAAAAAAAAAAAA-------------------- 298 consensus_8246#1 CCGTTCACATTTCCCCACAAATTACAACCCGAAACCTTAAAGGGTAAACCCGGGGGGGCC 388 ** * * * * ** * * * consensus_8246#0 TGGGGATGTGCATGGCGCTCGATTCGGGAGAAAATAAAAAGAAAATCTCTAAAAAGGGAA 715 consensus_8246#2 ------------------------------------------------------------ consensus_8246#1 TAAGGAGGGACCTACCT------------------------------------------- 405 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||