cluster # 8399

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Oryza sativa
cluster # 8399 cluster # 8399 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8399#0 length = 849 sequences # 2

consensus_8399#1 length = 331 sequences # 1
consensus_8399#2 length = 241 sequences # 2

consensusID : consensus_8399#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 849
fasta sequence

                              [TTCGCCTGGTTGCATCTGCTTCCTCTTCTTGTTCGCTCGTCTCGGGTTGATCTGCGATTTCAGATCTTGTTCTTTCCGTTTGGTTTTTCCTTTGCCAGGTATTTTGCAATGGTTAATTTACTTTTTCGTTGTTCGAGTGGGGGATTTGATTTGTGTTTTTGGTGTCGAGGACGGTGAAGATCGTATCTATTGGTCTCGTTCGTCGTAACTGGCAAATTGTTTTTGCCTTGCCGACCATCCTGATATATCACCACCCATATTCCGAGTCCTCTGTAACCAAATCAATTTTCGATTCCTCATGAGATCAGATCTTCTTTGGTGATTTTCTTTCGTTTGGCTCTTCTTTTGGATTCATTGTGCAGTTATATTGGCCGATGATTAGATTAAAATATAGACAAGCATATGTCTGAATTTTCATGTGGAAAAGCCTAATCTTCTCTATGAGGTCAGATTTATTGATGCATGTCATTGTGTTGTATTTTTCGTCATCTTTATCCTTTTCGTTTACTTTTGAGGCCTATGATGATCAATGTGGAAACCTTTCTCTCTGAAATCTTGTGAGGACATACCCTACTACTGCCTTCCTTCTGAGGTCTCTTATCATTGTTTGGATCTGACTAAAAATCTTATTTTGATTTTTGATATGGTTTTAAAAACTATGATTTTTTAAGAGGTTTGATGCCGATGTGGATGTAAATTGGTTGCAAGGTCGAGTGATGAGCAAAAATGCATAGTTCAGATGATCAAACCCTAGTGGTTATGATTACTTTGAATAAATAGTCTTTCGCTCCTAACTGACGGCCTTTACGCACCCATCTCAAAAACGGTTACTAAAGATTTATTTATTTT]

[+] EMBL CB649568             [TTCGCCTGGTTGCATCTGCTTCCTCTTCTTGTTCGCTCGTCTCGGGTTGATCTGCGATTTCAGATCTTGTTCTTTCCGTTTGGTTTTTCCTTTGCCAGGTATTTTGCAATGGTTAATTTACTTTTTCGTTGTTCGAGTGGGGGATTTGATTTGTGTTTTTGGTGTCGAGGACGGTGAAGATCGTATCTATTGGTCTCGTTCGTCGTAACTGGCAAATTGTTTTTGCCTTGCCGACCATCCTGATATATCACCACCCATATTCCGAGTCCTCTGTAACCAAATCAATTTTCGATTCCTCATGAGATCAGATCTTCTTTGGTGATTTTCTTTCGTTTGGCTCTTCTTTTGGATTCATTGTGCAGTTATATTGGCCGATGATTAGATTAAAATATAGACAAGCATATGTCTGAATTTTCATGTGGAAAAGCCTAATCTTCTCTATGAGGTCAGATTTATTGATGCATGTCATTGTGTTGTATTTTTCGTCATCTTTATCCTTTTCGTTTACTTTTGAGGCCTATGATGATCAATGTGGAAACCTTTCTCTCTGAAATCTTGTGAGGACATACCCTACTACTGCCTTCCTTCTGAGGTCTCTTATCATTGTTTGGATCTGACTAAAAATCTTATTTTGATTTTTGATATGGTTTTAAAAACTATGATTTTTTAAGAGGTTTGATGCCGATGTGGATGTAAATTGGTTGCAAGGTCGAGTGATGAGCAAAAATGCATAGTTCAGATGATCAAACCCTAGTGGTTATGATTACTTTGAATAAATAGTCTTTCGCTCCTAACTGACGGCCTTTACGCACCCATCTCAAAAACGGTTACTAAAGATTTATTTATTTT]
[+] EMBL CB651064             [TTCGCATGGTTGCATCTGCTTCCTCTTCTTGTTCGCTCGTCTCGGGTTGATCTGCGATTTCAGATCTTGTTCTTTCCGTTTGGTTTTTCCTTTGCCAGGTATTTTGCAATGGTTAATTTACTTTTTCGTTGTTCGAGTGGGGGATTTGATTTGTGTTTTTGGTGTCGAGGACGGTGAAGATCGTATCTATTGGTCTCGTTCGTCGTAACTGGCAAATTGTTTTTGCCTTGCCGACCATCCTGATATATCACCACCCATATTCCGAGTCCTCTGTAACCAAATCAATTTTCGATTCCTCATGAGATCAGATCTTCTTTGGTGATTTTCTTTCGTTTGGCTCTTCTTTTGGATTCATTGTGCAGTTATATTGGCCGATGATTAGATTAAAATATAGACAAGCATATGTCTGAATTTTCATGTGGAAAAGCCTAATCTTCTCTATGAGGTCAGATTTATTGATGCATGTCATTGTGTTGTATTTTTCGTCATCTTTATCCTTTTCGTTTACTTTTGAGGCCTATGATGATCAATGTGGAAACCTTTCTCTCTGAAATCTTGTGAGGACATACCCTACTACTGCCTTCCTTCTGAGGTCTCTTATCATTGTTTGGATCTGACTAAAAATCTTATTTTGATTTTTGATATGGTTTTAAAAACTATGATTTTTTAAGAGGTTTGATGCCGATGTGGATGTAAATTGGTTGCAAGGTCGAGTGATGAGCAAAAATGCATAGTTCAGATGATCAAACCCTAGTGGTTATGATTACTTTGAATAAATAGTCTTTCGCTCCTA                                                        ]




>consensus_8399#0
TTCGCCTGGTTGCATCTGCTTCCTCTTCTTGTTCGCTCGTCTCGGGTTGATCTGCGATTT
CAGATCTTGTTCTTTCCGTTTGGTTTTTCCTTTGCCAGGTATTTTGCAATGGTTAATTTA
CTTTTTCGTTGTTCGAGTGGGGGATTTGATTTGTGTTTTTGGTGTCGAGGACGGTGAAGA
TCGTATCTATTGGTCTCGTTCGTCGTAACTGGCAAATTGTTTTTGCCTTGCCGACCATCC
TGATATATCACCACCCATATTCCGAGTCCTCTGTAACCAAATCAATTTTCGATTCCTCAT
GAGATCAGATCTTCTTTGGTGATTTTCTTTCGTTTGGCTCTTCTTTTGGATTCATTGTGC
AGTTATATTGGCCGATGATTAGATTAAAATATAGACAAGCATATGTCTGAATTTTCATGT
GGAAAAGCCTAATCTTCTCTATGAGGTCAGATTTATTGATGCATGTCATTGTGTTGTATT
TTTCGTCATCTTTATCCTTTTCGTTTACTTTTGAGGCCTATGATGATCAATGTGGAAACC
TTTCTCTCTGAAATCTTGTGAGGACATACCCTACTACTGCCTTCCTTCTGAGGTCTCTTA
TCATTGTTTGGATCTGACTAAAAATCTTATTTTGATTTTTGATATGGTTTTAAAAACTAT
GATTTTTTAAGAGGTTTGATGCCGATGTGGATGTAAATTGGTTGCAAGGTCGAGTGATGA
GCAAAAATGCATAGTTCAGATGATCAAACCCTAGTGGTTATGATTACTTTGAATAAATAG
TCTTTCGCTCCTAACTGACGGCCTTTACGCACCCATCTCAAAAACGGTTACTAAAGATTT
ATTTATTTT

consensusID : consensus_8399#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 331
fasta sequence

                              [ACGCCGCTATCTACCTTCTTTCGCATGGTTGCATCTGCTTCCTCTTCTTGTTCGCTCGTCTCGGGTTGATCTGCGATTTCAGATCTTGTTCTTTCCGTTTGGTTTTTCCTTTGCCAGGATCTAAATGCAGACTGGANGTGGATTGAAAATTGCGGCTGAAGAACGTGAACATTGAATGCAGACTGCTACATTCGCACTGTTTTGTATCAGTCCGTTAATTCTACAATATTTAGCTGTTTAGTAATTAAACAATGGTCCTGTCATCTTTTGTAACCTGTTAAGATTGATATTGAATAAATCATATTTGCGTAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF298404             [ACGCCGCTATCTACCTTCTTTCGCATGGTTGCATCTGCTTCCTCTTCTTGTTCGCTCGTCTCGGGTTGATCTGCGATTTCAGATCTTGTTCTTTCCGTTTGGTTTTTCCTTTGCCAGGATCTAAATGCAGACTGGANGTGGATTGAAAATTGCGGCTGAAGAACGTGAACATTGAATGCAGACTGCTACATTCGCACTGTTTTGTATCAGTCCGTTAATTCTACAATATTTAGCTGTTTAGTAATTAAACAATGGTCCTGTCATCTTTTGTAACCTGTTAAGATTGATATTGAATAAATCATATTTGCGTAAAAAAAAAAAAAAAAAAAAA]




>consensus_8399#1
ACGCCGCTATCTACCTTCTTTCGCATGGTTGCATCTGCTTCCTCTTCTTGTTCGCTCGTC
TCGGGTTGATCTGCGATTTCAGATCTTGTTCTTTCCGTTTGGTTTTTCCTTTGCCAGGAT
CTAAATGCAGACTGGANGTGGATTGAAAATTGCGGCTGAAGAACGTGAACATTGAATGCA
GACTGCTACATTCGCACTGTTTTGTATCAGTCCGTTAATTCTACAATATTTAGCTGTTTA
GTAATTAAACAATGGTCCTGTCATCTTTTGTAACCTGTTAAGATTGATATTGAATAAATC
ATATTTGCGTAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_8399#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 241
fasta sequence

                              [CTTAACAGGTTACAAAAGATGACAGGACCATTGTTTAATTACTAAACAGCTAAATATTGTAGAATTAACGGACTGATACAAAACAGTGCGAATGTAGCAGTCTGCATTCAATGTTCACGTTCTTCAGCCGCAATTTTCAATCCACAATCCAGTCTGCATTTAGATCCTGAAATTGAGAAAAAGTTTGACAGTTGGTAGTTTGAAAAAAAATTAAAGTTTATGTGATTGTGATGTGATGAAA]

[+] EMBL CB651065             [CTTAACAGGTTACAAAAGATGACAGGACCATTGTTTAATTACTAAACAGCTAAATATTGTAGAATTAACGGACTGATACAAAACAGTGCGAATGTAGCAGTCTGCATTCAATGTTCACGTTCTTCAGCCGCAATTTTCAATCCACAATCCAGTCTGCATTTAGATCCTGAAATTGAGAAAAAGTTTGACAGTTGGTAGTTTGAAAAAAAATTAAAGTTTATGTGATTGTGATGTGATGAAA]
[+] EMBL CB649569             [CTTAACAGGTTACAAAAGATGACAGGACCATTGTTTAATTACTAAACAGCTAAATATTGTAGAATTAACGGACTGATACAAAACAGTGCGAATGTAGCAGTCTGCATTCAATGTTCACGTTCTTCAGCCGCAATTTTCAATCCACAATCCAGTCTGCATTTAGATCCTGAAATTGAGAAAAAGTTTGACAGTTGGTAGTTTGAAAAAAAATTAGAGTTTATGTGATTG             ]




>consensus_8399#2
CTTAACAGGTTACAAAAGATGACAGGACCATTGTTTAATTACTAAACAGCTAAATATTGT
AGAATTAACGGACTGATACAAAACAGTGCGAATGTAGCAGTCTGCATTCAATGTTCACGT
TCTTCAGCCGCAATTTTCAATCCACAATCCAGTCTGCATTTAGATCCTGAAATTGAGAAA
AAGTTTGACAGTTGGTAGTTTGAAAAAAAATTAAAGTTTATGTGATTGTGATGTGATGAA
A

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8399#0      -------------------TTCGCCTGGTTGCATCTGCTTCCTCTTCTTGTTCGCTCGTC 41
consensus_8399#1      ACGCCGCTATCTACCTTCTTTCGCATGGTTGCATCTGCTTCCTCTTCTTGTTCGCTCGTC 60
consensus_8399#2      ------------------------------------------------------------
                                                                                  

consensus_8399#0      TCGGGTTGATCTGCGATTTCAGATCTTGTTCTTTCCGTTTGGTTTTTCCTTTGCCAGGTA 101
consensus_8399#1      TCGGGTTGATCTGCGATTTCAGATCTTGTTCTTTCCGTTTGGTTTTTCCTTTGCCAGGAT 120
consensus_8399#2      ----CTTAACAGGTTACAAAAGATGACAGGACCATTGTTTAATTACTAAACAGCTAAATA 56
                           ** *   *  *    ****            ****  **  *     ** *    

consensus_8399#0      TTTTGCAATGGTTAATTTACTTTTTCGTTGTTCGAGTGGGGGATTTGATTTGTGTTTTTG 161
consensus_8399#1      CTAAATGCAGACTGGANGTGGATTGAAAATTGCGGCTGAAGAACGTGAACATTGAA--TG 178
consensus_8399#2      TTGTAGAATTAACGGACTGATACAAAACAGTGCGAATGTAGCAGTCTGCATTCAATGTTC 116
                       *                            * **  **  * *               * 

consensus_8399#0      GTGTCGAGGACGGTGAAGATCGTATCTATTGGTCTCGTTCGTCGTA-ACTGGCAAATTGT 220
consensus_8399#1      CAGACTGCTACATTCGCACTGTTTTGTATCAGTC-CGTTAATTCTACAATATTTAGCTGT 237
consensus_8399#2      ACGTTCTTCAGCCGCAATTTTCAATCCACAATCCAGTCTGCATTTAGATCCTGAAATTGA 176
                        *      *         *    *  *     *    *     ** *      *  ** 

consensus_8399#0      TTT-TGCCTTGCCGACCATC---CTGATATATCACCACCCATATTCCGAGTCCTCTGTAA 276
consensus_8399#1      TTAGTAATTAAACAATGGTC---CTGTCATCTTTTGTAACCTGTTAAGATTGATAT-TGA 293
consensus_8399#2      GAAAAAGTTTGACAGTTGGTAGTTTGAAAAAAAATTAAAGTTTATGTGATTGTGATGTGA 236
                              *   *           **  *            *  *  ** *    * * *

consensus_8399#0      CCAAATCAATTTTCGATTCCTCATGAGATCAGATCTTCTTTGGTGATTTTCTTTCGTTTG 336
consensus_8399#1      ATAAATCATATTTGCGTAAAAAAAAAAAAAAAAAAAAA---------------------- 331
consensus_8399#2      TGAAA------------------------------------------------------- 241
                        ***                                                       

consensus_8399#0      GCTCTTCTTTTGGATTCATTGTGCAGTTATATTGGCCGATGATTAGATTAAAATATAGAC 396
consensus_8399#1      ------------------------------------------------------------
consensus_8399#2      ------------------------------------------------------------
                                                                                  

consensus_8399#0      AAGCATATGTCTGAATTTTCATGTGGAAAAGCCTAATCTTCTCTATGAGGTCAGATTTAT 456
consensus_8399#1      ------------------------------------------------------------
consensus_8399#2      ------------------------------------------------------------
                                                                                  

consensus_8399#0      TGATGCATGTCATTGTGTTGTATTTTTCGTCATCTTTATCCTTTTCGTTTACTTTTGAGG 516
consensus_8399#1      ------------------------------------------------------------
consensus_8399#2      ------------------------------------------------------------
                                                                                  

consensus_8399#0      CCTATGATGATCAATGTGGAAACCTTTCTCTCTGAAATCTTGTGAGGACATACCCTACTA 576
consensus_8399#1      ------------------------------------------------------------
consensus_8399#2      ------------------------------------------------------------
                                                                                  

consensus_8399#0      CTGCCTTCCTTCTGAGGTCTCTTATCATTGTTTGGATCTGACTAAAAATCTTATTTTGAT 636
consensus_8399#1      ------------------------------------------------------------
consensus_8399#2      ------------------------------------------------------------
                                                                                  

consensus_8399#0      TTTTGATATGGTTTTAAAAACTATGATTTTTTAAGAGGTTTGATGCCGATGTGGATGTAA 696
consensus_8399#1      ------------------------------------------------------------
consensus_8399#2      ------------------------------------------------------------
                                                                                  

consensus_8399#0      ATTGGTTGCAAGGTCGAGTGATGAGCAAAAATGCATAGTTCAGATGATCAAACCCTAGTG 756
consensus_8399#1      ------------------------------------------------------------
consensus_8399#2      ------------------------------------------------------------
                                                                                  

consensus_8399#0      GTTATGATTACTTTGAATAAATAGTCTTTCGCTCCTAACTGACGGCCTTTACGCACCCAT 816
consensus_8399#1      ------------------------------------------------------------
consensus_8399#2      ------------------------------------------------------------
                                                                                  

consensus_8399#0      CTCAAAAACGGTTACTAAAGATTTATTTATTTT 849
consensus_8399#1      ---------------------------------
consensus_8399#2      ---------------------------------