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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8422#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1301 fasta sequence
[TTCCTCGAGCACTGTTGGCCTACTGGAGCTCAACCTCACGCTCAAGCTGCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCCAGCTCCGGCGACCATCCTGCCCGCCGCCATTCGCCGGAAGAGCCCACCAGCTGCACCGGCGTGGCATCGTCCACTTGGCGAGAGTGGCGGAGCTAGATCGGCTATCGATATATACATAGGTGGTGGATGCGTGCGTGCGAGGTGGTGAGGGTGAGATGAGGTCTCCGGTGGGCCGCAGGGAGGTGGTGGTCTCCGGCGTCTTCACCGCGCTCCTCGTCCTCTCCATCCTCTCCCTCCCGTCGCTCCTCCTCACCGGCCCGGCGTACAAGAGCTGGCCGTTCTTGGCGGCGGCGAGGGACGACTCCACCACCGGGAGCGGCGGCGGCGCGGGTTACTACCCGGTGTCGTTCGCGTACCTCATCTCGGCGTCGACGGGCGACGCGGCGCGGGCGGCGCGGCTGCTGGCGGCGCTGTACCACCCGGCCAACTGCTACCTGCTCCACCTGGACCGGGAGGCGCCGGCGGAGGAGCACCGGCGGCTGGCGGAGCTGGTGTCCGGGCAGCCCGTGTACGCGCGCGCCGGGAACGTGTGGATCGTGGGGCGCCCCAACCTCGTCACCTACCGCGGCCCGACGATGCTGTCCACGACGCTGCACGCGGTGGCGATGCTGCTCCGGCTCGGCCGCCGGTGGGACTGGTTCGTCAACCTCAGCGCCTCCGACTACCCGCTCGTCACCCAGGACGATTTGATGGATGTGTTCTCCAGGTTGCCTAGGGATCTCAACTTCATACAGCATACCAGCCACCTTGGCTGGAAGAT--------AAAGAAGAGGGCGCGGCCGGTGATCCTCGACACGGCGCTGTACGAGGCCGACCGGTCGGAGCTCATCCGTCCGGCGAACCTCACCACCAACCGGCGAAATCTCCCCACCGCCTTCAAGCTCTTCACAGGTTCAGCGTGGACGATGATGTCGCGGCAGTTCGCCGAGTACTTCACCGTCGGCTACGACGACAACCTGCCGCGGACGCTGCTGCTCTACTACACCAACTTCGTCTCCTCGCCGGAGTTCTACTTCCAGACGCTGGCCTGCAACTCCCGGCGGTTCAGGAACACCACGGTGAACCACGACCTGCACTTCATCCGGTGGGACAGCCCGCCCAAGCAGCACCCGCTCTACCTCGGCCCCAGGGACTACCGCCGGATGCTGCTCAGCGCCGCGCCCTTCGCCAGGAAGTTCAGGGAGGACGACCCCGTCCTGGACAGGATCGACCG]
[+] EMBL AK105017 [TTCCTCGAGCACTGTTGGCCTACTGGAGCTCAACCTCACGCTCAAGCTGCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCCAGCTCCGGCGACCATCCTGCCCGCCGCCATTCGCCGGAAGAGCCCACCAGCTGCACCGGCGTGGCATCGTCCACTTGGCGAGAGTGGCGGAGCTAGATCGGCTATCGATATATACATAGGTGGTGGATGCGTGCGTGCGAGGTGGTGAGGGTGAGATGAGGTCTCCGGTGGGCCGCAGGGAGGTGGTGGTCTCCGGCGTCTTCACCGCGCTCCTCGTCCTCTCCATCCTCTCCCTCCCGTCGCTCCTCCTCACCGGCCCGGCGTACAAGAGCTGGCCGTTCTTGGCGGCGGCGAGGGACGACTCCACCACCGGGAGCGGCGGCGGCGCGGGTTACTACCCGGTGTCGTTCGCGTACCTCATCTCGGCGTCGACGGGCGACGCGGCGCGGGCGGCGCGGCTGCTGGCGGCGCTGTACCACCCGGCCAACTGCTACCTGCTCCACCTGGACCGGGAGGCGCCGGCGGAGGAGCACCGGCGGCTGGCGGAGCTGGTGTCCGGGCAGCCCGTGTACGCGCGCGCCGGGAACGTGTGGATCGTGGGGCGCCCCAACCTCGTCACCTACCGCGGCCCGACGATGCTGTCCACGACGCTGCACGCGGTGGCGATGCTGCTCCGGCTCGGCCGCCGGTGGGACTGGTTCGTCAACCTCAGCGCCTCCGACTACCCGCTCGTCACCCAGGACGATTTGATGGATGTGTTCTCCAGGTTGCCTAGGGATCTCAACTTCATACAGCATACCAGCCACCTTGGCTGGAAGAT AAGAGGGCGCGGCCGGTGATCCTCGACACGGCGCTGTACGAGGCCGACCGGTCGGAGCTCATCCGTCCGGCGAACCTCACCACCAACCGGCGAAATCTCCCCACCGCCTTCAAGCTCTTCACAGGTTCAGCGTGGACGATGATGTCGCGGCAGTTCGCCGAGTACTTCACCGTCGGCTACGACGACAACCTGCCGCGGACGCTGCTGCTCTACTACACCAACTTCGTCTCCTCGCCGGAGTTCTACTTCCAGACGCTGGCCTGCAACTCCCGGCGGTTCAGGAACACCACGGTGAACCACGACCTGCACTTCATCCGGTGGGACAGCCCGCCCAAGCAGCACCCGCTCTACCTCGGCCCCAGGGACTACCGCCGGATGCTGCTCAGCGCCGCGCCCTTCGCCAGGAAGTTCAGGGAGGACGACCCCGTCCTGGACAGGATCGACCG]
[+] EMBL AK061419 [ AACCTCACGCTCAAGCTGCA TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCCAGCTCCGGCGACCATCCTGCCCGCCGCCATTCGCCGGAAGAGCCCACCAGCTGCACCGGCGTGGCATCGTCCACTTGGCGAGAGTGGCGGAGCTAGATCGGCTATCGATATATACATAGGTGGTGGATGCGTGCGTGCGAGGTGGTGAGGGTGAGATGAGGTCTCCGGTGGGCCGCAGGGAGGTGGTGGTCTCCGGCGTCTTCACCGCGCTCCTCGTCCTCTCCATCCTCTCCCTCCCGTCGCTCCTCCTCACCGGCCCGGCGTACAAGAGCTGGCCGTTCTTGGCGGCGGCGAGGGACGACTCCACCACCGGGAGCGGCGGCGGCGCGGGTTACTACCCGGTGTCGTTCGCGTACCTCATCTCGGCGTCGACGGGCGACGCGGCGCGGGCGGCGCGGCTGCTGGCGGCGCTGTACCACCCGGCCAACTGCTACCTGCTCCACCTGGACCGGGAGGCGCCGGCGGAGGAGCACCGGCGGCTGGCGGAGCTGGTGTCCGGGCAGCCCGTGTACGCGCGCGCCGGGAACGTGTGGATCGTGGGGCGCCCCAACCTCGTCACCTACCGCGGCCCGACGATGCTGTCCACGACGCTGCACGCGGTGGCGATGCTGCTCCGGCTCGGCCGCCGGTGGGACTGGTTCGTCAACCTCAGCGCCTCCGACTACCCGCTCGTCACCCAGGACGATTTGATGGATGTGTTCTCCAGGTTGCCTAGGGATCTCAACTTCATACAGCATACCAGCCACCTTGGCTGGAAGATCTCTGCAGAAAGAAGAGGGCGCGGCCGGTGATCCTCGACACGGCGCTGTACGAGGCCGACCGGTCGGAGCTCATCCGTCCGGCGAACCTCACCACCAACCGGCGAAATCTCCCCACCGCCTTCAAGCTCTTCACAGGTTCAGCGTGGACGATGATGTCGCGGCAGTTCGCCGAGTACTTCACCGTCGGCTACGACGACAACCTGCCGCGGACGCTGCTGCTCTACTACACCAACTTCGTCTCCTCGCCGGAGTTCTACTTCCAGACGCTGGCCTGCAACTCCCGGCGGTTCAGGAACACCACGGTGAACCACGACCTGCACTTCATCCGGTGGGACAGCCCGCCCAAGCAGCACCCGCTCTACCTCGGCCCCAGGGACTACCGCCGGATGCTGCTCAGCGCCGCGCCCTTCGCCAGGAAGTTCAGGGAGGACGACCCCGTCCTGGACAGGATCGACCG]
[+] EMBL AK071270 [ CTCACGCTCAAGCTGCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCCAGCTCCGGCGACCATCCTGCCCGCCGCCATTCGCCGGAAGAGCCCACCAGCTGCACCGGCGTGGCATCGTCCACTTGGCGAGAGTGGCGGAGCTAGATCGGCTATCGATATATACATAGGTGGTGGATGCGTGCGTGCGAGGTGGTGAGGGTGAGATGAGGTCTCCGGTGGGCCGCAGGGAGGTGGTGGTCTCCGGCGTCTTCACCGCGCTCCTCGTCCTCTCCATCCTCTCCCTCCCGTCGCTCCTCCTCACCGGCCCGGCGTACAAGAGCTGGCCGTTCTTGGCGGCGGCGAGGGACGACTCCACCACCGGGAGCGGCGGCGGCGCGGGTTACTACCCGGTGTCGTTCGCGTACCTCATCTCGGCGTCGACGGGCGACGCGGCGCGGGCGGCGCGGCTGCTGGCGGCGCTGTACCACCCGGCCAACTGCTACCTGCTCCACCTGGACCGGGAGGCGCCGGCGGAGGAGCACCGGCGGCTGGCGGAGCTGGTGTCCGGGCAGCCCGTGTACGCGCGCGCCGGGAACGTGTGGATCGTGGGGCGCCCCAACCTCGTCACCTACCGCGGCCCGACGATGCTGTCCACGACGCTGCACGCGGTGGCGATGCTGCTCCGGCTCGGCCGCCGGTGGGACTGGTTCGTCAACCTCAGCGCCTCCGACTACCCGCTCGTCACCCAGGACGATTTGATGGATGTGTTCTCCAGGTTGCCTAGGGATCTCAACTTCATACAGCATACCAGCCACCTTGGCTGGAAGAT AAAGAAGAGGGCGCGGCCGGTGATCCTCGACACGGCGCTGTACGAGGCCGACCGGTCGGAGCTCATCCGTCCGGCGAACCTCACCACCAACCGGCGAAATCTCCCCACCGCCTTCAAGCTCTTCACAGGTTCAGCGTGGACGATGATGTCGCGGCAGTTCGCCGAGTACTTCACCGTCGGCTACGACGACAACCTGCCGCGGACGCTGCTGCTCTACTACACCAACTTCGTCTCCTCGCCGGAGTTCTACTTCCAGACGCTGGCCTGCAACTCCCGGCGGTTCAGGAACACCACGGTGAACCACGACCTGCACTTCATCCGGTGGGACAGCCCGCCCAAGCAGCACCCGCTCTACCTCGGCCCCAGGGACTACCGCCGGATGCTGCTCAGCGCCGCGCCCTTCGCCAGGAAGTTCAGGGAGGACGACCCCGTCCTGGACAGGATCGACCG]
[+] EMBL CB657473 [ CCGGGCAGCCCGTGTACGCGCGCGCCGGGAACGTGTGGATCGTGGGGCGCCCCAACCTCGTCACCTACCGCGGCCCGACGATGCTGTCCACGACGCTGCACGCGGTGGCGATGCTGCTCCGGCTCGGCCGCCGGTGGGACTGGTTCGTCAACCTCAGCGCCTCCGACTACCCGCTCGTCACCCAGGACGATTTGATGGATGTGTTCTCCAGGTTGCCTAGGGATCTCAACTTCATACAGCATACCAGCCACCTTGGCTGGAAGAT AAAGAAGAGGGCGCGGCCGGTGATCCTCGACACGGCGCTGTACGAGGCCGACCGGTCGGAGCTCATCCGTCCGGCGAACCTCACCACCAACCGGCGAAATCTCCCCACCGCCTTCAAGCTCTTCACAGGTTCAGCGTGGACGATGATGTCGCGGCAGTTCGCCGAGTACTTCACCGTCGGCTACGACGACAACCTGCCGCGGACGCTGCTGCTCTACTACACCAACTTCGTCTCCTCGCCGGAGTTCTACTTCCAGACGCTGGCCTGCAACTCCCGGCGGTTCAGGAACACCACGGTGAACCACGACCTGCACTTCATCCGGTGGGACAGCCCGCCCAAGCAGCACCCGCTCTACCTCGGCCCCAGGGACTACCGCCGGATGCTGCTCAGCGCCGCGCCCTTCGCCAGGAAGTTCAGGGAGGACGACCCCGTCCTGGACAGGATCGACCG]
consensusID : consensus_8422#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 605 fasta sequence
[TCGTGCCGAATTCGGCACGAGACGCTCANGCTGCNNCNCNCNCNCNCNCNCNCNCNCNCNCNCNCNCNCNCCACCAGCNCCGGCGACCATCCTGCCNGCCGCCATTCGCCGGAAGAGCCCACCAGCTGCACCGGCGTGGCATCGTCCACTTGGCGAGAGTGGCGGAGCTAGATNGGCTATCGNTATATACNTNGGTGGTGGATGCGTGCGTGCGANGTGGTGAGGGTGAGATGAGGTCTNNGGTGGGCCGCACGGAAGTGGTGGTCTNNGGCGTNTNNACCGCGCTCCNCGNCCACNCCNACCNCNCCCTCCCGNCGCNCCNNCTNACCGGCCCGGCGTACAAAAACTGGCCGTNCTTGGCNGCGGNNAAGGACNACTCNACCANCNGGAACNGCNGCNGCCNGGTTANACCCGGTGTCGTNCGCGTACTCNNCTCCGCTTCNACGGGCGACCCGCNCGGGCGGCGCNGCTGCTGGCNGCNCTGTACCACCGGCCACTGCTACCTGCTCCNCCTNNACCGGGAAGCGCCCGCGAAGAACACCCGCGGNTGGCNGAACTGGTGTTCCGGCNCCCCTGTACCCCCCCCCGGAAANTTTTGATNCTNG]
[+] EMBL BE229616 [TCGTGCCGAATTCGGCACGAGACGCTCANGCTGCNNCNCNCNCNCNCNCNCNCNCNCNCNCNCNCNCNCNCCACCAGCNCCGGCGACCATCCTGCCNGCCGCCATTCGCCGGAAGAGCCCACCAGCTGCACCGGCGTGGCATCGTCCACTTGGCGAGAGTGGCGGAGCTAGATNGGCTATCGNTATATACNTNGGTGGTGGATGCGTGCGTGCGANGTGGTGAGGGTGAGATGAGGTCTNNGGTGGGCCGCACGGAAGTGGTGGTCTNNGGCGTNTNNACCGCGCTCCNCGNCCACNCCNACCNCNCCCTCCCGNCGCNCCNNCTNACCGGCCCGGCGTACAAAAACTGGCCGTNCTTGGCNGCGGNNAAGGACNACTCNACCANCNGGAACNGCNGCNGCCNGGTTANACCCGGTGTCGTNCGCGTACTCNNCTCCGCTTCNACGGGCGACCCGCNCGGGCGGCGCNGCTGCTGGCNGCNCTGTACCACCGGCCACTGCTACCTGCTCCNCCTNNACCGGGAAGCGCCCGCGAAGAACACCCGCGGNTGGCNGAACTGGTGTTCCGGCNCCCCTGTACCCCCCCCCGGAAANTTTTGATNCTNG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8422#0 TTCCTCGAGCACTGTTGGCCTACTGGAGCTCAACCTCACGCTCAAGCTGCATCTCTCTCT 60
consensus_8422#1 -----------TCGT--GCCGAATTCGGCACGAG---ACGCTCANGCTGCNNCNCNCNCN 44
** *** * * ** * * ******* ***** * * * *
consensus_8422#0 CTCTCTCTCTCTCTCTCTCTCTCTCTCCTCCAGCTCCGGCGACCATCCTGCCCGCCGCCA 120
consensus_8422#1 CNCNCNCNCNCNCNCNCNCNCNCNCNCCACCAGCNCCGGCGACCATCCTGCCNGCCGCCA 104
* * * * * * * * * * * * * ** ***** ***************** *******
consensus_8422#0 TTCGCCGGAAGAGCCCACCAGCTGCACCGGCGTGGCATCGTCCACTTGGCGAGAGTGGCG 180
consensus_8422#1 TTCGCCGGAAGAGCCCACCAGCTGCACCGGCGTGGCATCGTCCACTTGGCGAGAGTGGCG 164
************************************************************
consensus_8422#0 GAGCTAGATCGGCTATCGATATATACATAGGTGGTGGATGCGTGCGTGCGAGGTGGTGAG 240
consensus_8422#1 GAGCTAGATNGGCTATCGNTATATACNTNGGTGGTGGATGCGTGCGTGCGANGTGGTGAG 224
********* ******** ******* * ********************** ********
consensus_8422#0 GGTGAGATGAGGTCTCCGGTGGGCCGCAGGGAGGTGGTGGTCTCCGGCGTCTTCACCGCG 300
consensus_8422#1 GGTGAGATGAGGTCTNNGGTGGGCCGCACGGAAGTGGTGGTCTNNGGCGTNTNNACCGCG 284
*************** *********** *** ********** ***** * ******
consensus_8422#0 CTCCTCGTCCTCTCCATCCTCTCCCTCCCGTCGCTCCTCCTCACCGGCCCGGCGTACAAG 360
consensus_8422#1 CTCCNCGNCCACNCCNACCNCNCCCTCCCGNCGCNCCNNCTNACCGGCCCGGCGTACAAA 344
**** ** ** * ** ** * ******** *** ** ** *****************
consensus_8422#0 AGCTGGCCGTTCTTGGCGGCGGCGAGGGACGACTCCACCACCGGGAGCGGCGGCGGCGCG 420
consensus_8422#1 AACTGGCCGTNCTTGGCNGCGGNNAAGGACNACTCNACCANCNGGAACNGCNGCNGC-CN 403
* ******** ****** **** * **** **** **** * *** * ** ** ** *
consensus_8422#0 GGTTACTACCCGGTGTCGTTCGCGTACCTCATCTCGGCGTCGACGGGCGACGCGGCGCGG 480
consensus_8422#1 GGTTAN-ACCCGGTGTCGTNCGCGTAC-TCNNCTCCGCTTCNACGGGCGACCCG-CNCGG 460
***** ************ ******* ** *** ** ** ********* ** * ***
consensus_8422#0 GCGGCGCGGCTGCTGGCGGCGCTGTACCACCCGGCCAACTGCTACCTGCTCCACCTGGAC 540
consensus_8422#1 GCGGCGCNGCTGCTGGCNGCNCTGTACCACC-GGCCA-CTGCTACCTGCTCCNCCTNNAC 518
******* ********* ** ********** ***** ************** *** **
consensus_8422#0 CGGGAGGCGCCGGCGGAGGAGCACCGGCGGCTGGCGGAGCTGGTGTCCGGGCAGCCCGTG 600
consensus_8422#1 CGGGAAGCGCCCGCGAAG-AACACCCGCGGNTGGCNGAACTGGTGTTCCGGCN-CCCCTG 576
***** ***** *** ** * **** **** **** ** ******* * *** *** **
consensus_8422#0 TACGCGCGCGCCGGGAACGTGTGGATCGTGGGGCGCCCCAACCTCGTCACCTACCGCGGC 660
consensus_8422#1 TACCCCCCC-CCGGAAANTTTTGATNCTNG------------------------------ 605
*** * * * **** ** * ** * *
consensus_8422#0 CCGACGATGCTGTCCACGACGCTGCACGCGGTGGCGATGCTGCTCCGGCTCGGCCGCCGG 720
consensus_8422#1 ------------------------------------------------------------
consensus_8422#0 TGGGACTGGTTCGTCAACCTCAGCGCCTCCGACTACCCGCTCGTCACCCAGGACGATTTG 780
consensus_8422#1 ------------------------------------------------------------
consensus_8422#0 ATGGATGTGTTCTCCAGGTTGCCTAGGGATCTCAACTTCATACAGCATACCAGCCACCTT 840
consensus_8422#1 ------------------------------------------------------------
consensus_8422#0 GGCTGGAAGATAAAGAAGAGGGCGCGGCCGGTGATCCTCGACACGGCGCTGTACGAGGCC 900
consensus_8422#1 ------------------------------------------------------------
consensus_8422#0 GACCGGTCGGAGCTCATCCGTCCGGCGAACCTCACCACCAACCGGCGAAATCTCCCCACC 960
consensus_8422#1 ------------------------------------------------------------
consensus_8422#0 GCCTTCAAGCTCTTCACAGGTTCAGCGTGGACGATGATGTCGCGGCAGTTCGCCGAGTAC 1020
consensus_8422#1 ------------------------------------------------------------
consensus_8422#0 TTCACCGTCGGCTACGACGACAACCTGCCGCGGACGCTGCTGCTCTACTACACCAACTTC 1080
consensus_8422#1 ------------------------------------------------------------
consensus_8422#0 GTCTCCTCGCCGGAGTTCTACTTCCAGACGCTGGCCTGCAACTCCCGGCGGTTCAGGAAC 1140
consensus_8422#1 ------------------------------------------------------------
consensus_8422#0 ACCACGGTGAACCACGACCTGCACTTCATCCGGTGGGACAGCCCGCCCAAGCAGCACCCG 1200
consensus_8422#1 ------------------------------------------------------------
consensus_8422#0 CTCTACCTCGGCCCCAGGGACTACCGCCGGATGCTGCTCAGCGCCGCGCCCTTCGCCAGG 1260
consensus_8422#1 ------------------------------------------------------------
consensus_8422#0 AAGTTCAGGGAGGACGACCCCGTCCTGGACAGGATCGACCG 1301
consensus_8422#1 -----------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||