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Oryza sativa
cluster # 8458 cluster # 8458       Sequences # 5       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8458#0 length = 1091 sequences # 5  

consensusID : consensus_8458#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1091
fasta sequence
                              [AGCTCAGACACCTCAAATCCACGCACGCCGCCGGCGAAAATGGCCGTCTACATCCGCCTCGACGACGCCGTCCGCGCGCGGCTCCGCGGGGACGCCGGGTCGTCGGCGAGCAGCGGCAGCGAGCACGAGGCCTCCGCGTGCCTGTCCGGGCTCGTGCAGGCGTTTCTTGAGACGGAGGGCGCCGCGGCGGGAGAGGACGGCGCCGGGCCGGCGAGCAAGGGCGGCGAAGGGTATGACTCCGATGATGGCGACGGTCCGGAACGCGCGGCGGCGGCGGCGGAGTCCGT-GAGGGAGCTGCTCGACCCGCCGGTGGAGGAGGACCCGTTCCGGGTCAGGCTGGCTGCTGCCGTGGCGGCCGCGATGGAGGCGGAGCCGGCGCTGAGGAGGTACGGGGCGGCGTTCCGGCGCGCCGTGGCGCGGCGGCTGCGGGCCGCCGGGTACGACGCCGGCGTGTGCAAGTCGCGGTGGGAGGCTTCCGGTGGCATCACGGCCGGGACGTACGAGTACGTCGACGTGGTCGCGCCGGCGGCGAGGGGGCAGAAGAGCAGGTACATTGTGGACGCGGACTTCCGGGCGGGGCTGGAGGTCGCGCGCGCGACGGCGGAGTACGCCGTCGTCGTGGCCGCCGTGCCGGCGTCGGTGGTGGTGGCGCGGGAGGAGGCCGTCGGGCGCGCCGTGCGCGTCGCGGCCGACGCGGCGCGGCGGTCGCTCCGTTCGCACGGCCTGCACGTCCCGCCGTGGCGCAAGACCCGGTACATGCTCGCCAAGTGGCTCGGCCCCTACAAGAGGTCGACGGCCACCTCGCCGTCGGCCGCCGGAGCAATGCCGATGCCCGCCGCCGCCGCCGGGATGGACGTCAAGTGCCGCGCCGTCGGGTTCTTCACGCCGCCGCCGGCCGCTCCGGCGGCGAGGATCAAGTAGACTCGGCGATGAAACATCATAATCAAGGCATTAATTAACGGTGTTTGTAGACGTAGAGATTAATTAGAGCGAGAGTTCCTTTCAACTTTGAGTTGCTCTCGAATTTGTTTTGTCCA-GATATTTCTGGTCGAGATTAATTATTCAGGAGCAAATTGTTCTAAAAAAAGGAA]

[+] EMBL AK107951             [AGCTCAGACACCTCAAATCCACGCACGCCGCCGGCGAAAATGGCCGTCTACATCCGCCTCGACGACGCCGTCCGCGCGCGGCTCCGCGGGGACGCCGGGTCGTCGGCGAGCAGCGGCAGCGAGCACGAGGCCTCCGCGTGCCTGTCCGGGCTCGTGCAGGCGTTTCTTGAGACGGAGGGCGCCGCGGCGGGAGAGGACGGCGCCGGGCCGGCGAGCAAGGGCGGCGAAGGGTATGACTCCGATGATGGCGACGGTCCGGAACGCGCGGCGGCGGCGGCGGAGTCCGT GAGGGAGCTGCTCGACCCGCCGGTGGAGGAGGACCCGTTCCGGGTCAGGCTGGCTGCTGCCGTGGCGGCCGCGATGGAGGCGGAGCCGGCGCTGAGGAGGTACGGGGCGGCGTTCCGGCGCGCCGTGGCGCGGCGGCTGCGGGCCGCCGGGTACGACGCCGGCGTGTGCAAGTCGCGGTGGGAGGCTTCCGGTGGCATCACGGCCGGGACGTACGAGTACGTCGACGTGGTCGCGCCGGCGGCGAGGGGGCAGAAGAGCAGGTACATTGTGGACGCGGACTTCCGGGCGGGGCTGGAGGTCGCGCGCGCGACGGCGGAGTACGCCGTCGTCGTGGCCGCCGTGCCGGCGTCGGTGGTGGTGGCGCGGGAGGAGGCCGTCGGGCGCGCCGTGCGCGTCGCGGCCGACGCGGCGCGGCGGTCGCTCCGTTCGCACGGCCTGCACGTCCCGCCGTGGCGCAAGACCCGGTACATGCTCGCCAAGTGGCTCGGCCCCTACAAGAGGTCGACGGCCACCTCGCCGTCGGCCGCCGGAGCAATGCCGATGCCCGCCGCCGCCGCCGGGATGGACGTCAAGTGCCGCGCCGTCGGGTTCTTCACGCCGCCGCCGGCCGCTCCGGCGGCGAGGATCAAGTAGACTCGGCGATGAAACATCATAATCAAGGCATTAATTAACGGTGTTTGTAGATGTAGAGATTAATTAGAGCGAGAGTTCCTTTCAAC                                                                                     ]
[+] EMBL CB650503             [                                                                                                                                                                                                                  GCGAGCAAGGGCGGCGAAGGGTATGACTCCGATGATGGCGACGGTCCGGAACGCGCGGCGGCGGCGGCGGAGTCCGT GAGGGAGCTGCTCGACCCGCCGGTGGAGGAGGACCCGTTCCGGGTCAGGCTGGCTGCTGCCGTGGCGGCCGCGATGGAGGCGGAGCCGGCGCTGAGGAGGTACGGGGCGGCGTTCCGGCGCGCCGTGGCGCGGCGGCTGCGGGCCGCCGGGTACGACGCCGGCGTGTGCAAGTCGCGGTGGGAGGCTTCCGGTGGCATCACGGCCGGGACGTACGAGTACGTCGACGTGGTCGCGCCGGCGGCGAGGGGGCAGAAGAGCAGGTACATTGTGGACGCGGACTTCCGGGCGGGGCTGGAGGTCGCGCGCGCGACGGCGGAGTACGCCGTCGTCGTGGCCGCCGTGCCGGCGTCGGTGGTGGTGGCGCGGGAGGAGGCCGTCGGGCGCGCCGTGCGCGTCGCGGCCGACGCGGCGCGGCGGTCGCTCCGTTCGCACGGCCTGCACGTCCCGCCGTGGCGCAAGACCCGGTACATGCTCGCCAAGTGGCTCGGCCCCTACAAGAGGTCGACGGCCACCTCGCCGTCGGCCGCCGGAGCAATGCCGATGCCCGCCGCCGCCGCCGGGATGGACGTCAAGTGCCGCGCCGTCGGGTTCTTCACGCCGCCGCCGGCCGCTCCGGCGGCGAGGATCAAGTAGACTCGGCGATGAAACATCATAATCAAAGCATTATTTAACGGTGT                                                                                                                               ]
[+] EMBL CB650501             [                                                                                                                                                                                                                  GCGACCCTGGGCGGCGAAGGGTATGACTCCGATGATGGCGACGGTCCGGAACGCGCGGCGGCGGCGGCGGAGTCCGTCCAGGGAGCTGCTCGACCCGCCGGTGGAGGAGGACCCGTTCCGGGTCAGGCTGGCTGCTGCCGTGGCGGCCGCGATGGAGGCGGAGCCGGCGCTGAGGAGGTACGGGGCGGCGTTCCGGCGCGCCGTGGCGCGGCGGCTGCGGGCCGCCGGGTACTACGCCGGCGTGTGCAAGTCGCGGTGGGAGGCTTCCGGTGGCATCACGGCCGGGACGTACGAGTACGTCGACGTGGTCGCGCCGGCGGCGAGGGGGCAGAAGAGCAGGTACATTGTGGACGCGGACTTCCGGGCGGGGCTGGAGGTCGCGCGCGCGACGGCGGAGTACGCCGTCGTCGTGGCCGCCGTGCCGGCGTCGGTGGTGGTGGCGCGGGAGGAGGCCGTCGGGCGCGCCGTGCGCGTCGCGGCCGACGCGGCGCGGCGGTCGCTCCGTTCGCACGGCCTGCACGTCCCGCCGTGGCGCAAGACCCGGTACATGCTCGCCAAGTGGCTCGGCCCCTACAAGAGGTCGACGGCCACCTCGCCGTCGGCCGCCGGAGCAATGCCGATGCCCGCCGCCGCCGCCGGGATGGACGTCAAGTGCCGCGCCGTCG                                                                                                                                                                                                                          ]
[-] EMBL CB650502             [                                                                                                                                                                                                                                                                                                                                                                                 GGAGCCGGCGCTGAGGAGGTACGGGGCGGCGTTCCGGCGCGCCGTGGCGCGGCGGCTGCGGGCCGCTGGGTACGACGCCGGCGTGTGCAAGTCGCGGTGGGAGGCTTCCGGTGGCATCACGGCCGGGACGTACGAGTAAGTCGACGTGGTCGCGCCGGCGGCGAGGGGGCAGAAGAGCAGGTACATTGTGGACGCGGACTTCCGGGCGGGGCTGGAGGTCGCGCGCGCGACGGCGGAGTACGCCGTCGTCGTGGCCGCCGTGCCGGCGTCGGTGGTGGTGGCGCGGGAGGAGTCCGTCGGGCGCGCCGTGCGCGTCGCGGCCGACGCGGAGCGGCGGTCGCTCCGTTCGCACGGCTTGCACGTCCCGCCGTGGCGCAAGACCCGGTACATGCTCTCCAAGTGGCTCGGCCCCTACAAGAGGTAGACGGCCACCTCGCCGTCGGCCGCCGGAGCAATGCCGATGCCCGCCGCCGCCGCCGGGATGGAGGTCAAGTGCCGCGCCGTCGGGTTCTTCACGCCGCCGCCGGCCGCTCCGGCGGCGAGGATCAAGTAGACTCGGCGATGAAACATCATAATCAAGGCATTAATTAACGGTGTTTGTAGACGTAGAGATTAATTAGAGCGAGAGTTCCTTTCAACTTTGAGTTGCTCTCGAATTTGTTTTGTCCATGATATTTCTGGTCGAGATTAATTATTCAGGAGCAAATTGTTCTAAAAAAAGGAA]
[-] EMBL CB650504             [                                                                                                                                                                                                                                                                                                                                                                                  GAGCCGGCGCTGAGGAGGTACGGGGCGGCGTTCCGGCGCGCCGTGGCGCGGCGGCTGCGGGCCGCCGGGTACGACGCCGGCGTGTGCAAGTCGCGGTGGGAGGCTTCCGGTGGCATCACGGCCGGGACGTACGAGTACGTCGACGTGGTCGCGCCGGCGGCGAGGGGGCAGAAGAGCAGGTACATTGTGGACGCGGACTTCCGGGCGGGGCTGGAGGTCGCGCGCGCGACGGCGGAGTACGCCGTCGTCGTGGCCGCCGTGCCGGCGTCGGTGGTGGTGGCGCGGGAGGAGGCCGTCGGGCGCGCCGTGCGCGTCGCGGCCGACGCGGCGCGGCGGTCGCTCCGTTCGCACGGCCTGCACGTCCCGCCGTGGCGCAAGACCCGGTACATGCTCGCCAAGTGGCTCGGCCCCTACAAGAGGTCGACGGCCACCTCGCCGTCGGCCGCCGGAGCAATGCCGATGCCCGCCGCCGCCGCCGGGATGGACGTCAAGTGCCGCGCCGTCGGGTTCTTCACGCCGCCGCCGGCCGCTCCGGCGGCGAGGATCAAGTAGACTCGGCGATGAAACATCATAATCAAGGCATTAATTAACGGTGTTTGTAGAGGTAGAGATTAATTAGAGCGAGAGTTCCTTTCAACTTTGAGTTGCTCTCGAATTTGTTTTGTACA GATATTAAGGGTCGAGATTAATTATTAAGGAGCAAATTGTT             ]


>consensus_8458#0 AGCTCAGACACCTCAAATCCACGCACGCCGCCGGCGAAAATGGCCGTCTACATCCGCCTC GACGACGCCGTCCGCGCGCGGCTCCGCGGGGACGCCGGGTCGTCGGCGAGCAGCGGCAGC GAGCACGAGGCCTCCGCGTGCCTGTCCGGGCTCGTGCAGGCGTTTCTTGAGACGGAGGGC GCCGCGGCGGGAGAGGACGGCGCCGGGCCGGCGAGCAAGGGCGGCGAAGGGTATGACTCC GATGATGGCGACGGTCCGGAACGCGCGGCGGCGGCGGCGGAGTCCGTGAGGGAGCTGCTC GACCCGCCGGTGGAGGAGGACCCGTTCCGGGTCAGGCTGGCTGCTGCCGTGGCGGCCGCG ATGGAGGCGGAGCCGGCGCTGAGGAGGTACGGGGCGGCGTTCCGGCGCGCCGTGGCGCGG CGGCTGCGGGCCGCCGGGTACGACGCCGGCGTGTGCAAGTCGCGGTGGGAGGCTTCCGGT GGCATCACGGCCGGGACGTACGAGTACGTCGACGTGGTCGCGCCGGCGGCGAGGGGGCAG AAGAGCAGGTACATTGTGGACGCGGACTTCCGGGCGGGGCTGGAGGTCGCGCGCGCGACG GCGGAGTACGCCGTCGTCGTGGCCGCCGTGCCGGCGTCGGTGGTGGTGGCGCGGGAGGAG GCCGTCGGGCGCGCCGTGCGCGTCGCGGCCGACGCGGCGCGGCGGTCGCTCCGTTCGCAC GGCCTGCACGTCCCGCCGTGGCGCAAGACCCGGTACATGCTCGCCAAGTGGCTCGGCCCC TACAAGAGGTCGACGGCCACCTCGCCGTCGGCCGCCGGAGCAATGCCGATGCCCGCCGCC GCCGCCGGGATGGACGTCAAGTGCCGCGCCGTCGGGTTCTTCACGCCGCCGCCGGCCGCT CCGGCGGCGAGGATCAAGTAGACTCGGCGATGAAACATCATAATCAAGGCATTAATTAAC GGTGTTTGTAGACGTAGAGATTAATTAGAGCGAGAGTTCCTTTCAACTTTGAGTTGCTCT CGAATTTGTTTTGTCCAGATATTTCTGGTCGAGATTAATTATTCAGGAGCAAATTGTTCT AAAAAAAGGAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)