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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8553#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1516 fasta sequence
[GCAGCAGCAGCACGCCGCGCGCGATGGCCGCCGGAGCGCCGCCGCTCGCCGGCGTCGGAGACCGGGGCTCGTCCTCCTCCTCCTCGCACCCGCCTCCGCCTCCCCCTCCCAAGATCCTTCTCGCCAAGCCCCCGCTTCCGCCCCCCTCGTCCTCCGGCGCCGACGACGACGGCGGCGGCGGAGGAGGCGCGGGCCGCTCGCGGCAGGCCACGCAGCCTGGCTCGCTCAGCCTCGTCTCCGACGCGTGGGAGGTCCACACCGACAAGATCCTCCCGTATTTGACTGAGAACAATGATTTCATGGTGATTGGAGTAATTGGTCCAACTGGTGTGGGCAAGTCAACCATCATGAACGAGCTTTATGGATATGATGGAAGCTCACCTGGAATGCTTCCTCCTTTTGCTACACAAACTGAGGAAATCAAAGCAATGGCTAAGCACTGTACTGCTGGCATTGATATCAGGATCTCTAATGAACGGGTTATACTTCTAGACACTCAGCCAGTATTCAGTCCCTCCGTACTAATTGATATGATGAAGCCAGATGGTTCATCCGCAATTCCTATCCTCAGTGGTGATCCATTATCAGCAGACCTGGCTCATGAGTTAATGGGAATCCAGCTTGGTGTTTTCTTGGCATCTGTTTGCAATATTTTGTTGGTTGTATCGGAGGGGATTAATGACCTGTCCATGTGGGACCTCATTCTTACGGTTGATTTACTGAAGCACAACATACCTGATCCATCATTATTGACCTCCTCAACTACCCAAGACAAGGAAAACAAAAATGATAACCAATCAGGCATTGAAGATTACATAGCTGATCTCTGTTTTGTGCATGCTAGATT--GGGAACAAGACTTTTCTCCTTCAAAGCTCATGGTTCTGAAGAGGGTTCTTGAAAAACACTTCAAGTCCTCCTCCTTTAGCATTGGAAGCTCTGGAGCAACACCTCAAGTTTCTGACTCCTCAGTTCCTTC-AAGCATGAAGATTGAGGATCTGAGCTCC-AATCAGCAGGAC-ATATATCTTCTTCCATTAAGAACACCTGATAACTCAACAAATTTTGAGTATCGGACATGTCCATCCATGTTAGGGATGCTTCGTGATCAGATCTTATCAAGGCCATCGAGGTCATTCTCGAAGAATCTCA-CCGAGCGTGACTGGTTGAGGAGCTCAGCGAAGATCTGGGACA-TGGTGAAGAAATCTCCTGTCATCTTAGAATATTGCAAAACACTTCAGGATTCAGGGTTTTTCAGAAAGTAGCCATAGTTACCTAGCTGTTT-GCATGTTCT-TACGTGACTACATTACTAGATCAGATGAATT-TGGTACTGTATGTGATTATGTATATCTCGGATTCTGTTTTTGCCCCCATCTTTTGAGTTCATCTTAACATCTTTGNTCTCACCGGTAGCAACAGCTTTTTTCTTNCTTGCTTCAGAAACCAGAAGCAATGCTGAAAGATTCAGAGACCAGNAACAAGNTCAGTAGAAACCACCAAGGTCTTTGCTGAGCTAGAGGA]
[+] EMBL AK067972 [GCAGCAGCAGCACGCCGCGCGCGATGGCCGCCGGAGCGCCGCCGCTCGCCGGCGTCGGAGACCGGGGCTCGTCCTCCTCCTCCTCGCACCCGCCTCCGCCTCCCCCTCCCAAGATCCTTCTCGCCAAGCCCCCGCTTCCGCCCCCCTCGTCCTCCGGCGCCGACGACGACGGCGGCGGCGGAGGAGGCGCGGGCCGCTCGCGGCAGGCCACGCAGCCTGGCTCGCTCAGCCTCGTCTCCGACGCGTGGGAGGTCCACACCGACAAGATCCTCCCGTATTTGACTGAGAACAATGATTTCATGGTGATTGGAGTAATTGGTCCAACTGGTGTGGGCAAGTCAACCATCATGAACGAGCTTTATGGATATGATGGAAGCTCACCTGGAATGCTTCCTCCTTTTGCTACACAAACTGAGGAAATCAAAGCAATGGCTAAGCACTGTACTGCTGGCATTGATATCAGGATCTCTAATGAACGGGTTATACTTCTAGACACTCAGCCAGTATTCAGTCCCTCCGTACTAATTGATATGATGAAGCCAGATGGTTCATCCGCAATTCCTATCCTCAGTGGTGATCCATTATCAGCAGACCTGGCTCATGAGTTAATGGGAATCCAGCTTGGTGTTTTCTTGGCATCTGTTTGCAATATTTTGTTGGTTGTATCGGAGGGGATTAATGACCTGTCCATGTGGGACCTCATTCTTACGGTTGATTTACTGAAGCACAACATACCTGATCCATCATTATTGACCTCCTCAACTACCCAAGACAAGGAAAACAAAAATGATAACCAATCAGGCATTGAAGATTACATAGCTGATCTCTGTTTTGTGCATGCTAGATT GGGAACAAGACTTTTCTCCTTCAAAGCTCATGGTTCTGAAGAGGGTTCTTGAAAAACACTTCAAGTCCTCCTCCTTTAGCATTGGAAGCTCTGGAGCAACACCTCAAGTTTCTGACTCCTCAGTTCCTTC AAGCATGAAGATTGAGGATCTGAGCTCC AATCAGCAGGAC ATATATCTTCTTCCATTAAGAACACCTGATAACTCAACAAATTTTGAGTATCGGACATGTCCATCCATGTTAGGGATGCTTCGTGATCAGATCTTATCAAGGCCATCGAGGTCATTCTCGAAGAATCTCA CCGAGCGTGACTGGTTGAGGAGCTCAGCGAAGATCTGGGACA TGGTGAAGAAATCTCCTGTCATCTTAGAATATTGCAAAACACTTCAGGATTCAGGGTTTTTCAGAAAGTAGCCATAGTTACCTAGCTGTTT GCATGTTCT TACGTGACTACATTACTAGATCAGATGAATT TGGTACTGTATGTGATTATGTATATCTCGGATTCTGT ]
[+] EMBL CA765362 [ CATTCTTACGGTTGATTTACTGAAGCACAGCATACCTGATCCATCATTATTGACCTCCTCAACTACCCAAGACAAGGAAAACAAAAATGATAACCAATCAGGCATTGAAGATTACATAGCTGATCTCTGTTTTGTGCATGCTAGATTGCGGGAACAAGACTTTTCTCCCTCAAAGCTCATGGTTCTGAAGAGTGTTCTTGAAAAACACTTCAAGTCCTCCTCCTTTAGCATTGGAAGCTCTGGAGCAACACCTCAAGTTTCTGACTCCTCAGTTCCTTC AAGCATGAAGATTGAGGATCTGAGCTCC AATCAGCAGGAC ATATATCTTCTTCCATTAAGAACACCTGATAACTCAACAAATTTTGAGTATCGGACATGTCCATCCATGTTAGGGATGCTTCGTGATCAGATCTTATCAAGGCCATCGAGGTCATTCTTGAAGAATCTCA CCGAGCGTGACTGGTTGAGGAGCTCAGCAAAGATCTGGGACA TGGTGAAGAAATCTCCTGTCATCTCAGAATATTGCAAAACACTTCAGGATTCAGGGTTTTTCAGAAAGTAGCCATAGTTACCTAGCTGTTT GCATGTTCT TACGTGACTACATTACTAGATCAGATGAATT TGGTACTGTATGTGATTATGTATATCTCGGATTCTGGTTTTGCCCCCATCTTTTGAGTTCATCTTAACATCTTTGNTCTCACCGGTAGCAACAGCTTTTTTCTTNCTTGCTTCAGAAACCAGAAGCAATGCTGAAAGATTCAGAGACCAGNAACAAGNTCAGTAGAAACCACCAAGGTCTTTGCTGAGCTAGAGGA]
[+] EMBL BM038818 [ CCTCAAGTTTCTGACTCCTCAGTTCCTTCAAAGCATGAAGATTGAGGATCTGAGCTCCAAANCA CAGGACAATATATCTTCTTCCNTTAAGAACACCTGATAACTCAACAAATTTTGAGTATCGGACATGTCCATCCATGTTAGGGATGCTTCGTGATCAGATCTTATCAA GCCATCGAGGTCATTCTCGAAGAATCTCACCCGAGCGTGACTGGTTGAGGAGCTCAGCGAAGATCTGGGACACTGGTGAAGAAATCTCCTGTCATCTTAGAATA TNC AAACACTTCAGGATTCAGGGTTTTTCAGAAAGTACCCATAGTTACCTAGCTGTTTGGCANGTTCTGTACGGGACTACATTACTAGATCAGATGAATTNGGGTACTGTATGTGATTNTGTATATCTCGGATTCTGTTTTaaaaaa ]
consensusID : consensus_8553#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 405 fasta sequence
[AAGATCCTCCCGTATTTGACTGAGAACAATGATTTCATGGTGATTGGAGTAATTGGTCCAACTGGTGTGGGCAAGTCAACCATCATGAACGAGCTTTATGGATATGATGGAAGCTCACCTGGAATGCTTCCTCCTTTTGCTACACAAACTGAGGAAATCAAAGCAATGGCTAAGCACTGTACTGCTGGCATTGATATCAGGATCTCTAATGAACGGGTTATACTTCTAGACACTCAGCCAGTATTCAGTCCCTCCGTACTAATTGATATGATGAAGCCAGATGGTTCATCCGNNNNTCCTATCCTCAGTGGTGATCCATTATCAGCAGNNNTNGCTCATGAGNTAATGGGAATCCNNNNNNTGCTGTNNNNTGGGTTTTCTTGNCATCTGTTTGCNNTNNNNNNN]
[+] EMBL CF196602 [AAGATCCTCCCGTATTTGACTGAGAACAATGATTTCATGGTGATTGGAGTAATTGGTCCAACTGGTGTGGGCAAGTCAACCATCATGAACGAGCTTTATGGATATGATGGAAGCTCACCTGGAATGCTTCCTCCTTTTGCTACACAAACTGAGGAAATCAAAGCAATGGCTAAGCACTGTACTGCTGGCATTGATATCAGGATCTCTAATGAACGGGTTATACTTCTAGACACTCAGCCAGTATTCAGTCCCTCCGTACTAATTGATATGATGAAGCCAGATGGTTCATCCGNNNNTCCTATCCTCAGTGGTGATCCATTATCAGCAGNNNTNGCTCATGAGNTAATGGGAATCCNNNNNNTGCTGTNNNNTGGGTTTTCTTGNCATCTGTTTGCNNTNNNNNNN]
consensusID : consensus_8553#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 356 fasta sequence
[AAGATCCTCCCGTATTTGACTGAGAACAATGATTTCATGGTGATTGGAGTAATTGGTCCAACTGGTGTGGGCAAGTCAACCATCATGAACGAGCTTTATGGATATGATGGAAGCTCACCTGGAATGCTTCCTCCTTTTGCTACACAAACTGAGGAAATCAAAGCAATGGCTAAGCACTGTACTGCTGGCATTGATATCAGGATCTCTAATGAACGGGTTATACTTCTAGACACNTCNNCCAGTATTNNNTCCCTCCGTACTAATTGATNNNATGANNNCAGATGGTTCATCCGCAATTCCTATCCTCNNNGGTNATCCATTATCNNNNNNCCTGGCTCATGAGTTANNNNNNATCC]
[+] EMBL CF196685 [AAGATCCTCCCGTATTTGACTGAGAACAATGATTTCATGGTGATTGGAGTAATTGGTCCAACTGGTGTGGGCAAGTCAACCATCATGAACGAGCTTTATGGATATGATGGAAGCTCACCTGGAATGCTTCCTCCTTTTGCTACACAAACTGAGGAAATCAAAGCAATGGCTAAGCACTGTACTGCTGGCATTGATATCAGGATCTCTAATGAACGGGTTATACTTCTAGACACNTCNNCCAGTATTNNNTCCCTCCGTACTAATTGATNNNATGANNNCAGATGGTTCATCCGCAATTCCTATCCTCNNNGGTNATCCATTATCNNNNNNCCTGGCTCATGAGTTANNNNNNATCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8553#0 GCAGCAGCAGCACGCCGCGCGCGATGGCCGCCGGAGCGCCGCCGCTCGCCGGCGTCGGAG 60
consensus_8553#2 ------------------------------------------------------------
consensus_8553#1 ------------------------------------------------------------
consensus_8553#0 ACCGGGGCTCGTCCTCCTCCTCCTCGCACCCGCCTCCGCCTCCCCCTCCCAAGATCCTTC 120
consensus_8553#2 ------------------------------------------------------------
consensus_8553#1 ------------------------------------------------------------
consensus_8553#0 TCGCCAAGCCCCCGCTTCCGCCCCCCTCGTCCTCCGGCGCCGACGACGACGGCGGCGGCG 180
consensus_8553#2 ------------------------------------------------------------
consensus_8553#1 ------------------------------------------------------------
consensus_8553#0 GAGGAGGCGCGGGCCGCTCGCGGCAGGCCACGCAGCCTGGCTCGCTCAGCCTCGTCTCCG 240
consensus_8553#2 ------------------------------------------------------------
consensus_8553#1 ------------------------------------------------------------
consensus_8553#0 ACGCGTGGGAGGTCCACACCGACAAGATCCTCCCGTATTTGACTGAGAACAATGATTTCA 300
consensus_8553#2 -----------------------AAGATCCTCCCGTATTTGACTGAGAACAATGATTTCA 37
consensus_8553#1 -----------------------AAGATCCTCCCGTATTTGACTGAGAACAATGATTTCA 37
*************************************
consensus_8553#0 TGGTGATTGGAGTAATTGGTCCAACTGGTGTGGGCAAGTCAACCATCATGAACGAGCTTT 360
consensus_8553#2 TGGTGATTGGAGTAATTGGTCCAACTGGTGTGGGCAAGTCAACCATCATGAACGAGCTTT 97
consensus_8553#1 TGGTGATTGGAGTAATTGGTCCAACTGGTGTGGGCAAGTCAACCATCATGAACGAGCTTT 97
************************************************************
consensus_8553#0 ATGGATATGATGGAAGCTCACCTGGAATGCTTCCTCCTTTTGCTACACAAACTGAGGAAA 420
consensus_8553#2 ATGGATATGATGGAAGCTCACCTGGAATGCTTCCTCCTTTTGCTACACAAACTGAGGAAA 157
consensus_8553#1 ATGGATATGATGGAAGCTCACCTGGAATGCTTCCTCCTTTTGCTACACAAACTGAGGAAA 157
************************************************************
consensus_8553#0 TCAAAGCAATGGCTAAGCACTGTACTGCTGGCATTGATATCAGGATCTCTAATGAACGGG 480
consensus_8553#2 TCAAAGCAATGGCTAAGCACTGTACTGCTGGCATTGATATCAGGATCTCTAATGAACGGG 217
consensus_8553#1 TCAAAGCAATGGCTAAGCACTGTACTGCTGGCATTGATATCAGGATCTCTAATGAACGGG 217
************************************************************
consensus_8553#0 TTATACTTCTAGACACT-CAGCCAGTATTCAGTCCCTCCGTACTAATTGATATGATGAAG 539
consensus_8553#2 TTATACTTCTAGACACNTCNNCCAGTATTNNNTCCCTCCGTACTAATTGATNNNATGANN 277
consensus_8553#1 TTATACTTCTAGACACT-CAGCCAGTATTCAGTCCCTCCGTACTAATTGATATGATGAAG 276
**************** * ******** ******************* ****
consensus_8553#0 CCAGATGGTTCATCCGCAATTCCTATCCTCAGTGGTGATCCATTATCAGCAGACCTGGCT 599
consensus_8553#2 NCAGATGGTTCATCCGCAATTCCTATCCTCNNNGGTNATCCATTATCNNNNNNCCTGGCT 337
consensus_8553#1 CCAGATGGTTCATCCGNNNNTCCTATCCTCAGTGGTGATCCATTATCAGCAGNNNTNGCT 336
*************** ********** *** ********** * ***
consensus_8553#0 CATGAGTTAATGGGAATCCAGCTTGGTGTTTTCTTGGCATCTGTTTGCAATATTTTGTTG 659
consensus_8553#2 CATGAGTTANNNNNNATCC----------------------------------------- 356
consensus_8553#1 CATGAGNTAATGGGAATCCNNNNNNTGCTGTNNNNTGGGTTTTCTTGNCATCTGTTTGCN 396
****** ** ****
consensus_8553#0 GTTGTATCGGAGGGGATTAATGACCTGTCCATGTGGGACCTCATTCTTACGGTTGATTTA 719
consensus_8553#2 ------------------------------------------------------------
consensus_8553#1 NTNNNNNNN--------------------------------------------------- 405
consensus_8553#0 CTGAAGCACAACATACCTGATCCATCATTATTGACCTCCTCAACTACCCAAGACAAGGAA 779
consensus_8553#2 ------------------------------------------------------------
consensus_8553#1 ------------------------------------------------------------
consensus_8553#0 AACAAAAATGATAACCAATCAGGCATTGAAGATTACATAGCTGATCTCTGTTTTGTGCAT 839
consensus_8553#2 ------------------------------------------------------------
consensus_8553#1 ------------------------------------------------------------
consensus_8553#0 GCTAGATTGGGAACAAGACTTTTCTCCTTCAAAGCTCATGGTTCTGAAGAGGGTTCTTGA 899
consensus_8553#2 ------------------------------------------------------------
consensus_8553#1 ------------------------------------------------------------
consensus_8553#0 AAAACACTTCAAGTCCTCCTCCTTTAGCATTGGAAGCTCTGGAGCAACACCTCAAGTTTC 959
consensus_8553#2 ------------------------------------------------------------
consensus_8553#1 ------------------------------------------------------------
consensus_8553#0 TGACTCCTCAGTTCCTTCAAGCATGAAGATTGAGGATCTGAGCTCCAATCAGCAGGACAT 1019
consensus_8553#2 ------------------------------------------------------------
consensus_8553#1 ------------------------------------------------------------
consensus_8553#0 ATATCTTCTTCCATTAAGAACACCTGATAACTCAACAAATTTTGAGTATCGGACATGTCC 1079
consensus_8553#2 ------------------------------------------------------------
consensus_8553#1 ------------------------------------------------------------
consensus_8553#0 ATCCATGTTAGGGATGCTTCGTGATCAGATCTTATCAAGGCCATCGAGGTCATTCTCGAA 1139
consensus_8553#2 ------------------------------------------------------------
consensus_8553#1 ------------------------------------------------------------
consensus_8553#0 GAATCTCACCGAGCGTGACTGGTTGAGGAGCTCAGCGAAGATCTGGGACATGGTGAAGAA 1199
consensus_8553#2 ------------------------------------------------------------
consensus_8553#1 ------------------------------------------------------------
consensus_8553#0 ATCTCCTGTCATCTTAGAATATTGCAAAACACTTCAGGATTCAGGGTTTTTCAGAAAGTA 1259
consensus_8553#2 ------------------------------------------------------------
consensus_8553#1 ------------------------------------------------------------
consensus_8553#0 GCCATAGTTACCTAGCTGTTTGCATGTTCTTACGTGACTACATTACTAGATCAGATGAAT 1319
consensus_8553#2 ------------------------------------------------------------
consensus_8553#1 ------------------------------------------------------------
consensus_8553#0 TTGGTACTGTATGTGATTATGTATATCTCGGATTCTGTTTTTGCCCCCATCTTTTGAGTT 1379
consensus_8553#2 ------------------------------------------------------------
consensus_8553#1 ------------------------------------------------------------
consensus_8553#0 CATCTTAACATCTTTGNTCTCACCGGTAGCAACAGCTTTTTTCTTNCTTGCTTCAGAAAC 1439
consensus_8553#2 ------------------------------------------------------------
consensus_8553#1 ------------------------------------------------------------
consensus_8553#0 CAGAAGCAATGCTGAAAGATTCAGAGACCAGNAACAAGNTCAGTAGAAACCACCAAGGTC 1499
consensus_8553#2 ------------------------------------------------------------
consensus_8553#1 ------------------------------------------------------------
consensus_8553#0 TTTGCTGAGCTAGAGGA 1516
consensus_8553#2 -----------------
consensus_8553#1 -----------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||