Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 8601 cluster # 8601       Sequences # 5       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8601#0 length = 981 sequences # 5  

consensusID : consensus_8601#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 981
fasta sequence
                              [AATGGCGGCGACACGCGGCTCCGTGCGGCTCCTCCTCCTGATCCTCCTCCTCCGCCCCGCCGCGGCGGGGAGCCCACTGATGATGACGTGCGCCAAGACGCCGCACCCGGACGTGTGCATCACCGTGCTGGGCGCCATCCCGGAGTGCAGGAACACCGGCGACCCGCGCGTCCTCGCCGAGAACGCCGTCCGCTCCGCCGCCACCATCGGCGCGGCGGCGGGCACGTTCGCGCGCGCGGAGCTCGACATCGTGAAGGACACCGACATGTGGCAGTGCCTGGACGAGTGCGCGCAGGACATCGAGGAGGCCGTCTCCCACCTCGACGACACCGAGGGCGGCGTCGTCGACCTCGACGCCAAGTTCAAGGACGTGCGGCTGTTCATGGACGTCGCCGAGAGGGACACGTGGTCGTGCGAGGAGAGCTGCCGGGACGCGCCGGACTCCACCGTCAAGGCCACCCTGCTCGACAAGAACGAGGCGTTCGAGAAGTTCATGCGGGTCACCGGCGCGCTCATCGAGATGGTCATCGGAACGGCCGGCGAGCCGGCGCCGGAGCCGTCAGCTGATGAACACTCGGACGAACTAATACCGGATGTCCAGTTATGATCAATTCATAATGTACTAATCGCTCATGTGACTTCTCATCTCCAT-TTTTGATCGATCGTGTTCAGGTATTTTGATTAGGTTAATTAAGGGTGTGTTCACTTTGATGTCATTTCCAATCATACTATTTTTTTATAAAGTTG-CTAAAAAATATCTAAGTTTAGTTTGTTGCTAAATTTGATAAATACATAAGAAATCCTGTCAAAAATTTAGTAACATTGTCATCTTACTAAAATTTTGATATCACCAAAATTTAGTAAGGTTTAGTAAGGTTTATTTTCCATTTCGTCGAATGTTTTGTTTAACCATCAATAAAGTGGTTGATTCGTTCATTAGCTAACTAATAGATCATCTGATTGTAAAAAAAAAAAAAAAAA]

[+] EMBL AK107563             [AATGGCGGCGACACGCGGCTCCGTGCGGCTCCTCCTCCTGATCCTCCTCCTCCGCCCCGCCGCGGCGGGGAGCCCACTGATGATGACGTGCGCCAAGACGCCGCACCCGGACGTGTGCATCACCGTGCTGGGCGCCATCCCGGAGTGCAGGAACACCGGCGACCCGCGCGTCCTCGCCGAGAACGCCGTCCGCTCCGCCGCCACCATCGGCGCGGCGGCGGGCACGTTCGCGCGCGCGGAGCTCGACATCGTGAAGGACACCGACATGTGGCAGTGCCTGGACGAGTGCGCGCAGGACATCGAGGAGGCCGTCTCCCACCTCGACGACACCGAGGGCGGCGTCGTCGACCTCGACGCCAAGTTCAAGGACGTGCGGCTGTTCATGGACGTCGCCGAGAGGGACACGTGGTCGTGCGAGGAGAGCTGCCGGGACGCGCCGGACTCCACCGTCAAGGCCACCCTGCTCGACAAGAACGAGGCGTTCGAGAAGTTCATGCGGGTCACCGGCGCGCTCATCGAGATGGTCATCGGAACGGCCGACGAGCCGGCGCCGGAGCCGTCAGCTGATGAACACTCGGACGAACTAATACCGGATGTCCAGTTATGATCAATTCATAATGTACTAATCGCTCATGTGACTTCTCATCTCCAT TTTTGATCGATCGTGTTCAGGTATTTTGATTAGGTTAATTAAGGGCCCGTTCAATTTGACGTCATTTTCAACCATACCATTTTTTT TAAAGTTGTCAAAAAAATGTCTACGTTTAGTTTGCTACTAAATTTGATAAATATATAAGAAATCCTGCCA                                                                                                                                                                             ]
[+] EMBL C72022               [                                                                                             CAAGACGCCGCACCCGGACGTTTGCATCACCGTGCTGGGCGCCATCCCGGAGTGCAGGAACACCGGCNACCCGCGCTTCCTCGCCGAGAACGCCGTCCGCTCCGCCGCCACCATCGGCGCGGCGGCGGGCACGTTCGCNCGCNCGGAG TCGANATCGTGAAGGACACCGACATGTGGCAGTNCCTGGACGAGTGCGCGCAGGACATCGAGGAGGCCGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU172439             [                                                                                                                                                                                                                                                                    CCGACATGTGGCAGTGCCTGGACGAGTGCGCGCAGGACATCGAGGAGGCCGTCTCCCACCTCGACGACACCGAGGGCGGCGTCGTCGACCTCGACGCCAAGTTCAAGGACGTGCGGCTGTTCATGGACGTCGCCGAGAGGGACACGTGGTCGTGCGAGGAGAGCTGCCGGGACGCGCCGGACTCCACCGTCAAGGCCACCCTGCTCGACAAGAACGAGGCGTTCGAGAAGTTCATGCGGGTCACCGGCGCGCTCATCGAGATGGTCATCGGAACGGCCGGCGAGCCGGCGCCGGAGCCGTCAGCTGATGAACACTCGGACGAACTAATACCGGATGTCCAGTTATGATCAATTCATAATGTACTAATCGCTCATGTGACTTCTCATCTCCAT TTTTGATCGATCGTGTTCAGGTATTTTGATTAGGTTAATTAAaaa                                                                                                                                                                                                                                                                                             ]
[-] EMBL CA761872             [                                                                                                                                                                                                                                                                                                                                                                                                     gaGCCAAGGGGGACACGTGGTCGTGCGAGGAGAGCTGCCGGGACGCGCCGGACTCCACCGTCAAGGCCACCCTGCTCGACAAGAACGAGGCGTTCGAGAAGTTCATGCGGGTCACCGGCGCGCTCATCGAGATGGTCATCGGATCGGCCGGCGAGCCGGCGCCGGAGCCGTCAGCTGATGAACACTCGGACGAACTAATACCGGATGTCCAGTTATGATCAATTCATAATGTACTAATCGCTCATGTCACTTCTCATCTCCATCTTTTGATCGATCGTGTCCAGGTA TTTGATTAGGTTAATTATGGGTGTGTTCACTTTGATGTCATTTCCAATCATACTATTTTTTTATAAAGTTG CTAAAAAATATCTAAGTTTAGTTTGTTGCTAAATTTGATAAATACATAAGAAATCCTGTCAAAAATTTAGTAACATTGTCATCTTACTAAAATTTTGATATCACCAAAATTTAGTAAGGTTTAGTAAGGTTTATTTTCCATTTCGTCGAATGTTTTGTTTAACCATCAATAAAGTGGTTGATTCGTTCATTAGCTAACTAATAGATCATCTGATTGTAAAAAAAAAAAAAAAAA]
[+] EMBL CA766960             [                                                                                                                                                                                                                                                                                                                                                                                                                        GTCGTGCGAGGAGAGCTGCCGGGACGCGCCGGACTCCACCGTCAAGGCCACCCTGCTCGACAAGAACGAGGCGTTCGAGAAGTTCATGCGGGTCACCGGCGCGCTCATCGAGATGGTCATCGGATCGGCCGGCGAGCCGGCGCCGGAGCCGTCAGCTGATGAACACTCGGACGAACTAATACCGGATGTCCAGTTATGATCAATTCATAATGTACTAATCGCTCATGTCACTTCTCATCTCCATCTTTTGATCGATCGTGTCCAGGTA TTTGATTAGGTTAATTATGGGTGTGTTCACTTTGATGTCATTTCCAATCATACTATTTTTTTATAAAGTTG CTAAAAAATATCTAAGTTTAGTTTGTTGCTAAATTTGATAAATACATAAGAAATCCTGTCAAAAATTTAGTAACATTGTCATCTTACTAAAATTTTGATATCACCAAAATTTAGTAAGGTTTAGTAAGGTTTATTTTCCATTTCGTCGAATGTTTTGTTTAACCATCAATAAAGTGGTTGATTCGNTCATTAGCTAACTAATAGATCATCTGAT                    ]


>consensus_8601#0 AATGGCGGCGACACGCGGCTCCGTGCGGCTCCTCCTCCTGATCCTCCTCCTCCGCCCCGC CGCGGCGGGGAGCCCACTGATGATGACGTGCGCCAAGACGCCGCACCCGGACGTGTGCAT CACCGTGCTGGGCGCCATCCCGGAGTGCAGGAACACCGGCGACCCGCGCGTCCTCGCCGA GAACGCCGTCCGCTCCGCCGCCACCATCGGCGCGGCGGCGGGCACGTTCGCGCGCGCGGA GCTCGACATCGTGAAGGACACCGACATGTGGCAGTGCCTGGACGAGTGCGCGCAGGACAT CGAGGAGGCCGTCTCCCACCTCGACGACACCGAGGGCGGCGTCGTCGACCTCGACGCCAA GTTCAAGGACGTGCGGCTGTTCATGGACGTCGCCGAGAGGGACACGTGGTCGTGCGAGGA GAGCTGCCGGGACGCGCCGGACTCCACCGTCAAGGCCACCCTGCTCGACAAGAACGAGGC GTTCGAGAAGTTCATGCGGGTCACCGGCGCGCTCATCGAGATGGTCATCGGAACGGCCGG CGAGCCGGCGCCGGAGCCGTCAGCTGATGAACACTCGGACGAACTAATACCGGATGTCCA GTTATGATCAATTCATAATGTACTAATCGCTCATGTGACTTCTCATCTCCATTTTTGATC GATCGTGTTCAGGTATTTTGATTAGGTTAATTAAGGGTGTGTTCACTTTGATGTCATTTC CAATCATACTATTTTTTTATAAAGTTGCTAAAAAATATCTAAGTTTAGTTTGTTGCTAAA TTTGATAAATACATAAGAAATCCTGTCAAAAATTTAGTAACATTGTCATCTTACTAAAAT TTTGATATCACCAAAATTTAGTAAGGTTTAGTAAGGTTTATTTTCCATTTCGTCGAATGT TTTGTTTAACCATCAATAAAGTGGTTGATTCGTTCATTAGCTAACTAATAGATCATCTGA TTGTAAAAAAAAAAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)