These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8843#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 925 fasta sequence [GCGGTTGCTATGTCTAGTGAACCAATAGAACAGGAGCCTATTCTGCATCAGTCTCCTTCTCCAAATTGTGAAGTTTTAGTATCTACGACAGACGCCGAATCTGTAGAAAGTGAGCATCACGAGCATTGTGCTTTTTCTCCACATCAAAGCATGTCTGACCCTCCAGACATTGACAGAATCATTG-CTGGTCTTTGCCCTAGCACATCCTCTGTTCATGAGAAGCCTCGGGAAATATCTAGTGAACCAGATGACCCTGATTTAGCCACAACTCCTTCAAATCCTGATATGTCTGATCCTGAGCGTTTTGCTCAACATTACTGTCAGGTATTCCCTCTAGAGGTCAGAAGGGCCCTTTCAAAGAAAAGATCTAATTCATTACTT-AATCATCTAGTCTCCGAGGAATGTTCCGATGAGGAATTTGTGCATGATTTTCCTGATGCGGAGCAAGCACGTGATTGTCAGAAGCCATCTGGCCAGAATATT---GGTAGCAAGAGAAAGAAAGGACACAGGCGTGGCCCTACCCTTTGTGTCAAAGTGTGGACCTTGCCTGAAGGTGTGCGGCTTCCAGTATCCTTGAACAATTCAGGTTTTCCTATTGGAAAAAATGCTGCCATGTTTGGTAACTTTCTGGGCACACTAGCGCGTGATGGAATATTGGCACCTCTTACATATAAAAAATGGAAAAGTATACCAAAGGAGAACAA-GGATGTAATGTGGCATATTATTAAGCTTAAA-TTTTATGTTGCTCCATC-TTCCGAGTCCTTGCTACTGAAATGCATAAGAACAA-AGTGGAGG-AATTGGGAGGTGTAAC-TTAAAACGAAAACCCTTTGATTCTCATATAACTGAAGAGGAACGTCTTGCTGATTGTGATCCTCGTGTCCTAAAAGAACAGTGGCGATTCCTAGGGGCATTTTGGAATACCGAA] [+] EMBL CA757908 [GCGGTTGCTATGTCTAGTGAACCAATAGAACAGGAGCCTATTCTGCATCAGTCTCCTTCTCCAAATTGTGAAGTTTTAGTATCTACGACAGACGCCGAATCTGTAGAAAGTGAGCATCACGAGCATTGTGCTTTTTCTCCACATCAAAGCATGTCTGACCCTCCAGATATTGACAGAATCATTG CTGGTCTTTGCACTAGCACATCCTCTGTTCATGAGAAGCCTCGGGAAATATCTAGTGAACCAGATGACCCTGATTTAGCCACAACTCCTTCAAATCCTGATATGTCTGATCCTGAGCGTTTTGCTCAACATTACTGTCAGGTATTCCCTCTAGAGGTCAGAAGGGCCCTTTCAAAGAAAAGATCTAATTCATTACTTCTATCATCTAGTCTCCGAGGAATGTTCCGATGAGGAATTTGTGCATGATTTTCCTGATGCGGAGCAAGCACGTGATTGTCAGAAGCCATCTGGCCAGAATATT GGTAGCAAGAGAAAGAAAGGACACAGGCGTGGCCCTACCCTTTGTGTCAAAGTGTGGACCTTGCCTGAAGGTGTGCGGCTTCCANTATCCTTG ACAATTCANGGTTTCCTATTGGAAAAAATGCTGCCATGTTTGGTAACTTTCTGGGCACACTANCGCGTGATGGAATATTTGCACCTCTTACATATAANAAATGGAAAAGTTTTCCCAAGGAG ACAAGGGATGTTATGTGGCATATTATTAAGCTTAAATTTTTATGTTGCTCCATCTTTCCGAGTCCTTGCTACTGGAATGCGTAAGAACAAGAG GGAGGAAATGGGGAGGTGTTACTTTAAAACCAAAACCCTTTGA ] [+] EMBL D43152 [ TCTCCTTCTCCAAATTGTGAAGTTTTAGTATCTACGACAGACGCCGAATCTGTAGAAAGTGAGCATCACGAGCATTGTGCTTTTTCTCCACATCAAAGCATGTCTGACCCTCCAGACATTGACAGAATCATTG CTGGTCTTTGCCCTAGCACATCCTCTGTTCATGAGAAGCCTCGGGAAATATCTAGTGAACCAGATGACCCTGATTTAGCCACAACTCCTTCAAATCCTGATATGTCTGATCCTGAGCGTTTTGCTCAACATTACTGTCAGGTATTCCCTCTAGAGGTCAGAAGGGC ] [+] EMBL CB649548 [ GTGAAGCCTTAGTATCTACGACAGACGCCGAATCTGTAGAAAGTGAGCATCACGAGCATTGTGCTTTTTCTCCACATCAAAGCATGTCTGACCCTCCAGACATTGACAGAATCATTG CTGGGCTTTGCCCTAGCACATCCTCTGTTCATGAGAAGCCTCGGGAAATATCTAGTGAACCAGATGACCCTGATTTAGCCACAACTCCTTCAAATCCTGATATGTCTGATCCTGAGCGTTTTGCTCAACATTACTGTCAGGTATTCCCTCTAGAGGTCAGAAGGGCCCTTTCAAAGAAAAGATCTAATTCATTACTT AATCATCTAGTCTCCGAGGAATGTTCCGATGAGGAATTTGTGCATGATTTTCCTGATGCGGAGCAAGCACGTGATTGTCAGAAGCCATCTGGCCAGAATATTGTAGGTAGCAAGAGAAAGAAAGGACACAGGCGTGGCCCTACCCTTTGTGTCAAAGTGTGGACCTTGCCTGAAGGTGTGCGGCTTCCAGTATCCTTGAACAATTCAGGTTTTCCTATTGGAAAAAATGCTGCCATGTTTGGTAACTTTCTGGGCACACTAGCGCGTGATGGAATATTGGCACCTCTTACATATAAAAAATGGAAAAGTATACCAAAGGAGAACAA GGATGTAATGTGGCATATTATTAAGCTTAAA TTTTATGTTGCTCCATC TTCCGAGTCCTTGCTACTGAAATGCATAAAACCAA AGTGGAGG AATT GGAGGTGTAAC TTAAAACGAAA ] [+] EMBL CB649751 [ GTGAAGTTTTATTATCTACGACAGACGCCGAATCTGTAGAAAGTGAGCATCACGAGCATTGTGCTTTTTCTCCACATCAAAGCATGTCTGACCCTCCAGACATTGACAGAATCATTGACTGGTCTTTGCCCTAGCACATCCTCTGTTCATGAGAAGCCTCGGGAAATATCTAGTGAACCAGATGACCCTGATTTAGCCACAACTCCTTCGAATCCTGATATGTCTGATCCTGAGCGTTTTGCTCAACATTACTGTCAGGTATTCCCTCTAGAGGTCAGAAGGGCCCTTTCAAAGAAAAGATCTAATTCATTACTT AATCATCTACTCTCCGAGGAATGTTCCGATGAGGAATTTGTGCATGATTTTCCTGATGCGGAGCAAGCACGTGATTGTCAGAAGCCATCTGGCCAGAATATTGTAGGTAGCAAGAGAAAGAAAGGACACAGGCGTGGCCCTACCCTTTGTGTCAAAGTGTGGACCTTGCCTGAAGGTGTGCGGCTTCCAGGATCCTTGAACAATTCAGGTTTTCCTATTGGAAAAAATGCTGCCATGTTTGGGAACTTTCTGGGCACACTAGCGCGTGATGGAATATTGGCACCTCTTACATATAAAAAATGGAAAAGTATACCAAAGGAGAACAA GGATGTAATGTGGCATATTATTAAGCTTAAA TTTTATGTTGCTCCATC TTCCGAGTCCTTGCTACTGAGATGCATAACAACAA AGTGGAGG AATTG ] [-] EMBL CB673186 [ GCATGTCTGACCCTCCAGACATTGACAGAATCATTG CTGGTCTTTGCCCTAGCACATCCTCTGTTCATGAGAAGCCTCGGGAAATATCTAGTGAACCAGATGACCCTGATTTAGCCACAACTCCTTCAAATCCTGATATGTCTGATCCTGAGCGTTTTGCTCAACATTACTGTCAGGTATTCCCTCTAGAGGTCAGAAGGGCCCTTTCAAAGAAAAGATCTAATTCATTACTT AATCATCTAGTCTCCGAGGAATGTTCCGATGAGGAATTTGTGCATGATTTTCCTGATGCGGAGCAAGCACGTGATTGTCAGAAGCCATCTGGCCAGAATATT GGTAGCAAGAGAAAGAAAGGACACAGGCGTGGCCCTACCCTTTGTGTCAAAGTGTGGACCTTGCCTGAAGGTGTGCGGCTTCCAGTATCCTTGAACAATTCAGGTTTTCCTATTGGAAAAAATGCTGCCATGTTTGGTAACTTTCTGGGCACACTAGCGCGTGATGGAATATTGGCACCTCTTACATATAAAAAATGGAAAAGTATACCAAAGGAGAACAA GGATGTAATGTGGCATATTATTAAGCTTAAA TTTTATGTTGCTCCATC TTCCGAGTCCTTGCTACTGAAATGCATAAGAACAA AGTGGAGG AATT GGAGGTGTAAC TTAAAACGAAAACACTATGATTCTCATATAACTGAAGAGGAACGTCTTGCTGATTGTGATCCTCGTGTCCTAAAAGAACAGTGGCGATTCCTAGGGGCATTTTGGAATACCGAA] consensusID : consensus_8843#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 676 fasta sequence [AGGGAACCAGATGACCCGGATTTAGCCACAACTCCTTCAAATCCTGATATGTCTGATCCTGAGCGTTTTGCTCAACATTACTGTCAGGTATTCCCTCTAGAGGTCAGAAGGGCCCTTTCAAAGAAAAGATCTAATTCATTACTTAATCATCTAGTCTCCGAGGAATGTTCCGATGAGGAATTTGTGCATGATTTTCCTGATGCGGAGCAAGCACGTGATTGTCAGAAGCCATCTGGCCAGAATATTGGTAGCAAGAGAAAGAAAGGACACAGGCGTGGCCCTACCCTTTGTGTCAAAGTGTGGACCTTGCCTGAAGGTGTGCGGCTTCCAGTATCCTTGAACAATTCAGGTTTTCCTATTGGAAAAAATGCTGCCATGTTTGGTAACTTTCTGGGCACACTAGCGCGTGATGGAATATTGGCACCTCTTACATATAAAAAATGGAAAAGTATACCAAAGGAGAACAAGGATGTAATGTGGCATATTATTAAGCTTAAATTTTATGTTGCTCCATCTTCCGAGTCCTTGCTACTGAAATGCATAAGAACAAAGTGGAGGAATTGGACACCCCACCTCCAGGATCTCGTCGGGTTCCTCGTCAGCTGCTGCCACCGCCATCGCCACGCGGCGGCGGCGGCGGCGCCATTGCCTTCAGCCCTCAGCGCAGTAGCGTCGG] [-] EMBL CB673185 [AGGGAACCAGATGACCCGGATTTAGCCACAACTCCTTCAAATCCTGATATGTCTGATCCTGAGCGTTTTGCTCAACATTACTGTCAGGTATTCCCTCTAGAGGTCAGAAGGGCCCTTTCAAAGAAAAGATCTAATTCATTACTTAATCATCTAGTCTCCGAGGAATGTTCCGATGAGGAATTTGTGCATGATTTTCCTGATGCGGAGCAAGCACGTGATTGTCAGAAGCCATCTGGCCAGAATATTGGTAGCAAGAGAAAGAAAGGACACAGGCGTGGCCCTACCCTTTGTGTCAAAGTGTGGACCTTGCCTGAAGGTGTGCGGCTTCCAGTATCCTTGAACAATTCAGGTTTTCCTATTGGAAAAAATGCTGCCATGTTTGGTAACTTTCTGGGCACACTAGCGCGTGATGGAATATTGGCACCTCTTACATATAAAAAATGGAAAAGTATACCAAAGGAGAACAAGGATGTAATGTGGCATATTATTAAGCTTAAATTTTATGTTGCTCCATCTTCCGAGTCCTTGCTACTGAAATGCATAAGAACAAAGTGGAGGAATTGGACACCCCACCTCCAGGATCTCGTCGGGTTCCTCGTCAGCTGCTGCCACCGCCATCGCCACGCGGCGGCGGCGGCGGCGCCATTGCCTTCAGCCCTCAGCGCAGTAGCGTCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8843#0 GCGGTTGCTATGTCTAGTGAACCAATAGAACAGGAGCCTATTCTGCATCAGTCTCCTTCT 60 consensus_8843#1 ------------------------------------------------------------ consensus_8843#0 CCAAATTGTGAAGTTTTAGTATCTACGACAGACGCCGAATCTGTAGAAAGTGAGCATCAC 120 consensus_8843#1 ------------------------------------------------------------ consensus_8843#0 GAGCATTGTGCTTTTTCTCCACATCAAAGCATGTCTGACCCTCCAGACATTGACAGAATC 180 consensus_8843#1 ------------------------------------------------------------ consensus_8843#0 ATTGCTGGTCTTTGCCCTAGCACATCCTCTGTTCATGAGAAGCCTCGGGAAATATCTAGT 240 consensus_8843#1 ---------------------------------------------------------AGG 3 ** consensus_8843#0 GAACCAGATGACCCTGATTTAGCCACAACTCCTTCAAATCCTGATATGTCTGATCCTGAG 300 consensus_8843#1 GAACCAGATGACCCGGATTTAGCCACAACTCCTTCAAATCCTGATATGTCTGATCCTGAG 63 ************** ********************************************* consensus_8843#0 CGTTTTGCTCAACATTACTGTCAGGTATTCCCTCTAGAGGTCAGAAGGGCCCTTTCAAAG 360 consensus_8843#1 CGTTTTGCTCAACATTACTGTCAGGTATTCCCTCTAGAGGTCAGAAGGGCCCTTTCAAAG 123 ************************************************************ consensus_8843#0 AAAAGATCTAATTCATTACTTAATCATCTAGTCTCCGAGGAATGTTCCGATGAGGAATTT 420 consensus_8843#1 AAAAGATCTAATTCATTACTTAATCATCTAGTCTCCGAGGAATGTTCCGATGAGGAATTT 183 ************************************************************ consensus_8843#0 GTGCATGATTTTCCTGATGCGGAGCAAGCACGTGATTGTCAGAAGCCATCTGGCCAGAAT 480 consensus_8843#1 GTGCATGATTTTCCTGATGCGGAGCAAGCACGTGATTGTCAGAAGCCATCTGGCCAGAAT 243 ************************************************************ consensus_8843#0 ATTGGTAGCAAGAGAAAGAAAGGACACAGGCGTGGCCCTACCCTTTGTGTCAAAGTGTGG 540 consensus_8843#1 ATTGGTAGCAAGAGAAAGAAAGGACACAGGCGTGGCCCTACCCTTTGTGTCAAAGTGTGG 303 ************************************************************ consensus_8843#0 ACCTTGCCTGAAGGTGTGCGGCTTCCAGTATCCTTGAACAATTCAGGTTTTCCTATTGGA 600 consensus_8843#1 ACCTTGCCTGAAGGTGTGCGGCTTCCAGTATCCTTGAACAATTCAGGTTTTCCTATTGGA 363 ************************************************************ consensus_8843#0 AAAAATGCTGCCATGTTTGGTAACTTTCTGGGCACACTAGCGCGTGATGGAATATTGGCA 660 consensus_8843#1 AAAAATGCTGCCATGTTTGGTAACTTTCTGGGCACACTAGCGCGTGATGGAATATTGGCA 423 ************************************************************ consensus_8843#0 CCTCTTACATATAAAAAATGGAAAAGTATACCAAAGGAGAACAAGGATGTAATGTGGCAT 720 consensus_8843#1 CCTCTTACATATAAAAAATGGAAAAGTATACCAAAGGAGAACAAGGATGTAATGTGGCAT 483 ************************************************************ consensus_8843#0 ATTATTAAGCTTAAATTTTATGTTGCTCCATCTTCCGAGTCCTTGCTACTGAAATGCATA 780 consensus_8843#1 ATTATTAAGCTTAAATTTTATGTTGCTCCATCTTCCGAGTCCTTGCTACTGAAATGCATA 543 ************************************************************ consensus_8843#0 AGAACAAAGTGGAGGAATTGGGAGGTGTAACTTAAAACGAAAACCCTTTGATTCTCATAT 840 consensus_8843#1 AGAACAAAGTGGAGGAATTGGACACCCCACCTC----CAGGATCTCGTCGGGTTCCTCGT 599 ********************* * ** * * * * * * * * * consensus_8843#0 AACTGAAGAGGAACGTCTTGCTGATTGTGATCCTCGTGTCCTAAAAGAACAGTGGCGATT 900 consensus_8843#1 CAGCTGCTGCCACCGCCATCGCCAC-GCGGCGGCGGCGGC--GGCGCCATTGCCTTCAGC 656 * * ** * * * * * * * * * * * consensus_8843#0 CCTAGGGGCATTTTGGAATACCGAA 925 consensus_8843#1 CCTCAGCGCAGT----AGCGTCGG- 676 *** * *** * * ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||