These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8921#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1168 fasta sequence [TTCCTCGAGCACTGTTGGCCTACTGGCTCCTACTCGACCTCGCGCTCGCTCGCTCGCCCTACAGGCCACCGCCGCACCAGGGGGGGCAGCGAGCGAGCCCGCGAGGTAGTCGGCGACGACCAGGAGGGGGACTGGGATGGGTTGCTGCGGGTCGTCGCTGCAGGCCGGGACCCACCCGGAGAAGCCGCCGGGGATGGCGGCGCCGCCGCAGCGCCCGTCCTTCTCCCTGAACCAGCACCAGGCGCCGGGGTCGGCGGCGGCGCAGGGCGTGGGGAGAGGGGAGGTCCCGGCGTTCGCGGAGTTCTCGCTGGCGGAGCTCCGTGCCGCCACGGGCGGGTTCGCCGCGGAGAACATCGTGTCCGAGAGCGGCGAGAAGGCCCCGAATTTCGTGTACAGGGGCCGCCTCCAGCGCACCCGCCGCGCGATCGCCGTCAAGAAGTTCCCCAAGATGGCGTGGCCCGATCCCAAGCAGTTCGAGGAGGAGGCCAAGGGGGTGGGGAAGCTGCGCCACCGCCGCTTGGCGAACCTCATCGGCTACTGCTGCGATGGGGACGAGCGGCTTCTCGTCGCCGAGTTCATGCCCAACGACACCCTAGCCAAGCACGTCTTCCATTGGGAAAACCAGACTATCGAATGGGCTATGCGTTTAAGAGTTGCACACCACATTGCTGAAGCACTTGACTACTGCAGTAGCAATGAACGGCCTTTATATCATGACTTAAATGCATATAGGGTCCTTTTTGATGAGAATGGTGATCCTCGTCTTTCATGCTTTGGCCTGATGAAAAACAGCAGGGATGGCAAAAGTTATAGCACAAACCTTGCATATACACCTCCAGAGTATTTGAGAAATGGTAGAGTTACTCCAGAAAGTGTCATATTCAGCTTTGGTACTGTTCTCCTCGACCTTCTAAGTGGAAAGCGCATACCTCCTTCCCATGCTCTCGATATGATAAGAGGCAAAAACATTCAAGTGCTCTTGGACTCACATTTGGAAGGAAAATACTCTACAGAAGAGGCAACTGCTTTGGTAGATCTTGCTTCTCAGTGTTTACAGTATGAACCTAGGGACCGTCCCAATACAGGAAAGCTGGTCTCCATACTTGATCCTTTGCAAACAAAACTAGAGGTGCCTTCCTATGAGATGCTTGGCATTCCAAAGCATGAA] [+] EMBL AK104997 [TTCCTCGAGCACTGTTGGCCTACTGGCTCCTACTCGACCTCGCGCTCGCTCGCTCGCCCTACAGGCCACCGCCGCACCAGGGGGGGCAGCGAGCGAGCCCGCGAGGTAGTCGGCGACGACCAGGAGGGGGACTGGGATGGGTTGCTGCGGGTCGTCGCTGCAGGCCGGGACCCACCCGGAGAAGCCGCCGGGGATGGCGGCGCCGCCGCAGCGCCCGTCCTTCTCCCTGAACCAGCACCAGGCGCCGGGGTCGGCGGCGGCGCAGGGCGTGGGGAGAGGGGAGGTCCCGGCGTTCGCGGAGTTCTCGCTGGCGGAGCTCCGTGCCGCCACGGGCGGGTTCGCCGCGGAGAACATCGTGTCCGAGAGCGGCGAGAAGGCCCCGAATTTCGTGTACAGGGGCCGCCTCCAGCGCACCCGCCGCGCGATCGCCGTCAAGAAGTTCCCCAAGATGGCGTGGCCCGATCCCAAGCAGTTCGAGGAGGAGGCCAAGGGGGTGGGGAAGCTGCGCCACCGCCGCTTGGCGAACCTCATCGGCTACTGCTGCGATGGGGACGAGCGGCTTCTCGTCGCCGAGTTCATGCCCAACGACACCCTAGCCAAGCACGTCTTCCATTGGGAAAACCAGACTATCGAATGGGCTATGCGTTTAAGAGTTGCACACCACATTGCTGAAGCACTTGACTACTGCAGTAGCAATGAACGGCCTTTATATCATGACTTAAATGCATATAGGGTCCTTTTTGATGAGAATGGTGATCCTCGTCTTTCATGCTTTGGCCTGATGAAAAACAGCAGGGATGGCAAAAGTTATAGCACAAACCTTGCATATACACCTCCAGAGTATTTGAGAAATGGTAGAGTTACTCCAGAAAGTGTCATATTCAGCTTTGGTACTGTTCTCCTCGACCTTCTAAGTGGAAAGCGCATACCTCCTTCCCATGCTCTCGATATGATAAGAGGCAAAAACATTCAAGTGCTCTTGGACTCACATTTGGAAGGAAAATACTCTACAGAAGAGGCAACTGCTTTGGTAGATCTTGCTTCTCAGTGTTTACAGTATGAACCTAGGGACCGTCCCAATACAGGAAAGCTGGTCTCCATACTTGATCCTTTGCAAACAAAACTAGAGGTGCCTTCCTATGAGATGCTTGGCATTCCAAAGCATGAA] [+] EMBL AK122069 [ TACTCGACCTCGCGCTCGCTCGCTCGCCCTACAGGCCACCGCCGCACCAGGGGGGGCAGCGAGCGAGCCCGCGAGGTAGTCGGCGACGACCAGGAGGGGGACTGGGATGGGTTGCTGCGGGTCGTCGCTGCAGGCCGGGACCCACCCGGAGAAGCCGCCGGGGATGGCGGCGCCGCCGCAGCGCCCGTCCTTCTCCCTGAACCAGCACCAGGCGCCGGGGTCGGCGGCGGCGCAGGGCGTGGGGAGAGGGGAGGTCCCGGCGTTCGCGGAGTTCTCGCTGGCGGAGCTCCGTGCCGCCACGGGCGGGTTCGCCGCGGAGAACATCGTGTCCGAGAGCGGCGAGAAGGCCCCGAATTTCGTGTACAGGGGCCGCCTCCAGCGCACCCGCCGCGCGATCGCCGTCAAGAAGTTCCCCAAGATGGCGTGGCCCGATCCCAAGCAGTTCGAGGAGGAGGCCAAGGGGGTGGGGAAGCTGCGCCACCGCCGCTTGGCGAACCTCATCGGCTACTGCTGCGATGGGGACGAGCGGCTTCTCGTCGCCGAGTTCATGCCCAACGACACCCTAGCCAAGCACGTCTTCCATTGGGAAAACCAGACTATCGAATGGGCTATGCGTTTAAGAGTTGCACACCACATTGCTGAAGCACTTGACTACTGCAGTAGCAATGAACGGCCTTTATATCATGACTTAAATGCATATAGGGTCCTTTTTGATGAGAATGGTGATCCTCGTCTTTCATGCTTTGGCCTGATGAAAAACAGCAGGGATGGCAAAAGTTATAGCACAAACCTTGCATATACACCTCCAGAGTATTTGAGAAATGGTAGAGTTACTCCAGAAAGTGTCATATTCAGCTTTGGTACTGTTCTCCTCGACCTTCTAAGTGGAAAGCGCATACCTCCTTCCCATGCTCTCGATATGATAAGAGGCAAAAACATTCAAGTGCTCTTGGACTCACATTTGGAAGGAAAATACTCTACAGAAGAGGCAACTGCTTTGGTAGATCTTGCTTCTCAGTGTTTACAGTATGAACCTAGGGACCGTCCCAATACAGGAAAGCTGGTCTCCATACTTGATCCTTTGCAAACAAAACTAGAGGTGCCTTCCTATGAGATGCTTGGCATTCCAAAGCATGAA] [+] EMBL CB632779 [ TCGCCCTACAGGCCACCGCCGCACCAGGGGGGGCAGCGAGCGAGCCCGCGAGGTAGTCGGCGACGACCAGGAGGGGGACTGGGATGGGTTGCTGCGGGTCGTCGCTGCAGGCCGGGACCCACCCGGAGAAGCCGCCGGGGATGGCGGCGCCGCCGCAGCGCCCGTCCTTCTCCCTGAACCAGCACCAGGCGCCGGGGTCGGCGGCGGCGCAGGGCGTGGGGAGAGGGGAGGTCCCGGCGTTCGCGGAGTTCTCGCTGGCGGAGCTCCGTGCCGCCACGGGCGGGTTCGCCGCGGAGAACATCGTGTCCGAGAGCGGCGAGAAGGCCCCGAATTTCGTGTACAGGGGCCGCCTCCAGCGCACCCGCCGCGCGATCGCCGTCAAGAAGTTCCCCAAGATGGCGTGGCCCGATCCCAAGCAGTTCGAGGAGGAGGCCAAGGGGGTGGGGAAGCTGCGCCACCGCCGCTTGGCGAACCTCATCGGCTACTGCTGCGATGGGGACGAGCGGCTTCTCGTCGCCGAGTTCATGCCCAACGACACCCTAGCCAAGCACGTCTTCCATTGGGAAAACCAGACTATCGAATGGGCTATGCGTTTAAGAGTTGCACACCACATTGCTGAAGCACTTGACTACTGCAGTAGCAATGAACGGCCTTTATATCATGACTTAAATGCATATAGGGTCCTTTTTGATGAGAATGGTGATCCTCG ] [+] EMBL CB636092 [ CCTACAGGCCACCGCCGCACCAGGGGGGGCAGCGAGCGAGCCCGCGAGGTAGTCGGCGACGACCAGGAGGGGGACTGGGATGGGTTGCTGCGGGTCGTCGCTGCAGGCCGGGACCCACCCGGAGAAGCCGCCGGGGATGGCGGCGCCGCCGCAGCGCCCGTCCTTCTCCCTGAACCAGCACCAGGCGCCGGGGTCGGCGGCGGCGCAGGGCGTGGGGAGA ] consensusID : consensus_8921#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 739 fasta sequence [ACTTTCCGGCGCGTCGAAAGCAACCACTCCTCCTACTCGACCTCGCGCTCGCTCGCTCGCCCTACAGGCCACCGCCGCACCAGGGGGGGCAGCGAGCGAGCCCGCGAGGTAGTCGGCGACGACCAGGAGGGGGACTGGGATGGGTTGCTGCGGGTCGTCGCTGCAGGCCGGGACCCACCCGGAGAAGCCGCCGGGGATGGCGGCGCCGCCGCAGCGCCCGACCTTCTCCCTGAACCAGCACCATGCGCCGGGGTCGGCGGCGGCGCAGGGCGTGGGGAGAGGGGAGGTCCCGGCGTTCGCGGAGTTCTCGCTGGGGGAGCTCCGTGCCGCCACGGGCGGGTTCGCCGCGGAGAACATCGTGTCCGAGAGCGGCGAGAAGGCCCCAAATTTCGTGTACAGGGGCCGCCTCCATCGCACCCGCCGCGCGATCGCCGTCAAGAAGGTCCCCAAGATGGCGTGGCCCGATCCCGAGCAGTTCGAGGAGGAGGCCAAGGGGGTGGGGAAACTGCGCCACCGCCGCTTGGCGAACCTCATCGGCTACTGCTGCGATGGGGACGAGCGGCTTCTCGTCGCCGAGTTCATGCCCAACGACACCCTAGCCAAGCACGTCTTCCATTGGGAAAACCAGACTATCGAATGGGCTATGCGTTTAACAGTTGCACACCACATTGCTGAAGCACTTGACTACTGCAGTAGCAATGAACGGCCTTTATATCATGACTTAAATGCATATAGGGCC] [+] EMBL CB668976 [ CTTTCCGGCGCGTCGAAAGCAACCACTCCTCCTACTCGACCTCGCGCTCGCTCGCTCGCCCTACAGGCCACCGCCGCACCAGGGGGGGCAGCGAGCGAGCCCGCGAGGTAGTCGGCGACGACCAGGAGGGGGACTGGGATGGGTTGCTGCGGGTCGTCGCTGCAGGCCGGGACCCACCCGGAGAAGCCGCCGGGGATGGCGGCGCCGCCGCAGCGCCCGACCTTCTCCCTGAACCAGCACCATGCGCCGGGGTCGGCGGCGGCGCAGGGCGTGGGGAGAGGGGAGGTCCCGGCGTTCGCGGAGTTCTCGCTGGGGGAGCTCCGTGCCGCCACGGGCGGGTTCGCCGCGGAGAACATCGTGTCCGAGAGCGGCGAGAAGGCCCCAAATTTCGTGTACAGGGGCCGCCTCCATCGCACCCGCCGCGCGATCGCCGTCAAGAAGGTCCCCAAGATGGCGTGGCCCGATCCCGAGCAGTTCGAGGAGGAGGCCAAGGGGGTGGGGAAACTGCGCCACCGCCGCTTGGCGAACCTCATCGGCTACTGCTGCGATGGGGACGAGCGGCTTCTCGTCGCCGAGTTCATGCCCAACGACACCCTAGCCAAGCACGTCTTCCATTGGGAAAACCAGACTATCGAATGGGCTATGCGTTTAACAGTTGCACACCACATTGCTGAAGCACT ] [+] EMBL CB669011 [aaaggCCGCCGCGTCGAAAGCAACCACTCCTCCTACTCGACCTCGCGCTCGCTCGCTCGCCCTACAGGCCACCGCCGCACCAGGGGGGGCAGCGAGCGAGCCCGCGAGGTAGTCGGCGACGACCAGGAGGGGGACTGGGATGGGTTGCTGCGGGTCGTCGCTGCAGGCCGGGACCCACCCGGAGAAGCCGCCGGGGATGGCGGCGCCGCCGCAGCGCCCGTCCTTCTCCCTGAACCAGCACCAGGCGCCGGGGTCGGCGGCGGCGCAGGGCGTGGGGAGAGGGGAGGTCCCGGCGTTCGCGGAGTTCTCGCTGGCGGAGCTCCGTGCCGCCACGGGCGGGTTCGCCGCGGAGAACATCGTGTCCGAGAGCGGCGAGAAGGCCCCGAATTTCGTGTACAGGGGCCGCCTCCAGCGCACCCGCCGCGCGATCGCCGTCAAGAAGTTCCCCAAGATGGCGTGGCCCGATCCCAAGCAGTTCGAGGAGGAGGCCAAGGGGGTGGGGAAGCTGCGCCACCGCCGCTTGGCGAACCTCATCGGCTACTGCTGCGATGGGGACGAGCGGCTTCTCGTCGCCGAGTTCATGCCCAACGACACCCTAGCCAAGCACGTCTTCCATTGGGAAAACCAGACTATCGAATGGGCTATGCGTTTAAGAGTTGCACACCACATTGCTGAAGCACTTGACTACTGCAGTAGCAATGAACGGCCTTTATATCATGACTTAAATGCATATAGGGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8921#0 --TTCCTCGAGCACTGTTGGC--CTACTGGCTCCTACTCGACCTCGCGCTCGCTCGCTCG 56 consensus_8921#1 ACTTTCCGGCGCGTCGAAAGCAACCACTC-CTCCTACTCGACCTCGCGCTCGCTCGCTCG 59 ** * * ** * ** * *** ****************************** consensus_8921#0 CCCTACAGGCCACCGCCGCACCAGGGGGGGCAGCGAGCGAGCCCGCGAGGTAGTCGGCGA 116 consensus_8921#1 CCCTACAGGCCACCGCCGCACCAGGGGGGGCAGCGAGCGAGCCCGCGAGGTAGTCGGCGA 119 ************************************************************ consensus_8921#0 CGACCAGGAGGGGGACTGGGATGGGTTGCTGCGGGTCGTCGCTGCAGGCCGGGACCCACC 176 consensus_8921#1 CGACCAGGAGGGGGACTGGGATGGGTTGCTGCGGGTCGTCGCTGCAGGCCGGGACCCACC 179 ************************************************************ consensus_8921#0 CGGAGAAGCCGCCGGGGATGGCGGCGCCGCCGCAGCGCCCGTCCTTCTCCCTGAACCAGC 236 consensus_8921#1 CGGAGAAGCCGCCGGGGATGGCGGCGCCGCCGCAGCGCCCGACCTTCTCCCTGAACCAGC 239 ***************************************** ****************** consensus_8921#0 ACCAGGCGCCGGGGTCGGCGGCGGCGCAGGGCGTGGGGAGAGGGGAGGTCCCGGCGTTCG 296 consensus_8921#1 ACCATGCGCCGGGGTCGGCGGCGGCGCAGGGCGTGGGGAGAGGGGAGGTCCCGGCGTTCG 299 **** ******************************************************* consensus_8921#0 CGGAGTTCTCGCTGGCGGAGCTCCGTGCCGCCACGGGCGGGTTCGCCGCGGAGAACATCG 356 consensus_8921#1 CGGAGTTCTCGCTGGGGGAGCTCCGTGCCGCCACGGGCGGGTTCGCCGCGGAGAACATCG 359 *************** ******************************************** consensus_8921#0 TGTCCGAGAGCGGCGAGAAGGCCCCGAATTTCGTGTACAGGGGCCGCCTCCAGCGCACCC 416 consensus_8921#1 TGTCCGAGAGCGGCGAGAAGGCCCCAAATTTCGTGTACAGGGGCCGCCTCCATCGCACCC 419 ************************* ************************** ******* consensus_8921#0 GCCGCGCGATCGCCGTCAAGAAGTTCCCCAAGATGGCGTGGCCCGATCCCAAGCAGTTCG 476 consensus_8921#1 GCCGCGCGATCGCCGTCAAGAAGGTCCCCAAGATGGCGTGGCCCGATCCCGAGCAGTTCG 479 *********************** ************************** ********* consensus_8921#0 AGGAGGAGGCCAAGGGGGTGGGGAAGCTGCGCCACCGCCGCTTGGCGAACCTCATCGGCT 536 consensus_8921#1 AGGAGGAGGCCAAGGGGGTGGGGAAACTGCGCCACCGCCGCTTGGCGAACCTCATCGGCT 539 ************************* ********************************** consensus_8921#0 ACTGCTGCGATGGGGACGAGCGGCTTCTCGTCGCCGAGTTCATGCCCAACGACACCCTAG 596 consensus_8921#1 ACTGCTGCGATGGGGACGAGCGGCTTCTCGTCGCCGAGTTCATGCCCAACGACACCCTAG 599 ************************************************************ consensus_8921#0 CCAAGCACGTCTTCCATTGGGAAAACCAGACTATCGAATGGGCTATGCGTTTAAGAGTTG 656 consensus_8921#1 CCAAGCACGTCTTCCATTGGGAAAACCAGACTATCGAATGGGCTATGCGTTTAACAGTTG 659 ****************************************************** ***** consensus_8921#0 CACACCACATTGCTGAAGCACTTGACTACTGCAGTAGCAATGAACGGCCTTTATATCATG 716 consensus_8921#1 CACACCACATTGCTGAAGCACTTGACTACTGCAGTAGCAATGAACGGCCTTTATATCATG 719 ************************************************************ consensus_8921#0 ACTTAAATGCATATAGGGTCCTTTTTGATGAGAATGGTGATCCTCGTCTTTCATGCTTTG 776 consensus_8921#1 ACTTAAATGCATATAGGGCC---------------------------------------- 739 ****************** * consensus_8921#0 GCCTGATGAAAAACAGCAGGGATGGCAAAAGTTATAGCACAAACCTTGCATATACACCTC 836 consensus_8921#1 ------------------------------------------------------------ consensus_8921#0 CAGAGTATTTGAGAAATGGTAGAGTTACTCCAGAAAGTGTCATATTCAGCTTTGGTACTG 896 consensus_8921#1 ------------------------------------------------------------ consensus_8921#0 TTCTCCTCGACCTTCTAAGTGGAAAGCGCATACCTCCTTCCCATGCTCTCGATATGATAA 956 consensus_8921#1 ------------------------------------------------------------ consensus_8921#0 GAGGCAAAAACATTCAAGTGCTCTTGGACTCACATTTGGAAGGAAAATACTCTACAGAAG 1016 consensus_8921#1 ------------------------------------------------------------ consensus_8921#0 AGGCAACTGCTTTGGTAGATCTTGCTTCTCAGTGTTTACAGTATGAACCTAGGGACCGTC 1076 consensus_8921#1 ------------------------------------------------------------ consensus_8921#0 CCAATACAGGAAAGCTGGTCTCCATACTTGATCCTTTGCAAACAAAACTAGAGGTGCCTT 1136 consensus_8921#1 ------------------------------------------------------------ consensus_8921#0 CCTATGAGATGCTTGGCATTCCAAAGCATGAA 1168 consensus_8921#1 -------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||