These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8934#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 785 fasta sequence [ACATATTCCAACAATGGCAAGCAAACGGGCAATGAACTCTGCCTTGTTCTTTGCATCAGTTATTTTGGTCTTGGCTTCTGCCGTCAACGGGGGACTAGTGCTACATGGCCATAGCCCATGCCTAGCCACGGCGCCAACCCCGACCGAAACTCCAGCCCCAGCACCAGCCCTGGTGGTGCCACCGACGCCCGCACCAACTCCGGTCCCGACACCATCACCAGCGCCGCCTCCCAAGTGCCCGCTGCCGTTAGCTGATCTTGGTGTGTGCCTTAATGTTGCTCTTGGCAACCAGCTCTTGAACCA-GCAGTGCTGCTCGCAACTCTCCAGCCTCCCGAGCGACACCGCCGCTTTCTGCCTTTGCGAGGCCATCAAGGTGAAAGCCCTCGTCAATCTGAAGGTCAATGTCCCCAACATCCTAAAAGCATGCGGCAAGGTTTCCGCTGTAACTTGTGTTAATTAATCAGTACGTTGAGAGATAGCGTGCATGCATATATACGTAAGTATACGTATGTATGTACATGCTATATATAGGCATGCAGCATCTATATATGTTGCGTGTTTTCCTCTACATATATGCTGTATTAAACTTGGATGACCCAATATATATCTGCCAGCAGCGTACGTGCCGTTCTTCATTGAGGTAGCTATAAGCTAGGGTCTTAATATCCATGTATGTTTAAGAATAATAAAGTTATAAGATCTGGGACTGTGCTATAAGTGTGTGCACGCGCACACACACACATGACTTGATCCTATTACGCGTTAAAAAAAAAATTAAAAAAAAA] [+] EMBL CF279586 [ACATATTCCAACAATGGCAAGCAAACGGGCAATGAACTCTGCCTTGTTCTTTGCATCAGTTATTTTGGTCTTGGCTTCTGCCGTCAACGGGGGACTAGTGCTACATGGCCATAGCCCATGCCTAGCCACGGCGCCAACCCCGACCGAAACTCCAGCCCCAGCACCAGCCCTGGTGGTGCCACCGACGCCCGCACTTTCTCCGGTCCCGACACCATCACCAGCGCCGCCTCCCAAGTGCCCGCTGCCGTTAGCTGATCTTGGTGTGTGCCTTAATGTTGCTCTTGGCAACCAGCTCTTGAACCA GCAGTGCTGCTCGCAACTCTCCAGCCTCCCGAGCGACACCGCCGCTTTCTGCCTTTGCGAGGCCATCAAGGTGAAAGCCCTCGTCAATCTGAAGGTCAATGTCCCCAACATCCTAAAAGCATGCGGCAAGGTTTCCGCTGTAACTTGTGTTAATTAATCAGTACGTTGAGAGATAGCGTGCATGCATATATACGTAAGTATACGTATGTATGTACATGCTATATATAGGCATGCAGCATCTAT ] [+] EMBL CF302618 [ CAATGGCAAGCAAACGGGCAATGAACTCTGCCTTGTTCTTTGCATCAGTTATTTTGGTCTTGGCTTCTGCCGTCAACGGGGGACTAGTGCTACATGGCCATAGCCCATGCCTAGCCACGGCGCCAACCCCGACCGAAACTCCAGCCCCAGCACCAGCCCTGGTGGTGCCACCGACGCCCGCACCAACTCCGGTCCCGACACCATCACCAGCGCCGCCTCCCAAGTGCCCGCTGCCGTTAGCTGATCTTGGTGTGTGCCTTAGTGTTGCTCTTGGCAACCAGCTCTTGAACCA GCAGTGCTGCTCGCAACTCTCCAGCCTCCCGAGCGACACCGCCGCTTTCTGCCTTTGCGAGGCCATCAAGGTGAAAGCCCTCGTCAATCTGAAGGTCAATGTCCCCAACATCCTAAAAGCATGCGGCAAGGTTTCCGCTGTAACTTGTGTTAATTAATCAGTACGTTGAGAGATAGCGTGCATGCATATATACGTAAGTATACGTATGTATGTAC ] [+] EMBL BF430490 [ AACTCTGCCTTGTTCTTTGCATCAGTTATTTTGGTCTTGGCTTCTGCCGTCAACGGGGGACTAGTACTACATGGCCATAGCCCATGCCTAGGCACGGCGCCAACCCCGACCGAAACTCCAGCCCCAGCACCAGCCCTGGTGGTGCCACCGACGCCCGCACCAACTCCGGTCCCAACACCATCACCAGCGCCGCCTCCCAAGTGCCCGCTGCCGTTAGCTGATCTTGGTGTGTGCCTTAATGTTGCTCTTGGCAACCAGCTCTTGAACCA GCAGTGCTGCTCGCAACTCTCCAGCCTCCCGAGCGACACCGCCGCTTTCTGCCTTTGCGAGGCCATCAAGGTGAAAGCCCTCGTCAATCTGAAGGTCAATGTCCCCAACATCCTAAAAGCATGCGGCAAGGTTTCCGCTGTAACTTGTGTTAATTAATCAGTACGTTGAGAGATAGCGTGCATGCAAATATACGTAAGTATACGTATGTATGTACATGCTATATATAGGCATGCAGCATCTATATATGTTGCGTGTTTTCCTCTACATATATGCTGTATTAAACTTGGATGACCCAATATATATCTGCCAGCAGCGTACGTGCCGTTCTTCATTGAGGTAGCTATAAGCTAGGGTCTTAATATCCATGTATGTTTAAGAATAATAAAGTTATAAGATCTGGGACTGTGCTATAA ] [+] EMBL BI798776 [ TGCCCCCT CCCTTACCTGATCTTGGTGTGTCCCTTAATGTTGCTCTTGGCAACCAGCTCTTGAACCACGCAGTGCTGCTCGCAACTCT CAGCCTCCCGAGCGACACCGCCGCTTTCTGCCTTTGCGAGGCCATCAAGGTGAAAGCCCTCGTC ATTTGAAGGTCAATGTCCCCAACATCCTAAAAGCATGCGGCAAGGTTTCCGCTGTAACTTGTGTTAATTAATCAGTACGTTGAGAGATAGCGTGCATGCAAATATACGTAAGTATACGTATGTATGTACATGCTATATATAGGCATGCAGCATCTATATATGTTGCGTGTTTTCCTCTACATATATGCTGTATTAAACTTGGATGACCCAATATATATCTGCCAGCAGCGTACGTGCCGTTCTTCATTGAGGTAGCTATAAGCTAGGGTCTTAATATCCATGTATGTTTAAGAATAATAAAGTTATAAGATCTGGGACTGTGCTATATGTGTGTGCACGCGCACACACACACATGACTTGATCCTATTACGCGTTAAAAAAAAAATTAAAAAAAAA] consensusID : consensus_8934#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 420 fasta sequence [CATCAAGGTGAAAGCCCTCGTCAATCTGAAGGTCAATGTCCCCAACATCCTAAAAGCATGCGGCAAGGTTTCCGCTGTAACTTGTGTTAATTAATCAGTACGTTGAGAGATAGCGTGCATGCATATATACGTAAGTATACGTATGTATGTACATGCTATATATAGGCATGCAGCATCTATATATGTTGCGTGTTTGCCTCTACATATATGCTGTATTAAACTTGGATGACCCAATATATATCTGCCAGCAGCGTGCGTGCGCGTACGTGCCGTTCTTCATTGAGGTAGCTATAAGCTAGGGTCTTAATATCCATGTATGTTTAAGAATAATAAAGTTATAAGATCTGGGACTGTGCTATATGTGTGTGCACGCGCACACACACNACATGACTTGATCATATTACGCGTTAAAAAAAAAAA] [-] EMBL CF302617 [CATCAAGGTGAAAGCCCTCGTCAATCTGAAGGTCAATGTCCCCAACATCCTAAAAGCATGCGGCAAGGTTTCCGCTGTAACTTGTGTTAATTAATCAGTACGTTGAGAGATAGCGTGCATGCATATATACGTAAGTATACGTATGTATGTACATGCTATATATAGGCATGCAGCATCTATATATGTTGCGTGTTTGCCTCTACATATATGCTGTATTAAACTTGGATGACCCAATATATATCTGCCAGCAGCGTGCGTGCGCGTACGTGCCGTTCTTCATTGAGGTAGCTATAAGCTAGGGTCTTAATATCCATGTATGTTTAAGAATAATAAAGTTATAAGATCTGGGACTGTGCTATATGTGTGTGCACGCGCACACACACNACATGACTTGATCATATTACGCGTTAAAAAAAAAAA] consensusID : consensus_8934#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 418 fasta sequence [TTTGCGAGGCCATCAAGGTGAAAGCCCTCGTCAATCTGAAGGTCAATGTCCCCAACATCCTAAAAGCATGCGGCAAGGTTTCCGCTGTAACTTGTGTTAATTAATCAGTACGTTGAGAGATAGCGTGCATGCATATATACGTAAGTATACGTATGTATGTACATGCTATATATAGGCATGCAGCATCTATATATGTTGCGTGTTTGCCTCTACATATATGCTGTATTAAACTTGGATGACCCAATATATATCTGCCAGCAGCGTGCGTGCGCGTACGTGCCGTTCTTCATTGAGGTAGCTATAAGCTAGGGTCTTAATATCCATGTATGTTTAAGAATAATAAAGTTATAAGATCTGGGACTGTGCTATATGTGTGTGCACGCGCACACACACACATGACTTGATCAAAAAAAAAAAA] [-] EMBL CF279585 [TTTGCGAGGCCATCAAGGTGAAAGCCCTCGTCAATCTGAAGGTCAATGTCCCCAACATCCTAAAAGCATGCGGCAAGGTTTCCGCTGTAACTTGTGTTAATTAATCAGTACGTTGAGAGATAGCGTGCATGCATATATACGTAAGTATACGTATGTATGTACATGCTATATATAGGCATGCAGCATCTATATATGTTGCGTGTTTGCCTCTACATATATGCTGTATTAAACTTGGATGACCCAATATATATCTGCCAGCAGCGTGCGTGCGCGTACGTGCCGTTCTTCATTGAGGTAGCTATAAGCTAGGGTCTTAATATCCATGTATGTTTAAGAATAATAAAGTTATAAGATCTGGGACTGTGCTATATGTGTGTGCACGCGCACACACACACATGACTTGATCAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8934#1 ------------------------------------------------------------ consensus_8934#2 ------------------------------------------------------------ consensus_8934#0 ACATATTCCAACAATGGCAAGCAAACGGGCAATGAACTCTGCCTTGTTCTTTGCATCAGT 60 consensus_8934#1 ------------------------------------------------------------ consensus_8934#2 ------------------------------------------------------------ consensus_8934#0 TATTTTGGTCTTGGCTTCTGCCGTCAACGGGGGACTAGTGCTACATGGCCATAGCCCATG 120 consensus_8934#1 ------------------------------------------------------------ consensus_8934#2 ------------------------------------------------------------ consensus_8934#0 CCTAGCCACGGCGCCAACCCCGACCGAAACTCCAGCCCCAGCACCAGCCCTGGTGGTGCC 180 consensus_8934#1 ------------------------------------------------------------ consensus_8934#2 ------------------------------------------------------------ consensus_8934#0 ACCGACGCCCGCACCAACTCCGGTCCCGACACCATCACCAGCGCCGCCTCCCAAGTGCCC 240 consensus_8934#1 ------------------------------------------------------------ consensus_8934#2 ------------------------------------------------------------ consensus_8934#0 GCTGCCGTTAGCTGATCTTGGTGTGTGCCTTAATGTTGCTCTTGGCAACCAGCTCTTGAA 300 consensus_8934#1 ------------------------------------------------------------ consensus_8934#2 --------------------------------------------------------TTTG 4 consensus_8934#0 CCAGCAGTGCTGCTCGCAACTCTCCAGCCTCCCGAGCGACACCGCCGCTTTCTGCCTTTG 360 consensus_8934#1 ------CATCAAGGTGAAAGCCCTCGTCAATCTGAAGGTCAATGTCCCCAACATCCTAAA 54 consensus_8934#2 CGAGGCCATCAAGGTGAAAGCCCTCGTCAATCTGAAGGTCAATGTCCCCAACATCCTAAA 64 consensus_8934#0 CGAGGCCATCAAGGTGAAAGCCCTCGTCAATCTGAAGGTCAATGTCCCCAACATCCTAAA 420 ****************************************************** consensus_8934#1 AGCATGCGGCAAGGTTTCCGCTGTAACTTGTGTTAATTAATCAGTACGTTGAGAGATAGC 114 consensus_8934#2 AGCATGCGGCAAGGTTTCCGCTGTAACTTGTGTTAATTAATCAGTACGTTGAGAGATAGC 124 consensus_8934#0 AGCATGCGGCAAGGTTTCCGCTGTAACTTGTGTTAATTAATCAGTACGTTGAGAGATAGC 480 ************************************************************ consensus_8934#1 GTGCATGCATATATACGTAAGTATACGTATGTATGTACATGCTATATATAGGCATGCAGC 174 consensus_8934#2 GTGCATGCATATATACGTAAGTATACGTATGTATGTACATGCTATATATAGGCATGCAGC 184 consensus_8934#0 GTGCATGCATATATACGTAAGTATACGTATGTATGTACATGCTATATATAGGCATGCAGC 540 ************************************************************ consensus_8934#1 ATCTATATATGTTGCGTGTTTGCCTCTACATATATGCTGTATTAAACTTGGATGACCCAA 234 consensus_8934#2 ATCTATATATGTTGCGTGTTTGCCTCTACATATATGCTGTATTAAACTTGGATGACCCAA 244 consensus_8934#0 ATCTATATATGTTGCGTGTTTTCCTCTACATATATGCTGTATTAAACTTGGATGACCCAA 600 ********************* ************************************** consensus_8934#1 TATATATCTGCCAGCAGCGTGCGTGCGCGTACGTGCCGTTCTTCATTGAGGTAGCTATAA 294 consensus_8934#2 TATATATCTGCCAGCAGCGTGCGTGCGCGTACGTGCCGTTCTTCATTGAGGTAGCTATAA 304 consensus_8934#0 TATATATCTGCCAGCAGCGT----------ACGTGCCGTTCTTCATTGAGGTAGCTATAA 650 ******************** ****************************** consensus_8934#1 GCTAGGGTCTTAATATCCATGTATGTTTAAGAATAATAAAGTTATAAGATCTGGGACTGT 354 consensus_8934#2 GCTAGGGTCTTAATATCCATGTATGTTTAAGAATAATAAAGTTATAAGATCTGGGACTGT 364 consensus_8934#0 GCTAGGGTCTTAATATCCATGTATGTTTAAGAATAATAAAGTTATAAGATCTGGGACTGT 710 ************************************************************ consensus_8934#1 GCTATATGTGTGTGCACGCGCACACACACNACATGACTTGATCATATTACGCGTTAAAAA 414 consensus_8934#2 GCTATATGTGTGTGCACGCGCACACACACA-CATGACTTGATCA-----------AAAAA 412 consensus_8934#0 GCTATAAGTGTGTGCACGCGCACACACACA-CATGACTTGATCCTATTACGCGTTAAAAA 769 ****** ********************** ************ ***** consensus_8934#1 AAAAAA---------- 420 consensus_8934#2 AAAAAA---------- 418 consensus_8934#0 AAAAATTAAAAAAAAA 785 ***** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||