cluster # 8934

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Oryza sativa
cluster # 8934 cluster # 8934 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8934#0 length = 785 sequences # 4

consensus_8934#1 length = 420 sequences # 1
consensus_8934#2 length = 418 sequences # 1

consensusID : consensus_8934#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 785
fasta sequence

                              [ACATATTCCAACAATGGCAAGCAAACGGGCAATGAACTCTGCCTTGTTCTTTGCATCAGTTATTTTGGTCTTGGCTTCTGCCGTCAACGGGGGACTAGTGCTACATGGCCATAGCCCATGCCTAGCCACGGCGCCAACCCCGACCGAAACTCCAGCCCCAGCACCAGCCCTGGTGGTGCCACCGACGCCCGCACCAACTCCGGTCCCGACACCATCACCAGCGCCGCCTCCCAAGTGCCCGCTGCCGTTAGCTGATCTTGGTGTGTGCCTTAATGTTGCTCTTGGCAACCAGCTCTTGAACCA-GCAGTGCTGCTCGCAACTCTCCAGCCTCCCGAGCGACACCGCCGCTTTCTGCCTTTGCGAGGCCATCAAGGTGAAAGCCCTCGTCAATCTGAAGGTCAATGTCCCCAACATCCTAAAAGCATGCGGCAAGGTTTCCGCTGTAACTTGTGTTAATTAATCAGTACGTTGAGAGATAGCGTGCATGCATATATACGTAAGTATACGTATGTATGTACATGCTATATATAGGCATGCAGCATCTATATATGTTGCGTGTTTTCCTCTACATATATGCTGTATTAAACTTGGATGACCCAATATATATCTGCCAGCAGCGTACGTGCCGTTCTTCATTGAGGTAGCTATAAGCTAGGGTCTTAATATCCATGTATGTTTAAGAATAATAAAGTTATAAGATCTGGGACTGTGCTATAAGTGTGTGCACGCGCACACACACACATGACTTGATCCTATTACGCGTTAAAAAAAAAATTAAAAAAAAA]

[+] EMBL CF279586             [ACATATTCCAACAATGGCAAGCAAACGGGCAATGAACTCTGCCTTGTTCTTTGCATCAGTTATTTTGGTCTTGGCTTCTGCCGTCAACGGGGGACTAGTGCTACATGGCCATAGCCCATGCCTAGCCACGGCGCCAACCCCGACCGAAACTCCAGCCCCAGCACCAGCCCTGGTGGTGCCACCGACGCCCGCACTTTCTCCGGTCCCGACACCATCACCAGCGCCGCCTCCCAAGTGCCCGCTGCCGTTAGCTGATCTTGGTGTGTGCCTTAATGTTGCTCTTGGCAACCAGCTCTTGAACCA GCAGTGCTGCTCGCAACTCTCCAGCCTCCCGAGCGACACCGCCGCTTTCTGCCTTTGCGAGGCCATCAAGGTGAAAGCCCTCGTCAATCTGAAGGTCAATGTCCCCAACATCCTAAAAGCATGCGGCAAGGTTTCCGCTGTAACTTGTGTTAATTAATCAGTACGTTGAGAGATAGCGTGCATGCATATATACGTAAGTATACGTATGTATGTACATGCTATATATAGGCATGCAGCATCTAT                                                                                                                                                                                                                                               ]
[+] EMBL CF302618             [           CAATGGCAAGCAAACGGGCAATGAACTCTGCCTTGTTCTTTGCATCAGTTATTTTGGTCTTGGCTTCTGCCGTCAACGGGGGACTAGTGCTACATGGCCATAGCCCATGCCTAGCCACGGCGCCAACCCCGACCGAAACTCCAGCCCCAGCACCAGCCCTGGTGGTGCCACCGACGCCCGCACCAACTCCGGTCCCGACACCATCACCAGCGCCGCCTCCCAAGTGCCCGCTGCCGTTAGCTGATCTTGGTGTGTGCCTTAGTGTTGCTCTTGGCAACCAGCTCTTGAACCA GCAGTGCTGCTCGCAACTCTCCAGCCTCCCGAGCGACACCGCCGCTTTCTGCCTTTGCGAGGCCATCAAGGTGAAAGCCCTCGTCAATCTGAAGGTCAATGTCCCCAACATCCTAAAAGCATGCGGCAAGGTTTCCGCTGTAACTTGTGTTAATTAATCAGTACGTTGAGAGATAGCGTGCATGCATATATACGTAAGTATACGTATGTATGTAC                                                                                                                                                                                                                                                                           ]
[+] EMBL BF430490             [                                  AACTCTGCCTTGTTCTTTGCATCAGTTATTTTGGTCTTGGCTTCTGCCGTCAACGGGGGACTAGTACTACATGGCCATAGCCCATGCCTAGGCACGGCGCCAACCCCGACCGAAACTCCAGCCCCAGCACCAGCCCTGGTGGTGCCACCGACGCCCGCACCAACTCCGGTCCCAACACCATCACCAGCGCCGCCTCCCAAGTGCCCGCTGCCGTTAGCTGATCTTGGTGTGTGCCTTAATGTTGCTCTTGGCAACCAGCTCTTGAACCA GCAGTGCTGCTCGCAACTCTCCAGCCTCCCGAGCGACACCGCCGCTTTCTGCCTTTGCGAGGCCATCAAGGTGAAAGCCCTCGTCAATCTGAAGGTCAATGTCCCCAACATCCTAAAAGCATGCGGCAAGGTTTCCGCTGTAACTTGTGTTAATTAATCAGTACGTTGAGAGATAGCGTGCATGCAAATATACGTAAGTATACGTATGTATGTACATGCTATATATAGGCATGCAGCATCTATATATGTTGCGTGTTTTCCTCTACATATATGCTGTATTAAACTTGGATGACCCAATATATATCTGCCAGCAGCGTACGTGCCGTTCTTCATTGAGGTAGCTATAAGCTAGGGTCTTAATATCCATGTATGTTTAAGAATAATAAAGTTATAAGATCTGGGACTGTGCTATAA                                                                    ]
[+] EMBL BI798776             [                                                                                                                                                                                                                                           TGCCCCCT CCCTTACCTGATCTTGGTGTGTCCCTTAATGTTGCTCTTGGCAACCAGCTCTTGAACCACGCAGTGCTGCTCGCAACTCT CAGCCTCCCGAGCGACACCGCCGCTTTCTGCCTTTGCGAGGCCATCAAGGTGAAAGCCCTCGTC ATTTGAAGGTCAATGTCCCCAACATCCTAAAAGCATGCGGCAAGGTTTCCGCTGTAACTTGTGTTAATTAATCAGTACGTTGAGAGATAGCGTGCATGCAAATATACGTAAGTATACGTATGTATGTACATGCTATATATAGGCATGCAGCATCTATATATGTTGCGTGTTTTCCTCTACATATATGCTGTATTAAACTTGGATGACCCAATATATATCTGCCAGCAGCGTACGTGCCGTTCTTCATTGAGGTAGCTATAAGCTAGGGTCTTAATATCCATGTATGTTTAAGAATAATAAAGTTATAAGATCTGGGACTGTGCTATATGTGTGTGCACGCGCACACACACACATGACTTGATCCTATTACGCGTTAAAAAAAAAATTAAAAAAAAA]




>consensus_8934#0
ACATATTCCAACAATGGCAAGCAAACGGGCAATGAACTCTGCCTTGTTCTTTGCATCAGT
TATTTTGGTCTTGGCTTCTGCCGTCAACGGGGGACTAGTGCTACATGGCCATAGCCCATG
CCTAGCCACGGCGCCAACCCCGACCGAAACTCCAGCCCCAGCACCAGCCCTGGTGGTGCC
ACCGACGCCCGCACCAACTCCGGTCCCGACACCATCACCAGCGCCGCCTCCCAAGTGCCC
GCTGCCGTTAGCTGATCTTGGTGTGTGCCTTAATGTTGCTCTTGGCAACCAGCTCTTGAA
CCAGCAGTGCTGCTCGCAACTCTCCAGCCTCCCGAGCGACACCGCCGCTTTCTGCCTTTG
CGAGGCCATCAAGGTGAAAGCCCTCGTCAATCTGAAGGTCAATGTCCCCAACATCCTAAA
AGCATGCGGCAAGGTTTCCGCTGTAACTTGTGTTAATTAATCAGTACGTTGAGAGATAGC
GTGCATGCATATATACGTAAGTATACGTATGTATGTACATGCTATATATAGGCATGCAGC
ATCTATATATGTTGCGTGTTTTCCTCTACATATATGCTGTATTAAACTTGGATGACCCAA
TATATATCTGCCAGCAGCGTACGTGCCGTTCTTCATTGAGGTAGCTATAAGCTAGGGTCT
TAATATCCATGTATGTTTAAGAATAATAAAGTTATAAGATCTGGGACTGTGCTATAAGTG
TGTGCACGCGCACACACACACATGACTTGATCCTATTACGCGTTAAAAAAAAAATTAAAA
AAAAA

consensusID : consensus_8934#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 420
fasta sequence

                              [CATCAAGGTGAAAGCCCTCGTCAATCTGAAGGTCAATGTCCCCAACATCCTAAAAGCATGCGGCAAGGTTTCCGCTGTAACTTGTGTTAATTAATCAGTACGTTGAGAGATAGCGTGCATGCATATATACGTAAGTATACGTATGTATGTACATGCTATATATAGGCATGCAGCATCTATATATGTTGCGTGTTTGCCTCTACATATATGCTGTATTAAACTTGGATGACCCAATATATATCTGCCAGCAGCGTGCGTGCGCGTACGTGCCGTTCTTCATTGAGGTAGCTATAAGCTAGGGTCTTAATATCCATGTATGTTTAAGAATAATAAAGTTATAAGATCTGGGACTGTGCTATATGTGTGTGCACGCGCACACACACNACATGACTTGATCATATTACGCGTTAAAAAAAAAAA]

[-] EMBL CF302617             [CATCAAGGTGAAAGCCCTCGTCAATCTGAAGGTCAATGTCCCCAACATCCTAAAAGCATGCGGCAAGGTTTCCGCTGTAACTTGTGTTAATTAATCAGTACGTTGAGAGATAGCGTGCATGCATATATACGTAAGTATACGTATGTATGTACATGCTATATATAGGCATGCAGCATCTATATATGTTGCGTGTTTGCCTCTACATATATGCTGTATTAAACTTGGATGACCCAATATATATCTGCCAGCAGCGTGCGTGCGCGTACGTGCCGTTCTTCATTGAGGTAGCTATAAGCTAGGGTCTTAATATCCATGTATGTTTAAGAATAATAAAGTTATAAGATCTGGGACTGTGCTATATGTGTGTGCACGCGCACACACACNACATGACTTGATCATATTACGCGTTAAAAAAAAAAA]




>consensus_8934#1
CATCAAGGTGAAAGCCCTCGTCAATCTGAAGGTCAATGTCCCCAACATCCTAAAAGCATG
CGGCAAGGTTTCCGCTGTAACTTGTGTTAATTAATCAGTACGTTGAGAGATAGCGTGCAT
GCATATATACGTAAGTATACGTATGTATGTACATGCTATATATAGGCATGCAGCATCTAT
ATATGTTGCGTGTTTGCCTCTACATATATGCTGTATTAAACTTGGATGACCCAATATATA
TCTGCCAGCAGCGTGCGTGCGCGTACGTGCCGTTCTTCATTGAGGTAGCTATAAGCTAGG
GTCTTAATATCCATGTATGTTTAAGAATAATAAAGTTATAAGATCTGGGACTGTGCTATA
TGTGTGTGCACGCGCACACACACNACATGACTTGATCATATTACGCGTTAAAAAAAAAAA

consensusID : consensus_8934#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 418
fasta sequence

                              [TTTGCGAGGCCATCAAGGTGAAAGCCCTCGTCAATCTGAAGGTCAATGTCCCCAACATCCTAAAAGCATGCGGCAAGGTTTCCGCTGTAACTTGTGTTAATTAATCAGTACGTTGAGAGATAGCGTGCATGCATATATACGTAAGTATACGTATGTATGTACATGCTATATATAGGCATGCAGCATCTATATATGTTGCGTGTTTGCCTCTACATATATGCTGTATTAAACTTGGATGACCCAATATATATCTGCCAGCAGCGTGCGTGCGCGTACGTGCCGTTCTTCATTGAGGTAGCTATAAGCTAGGGTCTTAATATCCATGTATGTTTAAGAATAATAAAGTTATAAGATCTGGGACTGTGCTATATGTGTGTGCACGCGCACACACACACATGACTTGATCAAAAAAAAAAAA]

[-] EMBL CF279585             [TTTGCGAGGCCATCAAGGTGAAAGCCCTCGTCAATCTGAAGGTCAATGTCCCCAACATCCTAAAAGCATGCGGCAAGGTTTCCGCTGTAACTTGTGTTAATTAATCAGTACGTTGAGAGATAGCGTGCATGCATATATACGTAAGTATACGTATGTATGTACATGCTATATATAGGCATGCAGCATCTATATATGTTGCGTGTTTGCCTCTACATATATGCTGTATTAAACTTGGATGACCCAATATATATCTGCCAGCAGCGTGCGTGCGCGTACGTGCCGTTCTTCATTGAGGTAGCTATAAGCTAGGGTCTTAATATCCATGTATGTTTAAGAATAATAAAGTTATAAGATCTGGGACTGTGCTATATGTGTGTGCACGCGCACACACACACATGACTTGATCAAAAAAAAAAAA]




>consensus_8934#2
TTTGCGAGGCCATCAAGGTGAAAGCCCTCGTCAATCTGAAGGTCAATGTCCCCAACATCC
TAAAAGCATGCGGCAAGGTTTCCGCTGTAACTTGTGTTAATTAATCAGTACGTTGAGAGA
TAGCGTGCATGCATATATACGTAAGTATACGTATGTATGTACATGCTATATATAGGCATG
CAGCATCTATATATGTTGCGTGTTTGCCTCTACATATATGCTGTATTAAACTTGGATGAC
CCAATATATATCTGCCAGCAGCGTGCGTGCGCGTACGTGCCGTTCTTCATTGAGGTAGCT
ATAAGCTAGGGTCTTAATATCCATGTATGTTTAAGAATAATAAAGTTATAAGATCTGGGA
CTGTGCTATATGTGTGTGCACGCGCACACACACACATGACTTGATCAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8934#1      ------------------------------------------------------------
consensus_8934#2      ------------------------------------------------------------
consensus_8934#0      ACATATTCCAACAATGGCAAGCAAACGGGCAATGAACTCTGCCTTGTTCTTTGCATCAGT 60
                                                                                  

consensus_8934#1      ------------------------------------------------------------
consensus_8934#2      ------------------------------------------------------------
consensus_8934#0      TATTTTGGTCTTGGCTTCTGCCGTCAACGGGGGACTAGTGCTACATGGCCATAGCCCATG 120
                                                                                  

consensus_8934#1      ------------------------------------------------------------
consensus_8934#2      ------------------------------------------------------------
consensus_8934#0      CCTAGCCACGGCGCCAACCCCGACCGAAACTCCAGCCCCAGCACCAGCCCTGGTGGTGCC 180
                                                                                  

consensus_8934#1      ------------------------------------------------------------
consensus_8934#2      ------------------------------------------------------------
consensus_8934#0      ACCGACGCCCGCACCAACTCCGGTCCCGACACCATCACCAGCGCCGCCTCCCAAGTGCCC 240
                                                                                  

consensus_8934#1      ------------------------------------------------------------
consensus_8934#2      ------------------------------------------------------------
consensus_8934#0      GCTGCCGTTAGCTGATCTTGGTGTGTGCCTTAATGTTGCTCTTGGCAACCAGCTCTTGAA 300
                                                                                  

consensus_8934#1      ------------------------------------------------------------
consensus_8934#2      --------------------------------------------------------TTTG 4
consensus_8934#0      CCAGCAGTGCTGCTCGCAACTCTCCAGCCTCCCGAGCGACACCGCCGCTTTCTGCCTTTG 360
                                                                                  

consensus_8934#1      ------CATCAAGGTGAAAGCCCTCGTCAATCTGAAGGTCAATGTCCCCAACATCCTAAA 54
consensus_8934#2      CGAGGCCATCAAGGTGAAAGCCCTCGTCAATCTGAAGGTCAATGTCCCCAACATCCTAAA 64
consensus_8934#0      CGAGGCCATCAAGGTGAAAGCCCTCGTCAATCTGAAGGTCAATGTCCCCAACATCCTAAA 420
                            ******************************************************

consensus_8934#1      AGCATGCGGCAAGGTTTCCGCTGTAACTTGTGTTAATTAATCAGTACGTTGAGAGATAGC 114
consensus_8934#2      AGCATGCGGCAAGGTTTCCGCTGTAACTTGTGTTAATTAATCAGTACGTTGAGAGATAGC 124
consensus_8934#0      AGCATGCGGCAAGGTTTCCGCTGTAACTTGTGTTAATTAATCAGTACGTTGAGAGATAGC 480
                      ************************************************************

consensus_8934#1      GTGCATGCATATATACGTAAGTATACGTATGTATGTACATGCTATATATAGGCATGCAGC 174
consensus_8934#2      GTGCATGCATATATACGTAAGTATACGTATGTATGTACATGCTATATATAGGCATGCAGC 184
consensus_8934#0      GTGCATGCATATATACGTAAGTATACGTATGTATGTACATGCTATATATAGGCATGCAGC 540
                      ************************************************************

consensus_8934#1      ATCTATATATGTTGCGTGTTTGCCTCTACATATATGCTGTATTAAACTTGGATGACCCAA 234
consensus_8934#2      ATCTATATATGTTGCGTGTTTGCCTCTACATATATGCTGTATTAAACTTGGATGACCCAA 244
consensus_8934#0      ATCTATATATGTTGCGTGTTTTCCTCTACATATATGCTGTATTAAACTTGGATGACCCAA 600
                      ********************* **************************************

consensus_8934#1      TATATATCTGCCAGCAGCGTGCGTGCGCGTACGTGCCGTTCTTCATTGAGGTAGCTATAA 294
consensus_8934#2      TATATATCTGCCAGCAGCGTGCGTGCGCGTACGTGCCGTTCTTCATTGAGGTAGCTATAA 304
consensus_8934#0      TATATATCTGCCAGCAGCGT----------ACGTGCCGTTCTTCATTGAGGTAGCTATAA 650
                      ********************          ******************************

consensus_8934#1      GCTAGGGTCTTAATATCCATGTATGTTTAAGAATAATAAAGTTATAAGATCTGGGACTGT 354
consensus_8934#2      GCTAGGGTCTTAATATCCATGTATGTTTAAGAATAATAAAGTTATAAGATCTGGGACTGT 364
consensus_8934#0      GCTAGGGTCTTAATATCCATGTATGTTTAAGAATAATAAAGTTATAAGATCTGGGACTGT 710
                      ************************************************************

consensus_8934#1      GCTATATGTGTGTGCACGCGCACACACACNACATGACTTGATCATATTACGCGTTAAAAA 414
consensus_8934#2      GCTATATGTGTGTGCACGCGCACACACACA-CATGACTTGATCA-----------AAAAA 412
consensus_8934#0      GCTATAAGTGTGTGCACGCGCACACACACA-CATGACTTGATCCTATTACGCGTTAAAAA 769
                      ****** **********************  ************            *****

consensus_8934#1      AAAAAA---------- 420
consensus_8934#2      AAAAAA---------- 418
consensus_8934#0      AAAAATTAAAAAAAAA 785
                      *****