These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9090#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1947 fasta sequence [TTCCCACGCCACCGTCGAACACCTTCACCCATGGCGTCCATGGCCGCCCTCCTCGTCGTCGTCTTCCTCGCCGGCTGCCACGTGGGGGTAGTGGTGGCGCAGGGGAGGAGCACCGCGGCGGCGCATGGCATCGGGGTGAACTACGGGAGGGTGGCGGACGACATCCCGCCGCCGGCGAGGTCGGTGGAGCTCCTCCGGGCGGTGGGGGCCGGGTCGGTGAAGATCTACGACGCGAACTCGAGCGTGCTCCGCGCGCTGGCGGGGACGCGCATGCGGGTGTCGATCATGGTGCCCAACGAGATCATCCCGGGGCTCGCCGCCTCCGCCGCCGCCGCGGACAGGTGGGTGGCGGAGAATCTGGTGCCCTACTACCCGGAGACGCGGGTCAAGTACCTCCTCGTCGGCAACGAGCTCCTCTCCGACTACTCCATCGCCAACTCCACCTGGCCCCGCATCGTGCCGGCCATGGAGAACCTCCTCGTGAGCCTCCGGAGGAGGAGGATCAGCAGCGTCAAGATCAGCACCACGCTCGCCATGGACGCGCTCACGTCGGGGTCGTTCCCGCGGCCGCCGTCCGCCGCGGCGTTCCGCCCCGACATCGCCGGCGACGTCGTGCGCCCGCTGCTCCGGTTCTTGAACGGGACGAACTCGTACTACTTCGTCGACGCCTACCCGTACTTCGTCTGGGCCGGCAACAACGACACCGTCCCGCTCGAGTACGCGCTCTTCCAGGGCGGCGGCGGCGGCGGCCGCTACGTTGATCCGGGCACGGGGCTCACATACACCAACATGCTCGACGAAATGCTCGACGCCGTGGTGCACGCGATGGCGAAGCTGGGGTACGGGGGCGTGAAGCTGGGCATCGCGGAGACCGGCTGGCCCAACGGCGGCGACTACGAGCAGATCGGCTGCAACGCCCACAACGCCGCCATCTACAACAGGAACCTCGCGGCGCGGATGGCGAGGAGCCCCGGCACGCCGGCGCGGCCCGGCGCGAAGATGCCGGTGTTCGTGTTCTCGCTCTACAACGAGGACCTCAAGCCGGGGCCCGGCACGGAGCGGCACTGGGGGCTGTACTACGCCAACGGCACGGCGGTGTACCCGGTTGACCTCGCCGGAGCGCGGCCGCTCCGGTCGTACCCGCTGCTGCCGCCGCCGGAGAACGACGCGCCGTACAAGGGCCCCGTGTGGTGCGTGCTCGCCGGCCGCCGCGGCGAGAAGCTGAACGAGACGGCGGTGGGCGACGCGCTGGCGTACGCGTGCGGGCAGGGGAACGGGACGTGCGACGCCATCCAGCCCGGCGGGGAGTGCTTCCGGCCGAACACCACGGCGGCGCACGCCAGCTACGCCTTCAACTCGTACTGGCAGCAGCTGAGGAAGACCGGTGCGACGTGCTACTTCAACAACCTCGCCGAGGAGACCACCAAAGATCCAAGCCACGGATCATGCAAATTCCACAGTTCTTTGGACTAACTGATTGCATGGGAGGACAATATGAAAATGAACAACATTGTTCTCGATTTATTTTATTTTTGTCAAACCTGATTAGATTTAGACCCAGGAAGTTAGGTAGTTGAGTACTTCTGTATCTGCTCATCGTCTACAAAACCTGTGAACTGTGATGTAACAGCGAAATTTGCCGTCTGTTTTTCTGTGGCTTAATCAGTAGAAGAAGATCTGTGGCTTAATTAGAACGAAATTTTCAGAACTGAACCACCTGCCTCTGCATGGGCCTCACATGGGCCATACATGGGCCTGCACCTGCCTCTGCAACCGAGCTAGGAGTAGCAGTTCTGCCA-CACGGCCCGTCTA-CAAGGATGGTGTTGTACTGTGTCACTCATCCTTCGAGTTTTAGTTTTTTTTTTTTGTAATATCTTTTAATAGTTTGCA-CATCATCTA-CAGAAATATTTTGATGTATG-CA-AGTTATTTAAAAAGAATCTTTTATAT] [+] EMBL AK121879 [TTCCCACGCCACCGTCGAACACCTTCACCCATGGCGTCCATGGCCGCCCTCCTCGTCGTCGTCTTCCTCGCCGGCTGCCACGTGGGGGTAGTGGTGGCGCAGGGGAGGAGCACCGCGGCGGCGCATGGCATCGGGGTGAACTACGGGAGGGTGGCGGACGACATCCCGCCGCCGGCGAGGTCGGTGGAGCTCCTCCGGGCGGTGGGGGCCGGGTCGGTGAAGATCTACGACGCGAACTCGAGCGTGCTCCGCGCGCTGGCGGGGACGCGCATGCGGGTGTCGATCATGGTGCCCAACGAGATCATCCCGGGGCTCGCCGCCTCCGCCGCCGCCGCGGACAGGTGGGTGGCGGAGAATCTGGTGCCCTACTACCCGGAGACGCGGGTCAAGTACCTCCTCGTCGGCAACGAGCTCCTCTCCGACTACTCCATCGCCAACTCCACCTGGCCCCGCATCGTGCCGGCCATGGAGAACCTCCTCGTGAGCCTCCGGAGGAGGAGGATCAGCAGCGTCAAGATCAGCACCACGCTCGCCATGGACGCGCTCACGTCGGGGTCGTTCCCGCGGCCGCCGTCCGCCGCGGCGTTCCGCCCCGACATCGCCGGCGACGTCGTGCGCCCGCTGCTCCGGTTCTTGAACGGGACGAACTCGTACTACTTCGTCGACGCCTACCCGTACTTCGTCTGGGCCGGCAACAACGACACCGTCCCGCTCGAGTACGCGCTCTTCCAGGGCGGCGGCGGCGGCGGCCGCTACGTTGATCCGGGCACGGGGCTCACATACACCAACATGCTCGACGAAATGCTCGACGCCGTGGTGCACGCGATGGCGAAGCTGGGGTACGGGGGCGTGAAGCTGGGCATCGCGGAGACCGGCTGGCCCAACGGCGGCGACTACGAGCAGATCGGCTGCAACGCCCACAACGCCGCCATCTACAACAGGAACCTCGCGGCGCGGATGGCGAGGAGCCCCGGCACGCCGGCGCGGCCCGGCGCGAAGATGCCGGTGTTCGTGTTCTCGCTCTACAACGAGGACCTCAAGCCGGGGCCCGGCACGGAGCGGCACTGGGGGCTGTACTACGCCAACGGCACGGCGGTGTACCCGGTTGACCTCGCCGGAGCGCGGCCGCTCCGGTCGTACCCGCTGCTGCCGCCGCCGGAGAACGACGCGCCGTACAAGGGCCCCGTGTGGTGCGTGCTCGCCGGCCGCCGCGGCGAGAAGCTGAACGAGACGGCGGTGGGCGACGCGCTGGCGTACGCGTGCGGGCAGGGGAACGGGACGTGCGACGCCATCCAGCCCGGCGGGGAGTGCTTCCGGCCGAACACCACGGCGGCGCACGCCAGCTACGCCTTCAACTCGTACTGGCAGCAGCTGAGGAAGACCGGTGCGACGTGCTACTTCAACAACCTCGCCGAGGAGACCACCAAAGATCCAAGCCACGGATCATGCAAATTCCACAGTTCTTTGGACTAACTGATTGCATGGGAGGACAATATGAAAATGAACAACATTGTTCTCGATTTATTTTATTTTTGTCAAACCTGATTAGATTCAGACCCAGGAAGTTAGGTAGTTGAGTACTTCTGTATCTGCTCATCGTCTACAAAACCTGTGAACTGTGATGTAACAGCGAAATTTGCCGTCTGTTTTTCTGTGGCTTAATCAGTAGAAGAAGATCTGTGGCTT ] [+] EMBL AK102600 [ CACGCCACCGTCGAACACCTTCACCCATGGCGTCCATGGCCGCCCTCCTCGTCGTCGTCTTCCTCGCCGGCTGCCACGTGGGGGTAGTGGTGGCGCAGGGGAGGAGCACCGCGGCGGCGCATGGCATCGGGGTGAACTACGGGAGGGTGGCGGACGACATCCCGCCGCCGGCGAGGTCGGTGGAGCTCCTCCGGGCGGTGGGGGCCGGGTCGGTGAAGATCTACGACGCGAACTCGAGCGTGCTCCGCGCGCTGGCGGGGACGCGCATGCGGGTGTCGATCATGGTGCCCAACGAGATCATCCCGGGGCTCGCCGCCTCCGCCGCCGCCGCGGACAGGTGGGTGGCGGAGAATCTGGTGCCCTACTACCCGGAGACGCGGGTCAAGTACCTCCTCGTCGGCAACGAGCTCCTCTCCGACTACTCCATCGCCAACTCCACCTGGCCCCGCATCGTGCCGGCCATGGAGAACCTCCACGTGAGCCTCCGGAGGAGGAGGATCAGCAGCGTCAAGATCAGCACCACGCTCGCCATGGACGCGCTCACGTCGGGGTCGTTCCCGCGGCCGCCGTCCGCCGCGGCGTTCCGCCCCGACATCGCCGGCGACGTCGTGCGCCCGCTGCTCCGGTTCTTGAACGGGACGAACTCGTACTACTTCGTCGACGCCTACCCGTACTTCGTCTGGGCCGGCAACAACGACACCGTCCCGCTCGAGTACGCGCTCTTCCAGGGCGGCGGCGGCGGCGGCCGCTACGTTGATCCGGGCACGGGGCTCACATACACCAACATGCTCGACGAAATGCTCGACGCCGTGGTGCACGCGATGGCGAAGCTGGGGTACGGGGGCGTGAAGCTGGGCATCGCGGAGACCGGCTGGCCCAACGGCGGCGACTACGAGCAGATCGGCTGCAACGCCCACAACGCCGCCATCTACAACAGGAACCTCGCGGCGCGGATGGCGAGGAGCCCCGGCACGCCGGCGCGGCCCGGCGCGAAGATGCCGGTGTTCGTGTTCTCGCTCTACAACGAGGACCTCAAGCCGGGGCCCGGCACGGAGCGGCACTGGGGGCTGTACTACGCCAACGGCACGGCGGTGTACCCGGTTGACCTCGCCGGAGCGCGGCCGCTCCGGTCGTACCCGCTGCTGCCGCCGCCGGAGAACGACGCGCCGTACAAGGGCCCCGTGTGGTGCGTGCTCGCCGGCCGCCGCGGCGAGAAGCTGAACGAGACGGCGGTAAGCGACGCGCTGGCGTACGCGTGCGGGCAGGGGAACGGGACGTGCGACGCCATCCAGCCCGGCGGGGAGTGCTTCCGGCCGAACACCACGGCGGCGCACGCCAGCTACGCCTTCAACTCGTACTGGCAGCAGCTGAGGAAGACCGGTGCGACGTGCTACTTCAACAACCTCGCCGAGGAGACCACCAAAGATCCAAGCCACGGATCATGCAAATTCCACAGTTCTTTGGACTAACTGATTGCATGGGAGGACAATATGAAAATGAACAACATTGTTCTCGATTTATTTTATTTTTGTCAAACCTGATTAGATTTAGACCCAGGAAGTTAGGTAGTTGAGTACTTCTGTATCTGCTCATCGTCTACAAAACCTGTGAACTGTGATGTAACAGCGAAATTTGCCGTCTGTTTTTCTGTGGCTTAATCAGTAGAAGAAGATCTGTGGCTTAATTAGAACGAAATTTTCAGAACTGAACCACCTGCCTCTGCATGGGCCTCACATGGGCCATACATGGGCCTGCACCTGCCTCTGCAACCGAGCTAGGAGTAGCAGTTCTGCCA CACGGCCCGTCTA CAAGGATGGTGTTGTACTGTGTCACTCATCCTTCGAGTTTTAG TTTTTTTTTTGTAATATCTTTTAATAGTTTGCA CATCATCTA CAGAAATATTTTGATGTACG CA AGTTATTTAAAAAGAATCTT ] [-] EMBL CB966400 [ GTCAAACCTGATTAGATTTAGACCCAGGAAGTTAGGTAGTTGAGTACTTCTGTATCTGCTCATCGTCTACCAAACCTGTGAACTGTGATGTAACAGAGAAATTTGCCGTCTGTTTTTCTGTGGCTTAATCAGTAGAAGAAGATCTGTGGCTTAATTAGAACGAAATTTTCAGAACTGAACCACCTGCCTCTGCATGGGCCTCACATGGGCCATACATGGGCCTGCACCTGCCTCTGCAACCGAGCTAGGAGTAGCAGTTCTGCCA CACGGCCCGTCTA CAAGGATGGTGTTGTACTGTGTCACTCATCCTTCGAGTTTTAGTTTTTTTTTTTTGTAATATCTTTTAATAGTTTGCA CATCATCTA CAGAAATATTTTGATGTATGCCACAGTTATTTAAAAAGAATCTTTTATAT] [-] EMBL CB966347 [ GTCAAACCTGATTAGATTTAGACCCAGGAAGTTAGGTAGTTGAGTACTTCTGTATCTGCTCATCGTCTACCAAACCTGTGAACTGTGATGTAACAGAGAAATTTCCCGTCTGTTTTTCTGTGGCTTAATCAGTAGAAGAAGATCTGTGGCTTAATTAGAACGAAATTTTCAGAACTGAACCCCCTGCCTCTGCATGGGCCTCACATGGGCCATACATGGGCCTGCACCTGCCTCTGCAACCGAGCTAGGAGTAGCAGTTCTGCCA CACGGCCCGTCTA CAAGGATGGTGTTGTACTGTGTCACTCATCCTTCGAGTTTTAGTTTTTTTTTTTTGTAATATCTTTTAATAGTTTGCA CATCATCTA CAGAAATATTTTGATGTATG CA AGTTATTTAAAAAGAATCTTTAATAT] [-] EMBL CB966775 [ TTCTGCCACCCCGGCCCGTCTACCCAGGATGGTGTTGTACTGTGTCACTCATCCTTCGAGTTTTAGTTTTTTTTTTTTGTAATATCTTTTAATAGTTTGCA CATCATCTACCAGAAATATTTTGATGTATG CC AGTTATTTAAAAAG ATCTTTTATAT] [-] EMBL CB965569 [ TTTAATAGTTCGCACCATCATCTACCAGAAATATTTTGATGTATG CC AGTTATTTAAAAAGAATCTTTTATA ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||