These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9130#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 832 fasta sequence [CTCTCCTCCGCCTCACGCGCACTCGCCGCCGCAAAACCCCGCTCGCCTGAACCCTTCGCCGCCGCCGCCGCGGTCTTACTCCGCCGCCAGCTCGCCGCAGGCATGGCGGCCGCGCCGGCGTCGTCCGCGTCCGCGGCGGGGAACCGCGAGGCGTTCCGCGTGGCGGTGACCAACACGCTGGAGCGCCGCCTCTTCTACGTCCCGTCCTTCAAGATCTACGGCGGCGTCGCGGGCCTCTACGACTACGGCCCTCCCGGCTGCGCCGTCAAGGCCAACGTCCTCGCCTTCTGGCGCCAGCATTTCGTGTTGGAGGAGGGGATGCTTGAGGTGGACTGCCCATGTGTGACTCCTGAAGTTGTCTTGAAGGCCTCTGGCCATGTCGACAAATTTACAGATCTGATGGTTAAAGATGAAAAGACTGGCACCTGCTATCGTGCTGATCATTTGCTCAAGGACTTCTGCAAGGATAAGCTTGAGAAGGACAATACATTGTCACCAGAGAAGACAGCAGAATTCAACCATGTTCTTGCTGTCTTGGATGATCTGTCTGCAGAACAGTTGGGTGCTAAGATCAAGGAGTATGGCATTGTTGCTCCAGACACCAAGAACCCGTTGTCAGACCCATACCCCTTTAACCTCATGTTTCAAACTTCCATTGGACCATCAGGCTTGAGCCCAGGGTATATGAGGCCAGAGACAGCACAAGGTATCTTTGTAAACTTCAAAGACTTGTATTACTACAACGGCAACAAGCTACCCTTTGCTGCAGCACAGATTGGTCAGGCCTTCAGAAATGAGATATCTCCTCGCCAAGGACTTCTGAGAGTCCGAG] [+] EMBL CB644404 [CTCTCCTCCGCCTCACGCGCACTCGCCGCCGCAAAACCCCGCTCGCCTGAACCCTTCGCCGCCGCCGCCGCGGTCTTACTCCGCCGCCAGCTCGCCGCAGGCATGGCGGCCGCGCCGGCGTCGTCCGCGTCCGCGGCGGGGAACCGCGAGGCGTTCCGCGTGGCGGTGACCAACACGCTGGAGCGCCGCCTCTTCTACGTCCCGTCCTTCAAGATCTACGGCGGCGTCGCGGGCCTCTACGACTACGGCCCTCCCGGCTGCGCCGTCAAGGCCAACGTCCTCGCCTTCTGGCGCCAGCATTTCGTGTTGGAGGAGGGGATGCTTGAGGTGGACTGCCCATGTGTGACTCCTGAAGTTGTCTTGAAGGCCTCTGGCCATGTCGACAAATTTACAGATCTGATGGTTAAAGATGAAAAGACTGGCACCTGCTATCGTGCTGATCATTTGCTCAAGGACTTCTGCAAGGATAAGCTTGAGAAGGACAATACATTGTCACCAGAGAAGACAGCAGAATTCAACCATGTTCTTGCTGTCTTGGATGATCTGTCTGCAGAACAGTTGGGTGCTAAGATCAAGGAGTATGGCATTGTTGCTCCAGACACCAAGAACCCGTTGTCAGACCCATACCCCTTTAACCTCATGTTTCAAACTTCCATTGGACCATCAGGCTTGAGCCCAGGGTATATGAGGCCAGAGACAGCACAAGGTATCTTTGTAAACTTCAAAGACTTGTATTACTACAACGGCAACAAGCT ] [+] EMBL CB638227 [ GCACTCGCCGCCGCAAAACCCCGCTCGCCTGAACCCTTCGCCGCCGCCGCCGCGGTCTTACTCCGCCGCCAGCTCGCCGCAGGCATGGCGGCCGCGCCGGCGTCGTCCGCGTCCGCGGCGGGGAACCGCGAGGCGTTCCGCGTGGCGGTGACCAACACGCTGGAGCGCCGCCTCTTCTACGTCCCGTCCTTCAAGATCTACGGCGGCGTCGCGGGCCTCTACGACTACGGCCCTCCCGGCTGCGCCGTCAAGGCCAACGTCCTCGCCTTCTGGCGCCAGCATTTCGTGTTGGAGGAGGGGATGCTTGAGGTGGACTGCCCATGTGTGACTCCTGAAGTTGTCTTGAAGGCCTCTGGCCATGTCGACAAATTTACAGATCTGATGGTTAAAGATGAAAAGACTGGCACCTGCTATCGTGCTGATCATTTGCTCAAGGACTTCTGCAAGGATAAGCTTGAGAAGGACAATACATTGTCACCAGAGAAGACAGCAGAATTCAACCATGTTCTTGCTGTCTTGGATG ] [+] EMBL CB654280 [ AACCCTCCTCCGCCGCCGCCGCGGTCTTACTCCGCCGCCAGCTCGCCGCAGGCATGGCGGCCGCGCCGGCGTCGTCCGCCTCCGCGGCGGGGAACCGCGAGGCGTTCCGCGTGGCGGTGACCAACACGCTGGAGCGCCGCCTCTTCTACGTCCCGTCCTTCAAGATCTACGGCGGCGTCGCGGGCCTCTACGACTACGGCCCTCCCGGCTGCGCCGTCAAGGCCAACGTCCTCGCCTTCTGGCGCCAGCATTTCGTGTTGGAGGAGGGGATGCTTGAGGTGGACTGCCCATGTGTGACTCCTGAAGTTGTCTTGAAGGCCTCTGGCCATGTCGACAAATTTACAGATCTGATGGTTAAAGATGAAAAGACTGGCACCTGCTATCGTGCTGATCATTTGCTCAAGGACTTCTGCAAGGATAAGCTTGAGAAGGACAATACATTGTCACCAGAGAAGACAGCAGAATTCAACCATGTTCTTGCTGTCTTGGATGATCTGTCTGCAGAACAGTTGGGTGCTAAGATCAAGGAGTATGGCATTGTTGCTCCAGACACCAAGAACCCGTTGTCAGACCCATACCCCTTTAACCTCATGTTTCAAACTTCCATTGGACCATCAGGCTTGAGCCCAGGGTATATGAGGCCAGAGACAGCACAAGGTATCTTTGTAAACTTCAAAGACTTGTATTACTACAACGGCAACAAGCTACCCTTTGCTGCAGCACAGATTGGTCAGGCCTTCAGAAATGAGATATCTCCTCGCCAAGGACTTCTGAGAGTCCGAG] [+] EMBL CB676656 [ CTTCGCCCCTTCCGCCGCGGTCTTACTCCGCCGCCAGCTCGCCGCAGGCATGGCGGCCGCGCCGGCGTCGTCCGCGTCCGCGGCGGGGAACCGCGAGGCGTTCCGCGTGGCGGTGACCAACACGCTGGAGCGCCGCCTCTTCTACGTCCCGTCCTTCAAGATCTACGGCGGCGTCGCGGGCCTCTACGACTACGGCCCTCCCGGCTGCGCCGTCAAGGCCAACGTCCTCGCCTTCTGGCGCCAGCATTTCGTGTTGGAGGAGGGGATGCTTGAGGTGGACTGCCCATGTGTGACTCCTGAAGTTGTCTTGAAGGCCTCTGGCCATGTCGACAAATTTACAGATCTGATGGTTAAAGATGAAAAGACTGGCACCTGCTATCGTGCTGATCATTTGCTCAAGGACTTCTGCAAGGATAAGCTTGAGAAGGACAATACATTGTCACCAGAGAAGACAGCAGAATTCAACCATGTTCTTGCTGTCTTGGATGATCTGTCTGCAGAACAGTTGGGTGCTAAGATCAAGGAGTATGGCATTGTTGCTCCAGACACCAAGAACCCGTTGTCAGACCCATACCCCTTTAACCTCATGTTTCAAACTTCCATTGGACCATCAGGCTTGAGCCCAGGGTATATGAGGCCAGAGACAGCACAAGGTATCTTTGTAAACTTCAAAGACTTGTATTACTACAACGGCAACAAGCTACCCTTTGCTGCAGCACAGATTGGTCAGGCCTTCAGAAATGA ] consensusID : consensus_9130#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 723 fasta sequence [GCCGCCACAATCCCGCTCGCCTGAACCCTTCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCGGTCTTACTCCGCCGCCAGCTTGCCGCAGGCATGGCGGCCGCGCCGGCGTCGTCCGCGTCCGCGGCGGGGAACCGCGAGGCGTTCCGCGTGGCGGTGACCAACACGCTGGAGCGCCGCCTCTTCTACGTCCCGTCCTTCAAGATCTACGGCGGCGTCGCGGGCCTCTACGACTACGGCCCTCCCGGCTGCGCCGTCAAGGCCAACGTCCTCGCCTTCTGGCGCCAGCATTTCGTGTTGGAGGAGGGGATGCTTGAGGTGGACTGCCCATGTGTGACTCCTGAAGTTGTCTTGAAGGCCTCTGGCCATGTCGACAAATTTACAGATCTGATGGTTAAAGATGAAAAGACTGGCACCTGCTATCGTGCTGATCATTTGCTCAAGGACTTCTGCAAGGATAAGCTTGAGAAGGACAATACACTGCCACCAGAGAAGACAGCAGAATTCAACCATGTTCTTGCTGTCTTGGATGATCTGTCTGCAGAACAGTTGGGTGCTAAGATCAAGGAGTATGGCATTGTTGCTCCAGACACCAAGAACCCGTTGTCAGACCCATACCCCTTTAACCTCATGTTTCAAACTTCCATTGGACCATCAGGCTTGAGCCCAGGGTATATGAGGCCAGAGACAGCACAAGGTATCTTTGTAAACTTCAAAGACTT] [+] EMBL CB627046 [GCCGCCACAATCCCGCTCGCCTGAACCCTTCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCGGTCTTACTCCGCCGCCAGCTTGCCGCAGGCATGGCGGCCGCGCCGGCGTCGTCCGCGTCCGCGGCGGGGAACCGCGAGGCGTTCCGCGTGGCGGTGACCAACACGCTGGAGCGCCGCCTCTTCTACGTCCCGTCCTTCAAGATCTACGGCGGCGTCGCGGGCCTCTACGACTACGGCCCTCCCGGCTGCGCCGTCAAGGCCAACGTCCTCGCCTTCTGGCGCCAGCATTTCGTGTTGGAGGAGGGGATGCTTGAGGTGGACTGCCCATGTGTGACTCCTGAAGTTGTCTTGAAGGCCTCTGGCCATGTCGACAAATTTACAGATCTGATGGTTAAAGATGAAAAGACTGGCACCTGCTATCGTGCTGATCATTTGCTCAAGGACTTCTGCAAGGATAAGCTTGAGAAGGACAATACACTGCCACCAGAGAAGACAGCAGAATTCAACCATGTTCTTGCTGTCTTGGATGATCTGTCTGCAGAACAGTTGGGTGCTAAGATCAAGGAGTATGGCATTGTTGCTCCAGACACCAAGAACCCGTTGTCAGACCCATACCCCTTTAACCTCATGTTTCAAACTTCCATTGGACCATCAGGCTTGAGCCCAGGGTATATGAGGCCAGAGACAGCACAAGGTATCTTTGTAAACTTCAAAGACTT] [+] EMBL CB626833 [ CCCTTCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCGGTCTTACTCCGCCGCCACCTTGCCGCAGGCATGGCGGCCGCGCCGGCGTCGTCCGCGTCCGCGGCGGGGAACCGCGAGGCGTTCCGCGTGGCGGTGACCAACACGCTGGAGCGCCGCCTCTTCTACGTCCCGTCCTTCAAGATCTACGGCGGCGTCGCGGGCCTCTACGACTACGGCCCTCCCGGCTGCGCCGTCAAGGCCAACGTCCTCGCCTTCTGGCGCCAGCATTTCGTGTTGGAGGAGGGGATGCTTGAGGTGGACTGCCCATGTGTGACTCCTGAAGTTGTCTTGAAGGCCTCTGGCCATGTCGACAAATTTACAGATCTGATGGTTAAAGATGAAAAGACTGGCACCTGCTATCGTGCTGATCATTTGCTCAAGGACTTCTGCAAGGATAAGCTTGAGAAGGACAATACACTGCCACCAGAGAAGACAGCAGAATTCAACCATGTTCTTGCTGTCTTGGATGATCTGTCTGCAGAACAGTTGGGTGCTAAGATCAAGGAGTATGGCATTGTTGCTCCAGACACCAAGAACCCGTTGTCAGACCCATACCCCTTTAACCTCATGTTTCAAACTTCCATTGGACCATCAGGCTTGAGCCC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9130#0 CTCTCCTCCGCCTCACGCGCACTCGCCGCCGCAAAACCCCGCTCGCCTGAACCCTTCGCC 60 consensus_9130#1 ------GCCGCCACAATCCCGCTCGCCTGAACCCTTCGCCGC-CGCC-GCCGCCGCCGCC 52 ***** ** * * ****** * * **** **** * ** **** consensus_9130#0 GCCGCCGCCGCGGTCTTACTCCGCCGCCAGCTCGCCGCAGGCATGGCGGCCGCGCCGGCG 120 consensus_9130#1 GCCGCCGCCGCGGTCTTACTCCGCCGCCAGCTTGCCGCAGGCATGGCGGCCGCGCCGGCG 112 ******************************** *************************** consensus_9130#0 TCGTCCGCGTCCGCGGCGGGGAACCGCGAGGCGTTCCGCGTGGCGGTGACCAACACGCTG 180 consensus_9130#1 TCGTCCGCGTCCGCGGCGGGGAACCGCGAGGCGTTCCGCGTGGCGGTGACCAACACGCTG 172 ************************************************************ consensus_9130#0 GAGCGCCGCCTCTTCTACGTCCCGTCCTTCAAGATCTACGGCGGCGTCGCGGGCCTCTAC 240 consensus_9130#1 GAGCGCCGCCTCTTCTACGTCCCGTCCTTCAAGATCTACGGCGGCGTCGCGGGCCTCTAC 232 ************************************************************ consensus_9130#0 GACTACGGCCCTCCCGGCTGCGCCGTCAAGGCCAACGTCCTCGCCTTCTGGCGCCAGCAT 300 consensus_9130#1 GACTACGGCCCTCCCGGCTGCGCCGTCAAGGCCAACGTCCTCGCCTTCTGGCGCCAGCAT 292 ************************************************************ consensus_9130#0 TTCGTGTTGGAGGAGGGGATGCTTGAGGTGGACTGCCCATGTGTGACTCCTGAAGTTGTC 360 consensus_9130#1 TTCGTGTTGGAGGAGGGGATGCTTGAGGTGGACTGCCCATGTGTGACTCCTGAAGTTGTC 352 ************************************************************ consensus_9130#0 TTGAAGGCCTCTGGCCATGTCGACAAATTTACAGATCTGATGGTTAAAGATGAAAAGACT 420 consensus_9130#1 TTGAAGGCCTCTGGCCATGTCGACAAATTTACAGATCTGATGGTTAAAGATGAAAAGACT 412 ************************************************************ consensus_9130#0 GGCACCTGCTATCGTGCTGATCATTTGCTCAAGGACTTCTGCAAGGATAAGCTTGAGAAG 480 consensus_9130#1 GGCACCTGCTATCGTGCTGATCATTTGCTCAAGGACTTCTGCAAGGATAAGCTTGAGAAG 472 ************************************************************ consensus_9130#0 GACAATACATTGTCACCAGAGAAGACAGCAGAATTCAACCATGTTCTTGCTGTCTTGGAT 540 consensus_9130#1 GACAATACACTGCCACCAGAGAAGACAGCAGAATTCAACCATGTTCTTGCTGTCTTGGAT 532 ********* ** *********************************************** consensus_9130#0 GATCTGTCTGCAGAACAGTTGGGTGCTAAGATCAAGGAGTATGGCATTGTTGCTCCAGAC 600 consensus_9130#1 GATCTGTCTGCAGAACAGTTGGGTGCTAAGATCAAGGAGTATGGCATTGTTGCTCCAGAC 592 ************************************************************ consensus_9130#0 ACCAAGAACCCGTTGTCAGACCCATACCCCTTTAACCTCATGTTTCAAACTTCCATTGGA 660 consensus_9130#1 ACCAAGAACCCGTTGTCAGACCCATACCCCTTTAACCTCATGTTTCAAACTTCCATTGGA 652 ************************************************************ consensus_9130#0 CCATCAGGCTTGAGCCCAGGGTATATGAGGCCAGAGACAGCACAAGGTATCTTTGTAAAC 720 consensus_9130#1 CCATCAGGCTTGAGCCCAGGGTATATGAGGCCAGAGACAGCACAAGGTATCTTTGTAAAC 712 ************************************************************ consensus_9130#0 TTCAAAGACTTGTATTACTACAACGGCAACAAGCTACCCTTTGCTGCAGCACAGATTGGT 780 consensus_9130#1 TTCAAAGACTT------------------------------------------------- 723 *********** consensus_9130#0 CAGGCCTTCAGAAATGAGATATCTCCTCGCCAAGGACTTCTGAGAGTCCGAG 832 consensus_9130#1 ---------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||