These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9164#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 826 fasta sequence [CCGCTATTACTACCAGCAGATTGACGACACCGATCGACCGATCGATCGTACTACGTGCAGAGAGCTTAGCTAGCTGCGACGCACGCACGGTTTGTACAAGGTACAGTATAGTATGACACCGACCGTCGCGACCACCACCCCGGCCGCCGCGGCGGCGACGACGGCGGCGGCGGCCGAGGTGAAGCCGGCGAAGCGCTCCGTCGGCCTCGGCCTCCCCGCGCTTCCGCCATTATTGCCCGGCCTCGCCTCCCACGGCCAGCCCCGTGTCGCGTCCTTCTGCAAGAGGCTGGCGAGGAACGTGGTGGCCATGGCGGCGGGGGAGGCGCCGGCGGCGCCGCTCGCCGCCAACGCGGAGATCACCGAGTTCATCAACGCCCTCAAACAAGAGTGGGACAGGATTGAGGACAAGTACGCGGTGACGACGCTGGCGGTCGCTGCGTCGCTCGGGATGTGGAGCGCCGGCGGAGTTGTATCGGCAATTGACAGGCTTCCTATCGTTCCTGGTCTCATGGAAGCTGTTGGCATTGGCTACAGCGGGTGGTTTGCATACCGGAACCTGCTGTTCAAGCCTGACAGGGAAGCTTTCTTTGCAAAGGTTAGGGAGGTCTACGAGGATATAATCAGCGGTTAACAGAGATACTACTTATATACAACTTCAGTTCAAGGGAGGCTGCTACTGGATTAATTATCTGTACTGTATCACAGCATAGCATCTAATTTAATTGCTCTTACTCAATGTATGTCTATATAAGTTGGACATTACTGCTAAATAACATTTTTCAGAATGTTTACTCAGAGTTGAAAAAAAAAAAAACTCGAGACTAGT] [+] EMBL CF325108 [CCGCTATTACTACCAGCAGATTGACGACACCGATCGACCGATCGATCGTACTACGTGCAGAGAGCTTAGCTAGCTGCGACGCACGCACGGTTTGTACAAGGTACAGTATAGTATGACACCGACCGTCGCGACCACCACCCCGGCCGCCGCGGCGGCGACGACGGCGGCGGCGGCCGAGGTGAAGCCGGCGAAG ] [+] EMBL CF324976 [ AGCAGATTGACGACACCGATCGACCGATCGATCGTACTACGTGCAGAGAGCTTAGCTAGCTGCGACGCACGCACGGTTTGTACAAGGTACAGTATAGTATGACACCGACCGTCGCGACCACCACCCCGGCCGCCGCGGCGGCGACGACGGCGGCGGCGGCCGAGGTGAAGCCGGCGAAGCGCTCCGTCGGCCTCGGCCTCCCCGTGCTTCCGCCATTATT ] [+] EMBL AK066849 [ GATCGTACTACGTGCAGAGAGCTTAGCTAGCTGCGGCGCACGCACGGTTTGTACAAGGTACAGTATAGTATGACACCGACCGTCGCGACCACCACCCCGGCCGCCGCGGCGGCGACGACGGCGGCGGCGGCCGAGGTGAAGCCGGCGAAGCGCTCCGTCGGCCTCGGCCTCCCCGCGCTTCCGCCATTATTGCCCGGCCTCGCCTCCCACGGCCAGCCCCGTGTCGCGTCCTTCTGCAAGAGGCTGGCGAGGAACGTGGTGGCCATGGCGGCGGGGGAGGCGCCGGCGGCGCCGCTCGCCGCCAACGCGGAGATCACCGAGTTCATCAACGCCCTCAAACAAGAGTGGGACAGGATTGAGGACAAGTACGCGGTGACGACGCTGGCGGTCGCTGCGTCGCTCGGGATGTGGAGCGCCGGCGGAGTTGTATCGGCAATTGACAGGCTTCCTATCGTTCCTGGTCTCATGGAAGCTGTTGGCATTGGCTACAGCGGGTGGTTTGCATACCGGAACCTGCTGTTCAAGCCTGACAGGGAAGCTTTCTTTGCAAAGGTTAGGGAGGTCTACGAGGATATAATCAGCGGTTAACAGAGATACTACTTATATACAACTTCAGTTCAAGGGAGGCTGCTACTGGATTAATTATCTGTACTGTATCACAGCATAGCATCTAATTTAATTGCTCTTACTCAATGTATGTCTATATAAGTTGGACATTACTGCTAAATAACATTTTTCAGAATGTTTACTCAGAGTTGAA ] [+] EMBL AK103995 [ GTACTACGTGCAGAGAGCTTAGCTAGCTGCGACGCACGCACGGTTTGTACAAGGTACAGTATAGTATGACACCGACCGTCGCGACCACCACCCCGGCCGCCGCGGCGGCGACGACGGCGGCGGCGGCCGAGGTGAAGCCGGCGAAGCGCTCCGTCGGCCTCGGCCTCCCCGCGCTTCCGCCATTATTGCCCGGCCTCGCCTCCCGCGGCCAGCCCCGTGTCGCGTCCTTCTGCAAGAGGCTGGCGAGGAACGTGGTGGCCATGGCGGCGGGGGAGGCGCCGGCGGCGCCGCTCGCCGCCAACGCGGAGATCACCGAGTTCATCAACGCCCTCAAACAAGAGTGGGACAGGATTGAGGACAAGTACGCGGTGACGACGCTGGCGGTCGCTGCGTCGCTCGGGATGTGGAGCGCCGGCGGAGTTGTATCGGCAATTGACAGGCTTCCTATCGTTCCTGGTCTCATGGAAGCTGTTGGCATTGGCTACAGCGGGTGGTTTGCATACCGGAACCTGCTGTTCAAGCCTGACAGGGAAGCTTTCTTTGCAAAGGTTAGGGAGGTCTACGAGGATATAATCAGCGGTTAACAGAGATACTACTTATATACAACTTCAGTTCAAGGGAGGCTGCTACTGGATTAATTATCTGTACTGTATCACAGCATAGCATCTAATTTAATTGCTCTTACTCAATGTATGTCTATATAAGTTGGACATTACTGCTAAATAACATTTTTCAGAAT ] [-] EMBL CF197308 [ GAGCGCCGGCGGAGTTGTATCGGCAATTGACAGGCTTCCTATCGTTCCTGGTCTCATGGAAGCTGTTGGCATTGGCTACAGCGGGTGGTTTGCATACCGGAACCTGCTGTTCAAGCCTGACAGGGAAGCTTTCTTTGCAAAGGTTAGGGAGGTCTACGAGGATATAATCAGCGGTTAACAGAGATACTACTTATATACAACTTCAGTTCAAGGGAGGCTGCTACTGGATTAATTATCTGTACTGTATCACAGCATAGCATCTAATTTAATTGCTCTTACTCAATGTATGTCTATATAAGTTGGACATTACTGCTAAATAACATTTTTCAGAATGTTTACTCAGAAAAAAAAAAAAAAAAAACTCGAGACTAGT] consensusID : consensus_9164#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 199 fasta sequence [GAGGACGAGACAAGGGGGAGGATATAATCACCGGTTAACAGAGATACTACTTATATACAACTTCAGTTCAAGGGAGGCTGCTACTGGATTAATTATCTGTACTGTATCACAGCATAGCATCTAATTTAATTGCTCTTACTCAATGTATGTCTATATAAGTTGGACATTACTGCTAAATAACATTTTTCAAAAAAAAAAA] [-] EMBL CA761603 [GAGGACGAGACAAGGGGGAGGATATAATCACCGGTTAACAGAGATACTACTTATATACAACTTCAGTTCAAGGGAGGCTGCTACTGGATTAATTATCTGTACTGTATCACAGCATAGCATCTAATTTAATTGCTCTTACTCAATGTATGTCTATATAAGTTGGACATTACTGCTAAATAACATTTTTCAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9164#0 CCGCTATTACTACCAGCAGATTGACGACACCGATCGACCGATCGATCGTACTACGTGCAG 60 consensus_9164#1 ------------------------------------------------------------ consensus_9164#0 AGAGCTTAGCTAGCTGCGACGCACGCACGGTTTGTACAAGGTACAGTATAGTATGACACC 120 consensus_9164#1 ------------------------------------------------------------ consensus_9164#0 GACCGTCGCGACCACCACCCCGGCCGCCGCGGCGGCGACGACGGCGGCGGCGGCCGAGGT 180 consensus_9164#1 ------------------------------------------------------------ consensus_9164#0 GAAGCCGGCGAAGCGCTCCGTCGGCCTCGGCCTCCCCGCGCTTCCGCCATTATTGCCCGG 240 consensus_9164#1 ------------------------------------------------------------ consensus_9164#0 CCTCGCCTCCCACGGCCAGCCCCGTGTCGCGTCCTTCTGCAAGAGGCTGGCGAGGAACGT 300 consensus_9164#1 ------------------------------------------------------------ consensus_9164#0 GGTGGCCATGGCGGCGGGGGAGGCGCCGGCGGCGCCGCTCGCCGCCAACGCGGAGATCAC 360 consensus_9164#1 ------------------------------------------------------------ consensus_9164#0 CGAGTTCATCAACGCCCTCAAACAAGAGTGGGACAGGATTGAGGACAAGTACGCGGTGAC 420 consensus_9164#1 ------------------------------------------------------------ consensus_9164#0 GACGCTGGCGGTCGCTGCGTCGCTCGGGATGTGGAGCGCCGGCGGAGTTGTATCGGCAAT 480 consensus_9164#1 ------------------------------------------------------------ consensus_9164#0 TGACAGGCTTCCTATCGTTCCTGGTCTCATGGAAGCTGTTGGCATTGGCTACAGCGGGTG 540 consensus_9164#1 ------------------------------------------------------------ consensus_9164#0 GTTTGCATACCGGAACCTGCTGTTCAAGCCTGACAGGGAAGCTTTCTTTGCAAAGGTTAG 600 consensus_9164#1 ---------------------------------------------------GAGGACGAG 9 * * ** consensus_9164#0 GGAGGTCTACGAGGATATAATCAGCGGTTAACAGAGATACTACTTATATACAACTTCAGT 660 consensus_9164#1 ACAAGG--GGGAGGATATAATCACCGGTTAACAGAGATACTACTTATATACAACTTCAGT 67 * * ************* ************************************ consensus_9164#0 TCAAGGGAGGCTGCTACTGGATTAATTATCTGTACTGTATCACAGCATAGCATCTAATTT 720 consensus_9164#1 TCAAGGGAGGCTGCTACTGGATTAATTATCTGTACTGTATCACAGCATAGCATCTAATTT 127 ************************************************************ consensus_9164#0 AATTGCTCTTACTCAATGTATGTCTATATAAGTTGGACATTACTGCTAAATAACATTTTT 780 consensus_9164#1 AATTGCTCTTACTCAATGTATGTCTATATAAGTTGGACATTACTGCTAAATAACATTTTT 187 ************************************************************ consensus_9164#0 CAGAATGTTTACTCAGAGTTGAAAAAAAAAAAAACTCGAGACTAGT 826 consensus_9164#1 CAAAAAAAAAAA---------------------------------- 199 ** ** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||