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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9186#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1143 fasta sequence
[AAATTGCATTCTGCAGCGACAATCCTCTCTCTTACAAAGCTGGAAATAAAACTGAATGGAGTTACTACAAGGCAAGAATTGTTCATTTCCTTGTAGACTCTATGCAGTGCTTATGAGACCTTCATCTTATTTCCATGCTTCACCTTTTCTTTTAATTTTACGTGCTTAGTTTATGCCTAAGTCCCATGATTGTGTGTTTGATTATTCCTTTATTTTGTGAACCGTGAACTGTAGTTTACTGTTGGATAGTTAGCATGATAAGAACAGTTATCAGCTCTTAATTTTGCACCATGGAAAGATGGAACAAAATTAGAGAATCAAAGTTCCATTACTTTTCAAGCATGACTCATTTATGAACACTTCTACTCCTGAAGAACAGAATTTTTGCCTAGATAGCTACCAGTTGAATCTGGCATGTTCATAATGCTTATAGTCATTCCTGTAGCTTGGTGATGCTTTTTGCTACATACTAATACCTAGTAGTTCATAACTTTTGTAGTAGAGCTTGATCCTTTTTTTTTTTTGGATCAAAGGGCAAAACGAGCTTGATCCAATTTGATGTTTAAATACTTCTAAACGTAGGGGCATCGTCCATATTTATCTCATATGTTCTTTTTGGATAAACAGGTGGTCATTCCTC-TGCACCAGCTAAGA-GCGGCTAATCCTTCAGTGAGCAAAGTAAACCCTGCTGAAAAGTATATTCAGGTTGTTTCAGTTGAAGGCCACGAGTTCTGGTTCATGGGTTTTCTGATGTATGACAAAGCCGTGTGTAGCCTCCAAGAAGCCATGAATAGTGCCCGCGAGATGCAACCGTAGATACCAAAGCAGAAGTTTCAGTCGAGAGTCATCCTGATCCTGTGTAGCAATCCTGGGGGGGCATCTCTATTTCCGCGATCGATTCCTTCGCTTCTGAGTGTCTCCTGTTTCAGATCCTTCGCGGCTGTGTGCTTCGGAGCCATTTGAGACGATACACTCACTAGCTTCTATACGTGTTCGAAATGTGTTCTTTTTGTTGTGGCCTTCCGCGTGTTGTAATGATGGGATGTATGGGAAAACA-CTGGAGCTGTCCATTTTGAATGCTTTTATTATCAACACTTGAAAATGT-GCAGTAAAAAATGGATGTTTATGGGAAAAAAAAAAAAA]
[+] EMBL AK058667 [AAATTGCATTCTGCAGCGACAATCCTCTCTCTTACAAAGCTGGAAATAAAACTGAATGGAGTTACTACAAGGCAAGAATTGTTCATTTCCTTGTAGACTCTATGCAGTGCTTATGAGACCTTCATCTTATTTCCATGCTTCACCTTTTCTTTTAATTTTACGTGCTTAGTTTATGCCTAAGTCCCATGATTGTGTGTTTGATTATTCCTTTATTTTGTGAACCGTGAACTGTAGTTTACTGTTGGATAGTTAGCATGATAAGAACAGTTATCAGCTCTTAATTTTGCACCATGGAAAGATGGAACAAAATTAGAGAATCAAAGTTCCATTACTTTTCAAGCATGACTCATTTATGAACACTTCTACTCCTGAAGAACAGAATTTTTGCCTAGATAGCTACCAGTTGAATCTGGCATGTTCATAATGCTTATAGTCATTCCTGTAGCTTGGTGATGCTTTTTGCTACATACTAATACCTAGTAGTTCATAACTTTTGTAGTAGAGCTTGATCCTTTTTTTTTTTTGGATCAAAGGGCAAAACGAGCTTGATCCAATTTGATGTTTAAATACTTCTAAACGTAGGGGCATCGTCCATATTTATCTCATATGTTCTTTTTGGATAAACAGGTGGTCATTCCTC TGCACCAGCTAAGA GCGGCTAATCCTTCAGTGAGCAAAGTAAACCCTGCTGAAAAGTATATTCAGGTTGTTTCAGTTGAAGGCCACGAGTTCTGGTTCATGGGTTTTCTGATGTATGACAAAGCCGTGTGTAGCCTCCAAGAAGCCATGAATAGTGCCCGCGAGATGCAACCGTAGATACCAAAGCAGAAGTTTCAGTCGAGAGTCATCCTGATCCTGTGTAGCAATCCTGGGGGGGCATCTCTATTTCCGCGATCGATTCCTTCGCTTCTGAGTGTCTCCTGTTTCAGATCCTTCGCGGCTGTGTGCTTCGGAGCCATTTGAGACGATACACTCACTAGCTTCTATACGTGTTCGAAATGTGTTCTTTTTGTTGTGGCCTTCCGCGTGTTGTAATGATGGGATGTATGGGAAAACA CTGGAGCTGTCCATTTTGAATGCTTTTATTATCAACAC ]
[+] EMBL BM420340 [ gttactACAAGTGTTCATTCCTCTTGCACCAGCTAAGACGCGGCTAATCCTTCAGTGA CAAAGTAAACCCTGCTGAAAAGTATATTCAGGTTGTTTCAGTTGAAGGCCACGAGTTCTGGTTCATGGGTTTTCTGATGTATGACAAAGCCGTGTGTAGCCTCCAAGAAGCCATGAATAGTGCCCGCGAGATGCAACCGTAGATACC AAGCAGAAGTTTCAGTCGAGAGTCATCCTGATCCTGTGTA CAATCCTGGGGGGGCATCTCTATTTCCGCGATCGATTCCTTCGCTTCTGAGTGTCTCCTGTTTCAGATCCTTCGCGGGTGTGTGCTTCTGAGCCATTTGAGACGATACACTCACTAGCTTCTATACGTGTTCGAAATGTGTTCTTTTT TTGT GCCTTCCGCGTGTTGTAATGATGGGATGTATGGGAAAACACCTGGAGCTGTCCATTTTGAATGCTTTTATTATCAACACTTGAAAATGT GCAGTAAAAA ]
[+] EMBL CF327518 [ GTGTAGCCTCCAAGAAGCCATGAATAGTGCCCGCGAGATGCAACCGTAGATACCAAAGCAGAAGTTTCAGTCGAGAGTCATCCTGATCCTGTGTAGCAATCCTGGGGGGGCATCTCTATTTCCGCGATCGATTCCTTCGCTTCTGAGTGTCTCCTGTTTCAGATCCTTCGCGGCTGTGTGCTTCGGAGCCATTTGAGACGATACACTCACTAGCTTCTATACGTGTTCGAAATGTGTTCTTTTTGTTGTGGCCTTCCGCGTGTTGTAATGATGGGATGTATGGGAAAACA CTGGAGCTGTCCATTTTGAATGCTTTTATTATGAACACTTGAAAATGTGGCAGTATCGGATGGATGTTTATGGGAAAAAAAAAAAAA]
consensusID : consensus_9186#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 757 fasta sequence
[GCTCAAGGAACTAAAGTCTTAGCAGAAGGTGGCTATGAAAAAATATTCAGGCAAACTTTTGAGGTTTTTCCTGAGGAGCAGCTGAAAATATTTTATGCATGCTATTTATCAACATTTGCTGGTCCTGTCATGGGAGTCATGTACATTTTTACAGCTAAAATTGCATTTTGCAGGGACAATCCTTTTTTTTACAAAGCTGGAAATAAAACTGAATGGAGTTACTACAAGGTGGTCATTCCTTTGCACCAGCTAAGAGCGGGTAATCCTTCAGTGAGCAAAGTAAACCCTGCTGAAAAGTATATTCAGGTTGTTTCAGTTGAAGGCCACGAGTTTTGGTTCATGGGTTTTTTGATGTATGACAAAGCCGTGTGTAGCCTCCAAGAAGCCATGAATAGTGCCCGCGAGATGCAACCGTAGATACCAAAGCAGAAGTTTCAGTCGAGAGTCATCCTGATCCTGTGTAGCAATCCTGGGGGGGCATTTTTATTTCCGCGATCGATTCCTTCGCTTTTGAGTGTTTCCTGTTTCAGATCCTTCGCGGCTGTGTGCTTTGGAGCCATTTGAGACGATACACTCACTAGCTTTTATACGTGTTCGAAATGTGTTTTTTTTGTTGTGGCCTTCCGCGTGTTGTAATGATGGGATGTATGGGAAAACACTGGAGCTGTCCATTTTGAATGCTTTTATTATCAACACTTGAAAATGTGGCAGTATCGGATGGATGTTTATGGGAAAAAAAAAAAAAAAAAAAAAGGGA]
[-] EMBL CB657281 [GCTCAAGGAACTAAAGTCTTAGCAGAAGGTGGCTATGAAAAAATATTCAGGCAAACTTTTGAGGTTTTTCCTGAGGAGCAGCTGAAAATATTTTATGCATGCTATTTATCAACATTTGCTGGTCCTGTCATGGGAGTCATGTACATTTTTACAGCTAAAATTGCATTTTGCAGGGACAATCCTTTTTTTTACAAAGCTGGAAATAAAACTGAATGGAGTTACTACAAGGTGGTCATTCCTTTGCACCAGCTAAGAGCGGGTAATCCTTCAGTGAGCAAAGTAAACCCTGCTGAAAAGTATATTCAGGTTGTTTCAGTTGAAGGCCACGAGTTTTGGTTCATGGGTTTTTTGATGTATGACAAAGCCGTGTGTAGCCTCCAAGAAGCCATGAATAGTGCCCGCGAGATGCAACCGTAGATACCAAAGCAGAAGTTTCAGTCGAGAGTCATCCTGATCCTGTGTAGCAATCCTGGGGGGGCATTTTTATTTCCGCGATCGATTCCTTCGCTTTTGAGTGTTTCCTGTTTCAGATCCTTCGCGGCTGTGTGCTTTGGAGCCATTTGAGACGATACACTCACTAGCTTTTATACGTGTTCGAAATGTGTTTTTTTTGTTGTGGCCTTCCGCGTGTTGTAATGATGGGATGTATGGGAAAACACTGGAGCTGTCCATTTTGAATGCTTTTATTATCAACACTTGAAAATGTGGCAGTATCGGATGGATGTTTATGGGAAAAAAAAAAAAAAAAAAAAAGGGA]
consensusID : consensus_9186#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 636 fasta sequence
[TGCAGCGACCATCCTCTCTCTTACACAAGCTGGCAAATAAAACTGAATGGAGCTTACTACAAGGTGGTCATTCCTCTGCACCCAGCTAAGAGCGGCTAATCCTTCAGTGAGCCAACGTAAACCCTGCTGAAAAGTATATTCAGGTTGTTTCAGCTTGAAGGCCACGAGTTCTGGTTCATGGGTTTTCTGATGTATGACAAGCCGTGCTGTAGCCTCCCAGAAGCCATGAATAGTGCCCGCGAGATGCAACCGTAGATACCAAAGCAGAAGTTTCA-TCGAGAGTCATCCTGATCCTGTGTAGCAATCCTGGGGGGGCATCTCTATTTCCGCGATCGATTCCTTCGCTTCTGAGTGTCTCCTGTTTCAGATCCTTCGCGGGTGTGTGCTTCTGAGCCATTTGAGACGATACACTCACTAGCTTCTATACGTGTTCGAAATGTGTTCTTTTTGTTGTGGCCTTCCGCGTGTTGTAATGATGGGATGTATGGGAAAACACTGGAGCTGTCCCTTTTGAATGCTTTTATTATCAACA-CTTGAAAAAGTGGCAGTATCGGATGGATGTTTATGGGAACGAATCTCTCCCACAGAAAAAAAAAAGAACTATACATGTATATACAGCCCAAGTTTTCGTCAAAA]
[+] EMBL BI811878 [TGCAGCGACCATCCTCTCTCTTACACAAGCTGGCAAATAAAACTGAATGGAGCTTACTACAAGGTGGTCATTCCTCTGCACCCAGCTAAGAGCGGCTAATCCTTCAGTGAGCCAACGTAAACCCTGCTGAAAAGTATATTCAGGTTGTTTCAGCTTGAAGGCCACGAGTTCTGGTTCATGGGTTTTCTGATGTATGACAAGCCGTGCTGTAGCCTCCCAGAAGCCATGAATAGTGCCCGCGAGATGCAACCGTAGATACCAAAGCAGAAGTTTCA TCGAGAGTCATCCTGATCCTGTGTAGCAATCCTGGGGGGGCATCTCTATTTCCGCGATCGATTCCTTCGCTTCTGAGTGTCTCCTGTTTCAGATCCTTCGCGGGTGTGTGCTTCTGAGCCATTTGAGACGATACACTCACTAGCTTCTATACGTGTTCGAAATGTGTTCTTTTTGTTGTGGCCTTCCGCGTGTTGTAATGATGGGATGTATGGGAAAACACTGGAGCTGTCCCTTTTGAATGCTTTTATTATCAACA CTTGAAAAA ]
[+] EMBL BI813317 [ AAAAGTATATTCAGGTTGTTTCAG TTGAAGGCCACGAGTTCTGGTTCATGGGTTTTCTGATGTATGACAAACCGTG TGTAGCCTCCAAGAAGCCATGAATAGTGCCCGCGAGATGCAACCGTAGATACCAAAGCAGAAGTTTCAGTCGAGAGTCATCCTGATCCTGTGTACCAATCCTGGGGGGGCATCTCTATTTCCGCGATCGATTCCTTCGCTTCTGAGTGTCTCCTGTTTCAGATCCTTCGCGGGTGTGTGCTTCTGAGCCATTTGAGACGATACACTCACTAGCTTCTATACGTGTTCGAAATGTGTTCTTTTTGTTGTGGCCTTCCGCGTGTTGTAATGATGGGATGTATGGGAAAACACTGGAGCTGTCCATTTTGAATGCTTTTATTATCAACAGCTTGAAAATGTGGCAGTATCGGATGGATGTTTATGGGAACGAATCTCTCCCACAGAAAAAAAAAAGAACTATACATGTATATACAGCCCAAGTTTTCGTCAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9186#1 ------------------------------------------------------------
consensus_9186#2 ------------------------------------------------------------
consensus_9186#0 AAATTGCATTCTGCAGCGACAATCCTCTCTCTTACAAAGCTGGAAATAAAACTGAATGGA 60
consensus_9186#1 ------------------------------------------------------------
consensus_9186#2 ------------------------------------------------------------
consensus_9186#0 GTTACTACAAGGCAAGAATTGTTCATTTCCTTGTAGACTCTATGCAGTGCTTATGAGACC 120
consensus_9186#1 ------------------------------------------------------------
consensus_9186#2 ------------------------------------------------------------
consensus_9186#0 TTCATCTTATTTCCATGCTTCACCTTTTCTTTTAATTTTACGTGCTTAGTTTATGCCTAA 180
consensus_9186#1 ------------------------------------------------------------
consensus_9186#2 ------------------------------------------------------------
consensus_9186#0 GTCCCATGATTGTGTGTTTGATTATTCCTTTATTTTGTGAACCGTGAACTGTAGTTTACT 240
consensus_9186#1 ------------------------------------------------------------
consensus_9186#2 ------------------------------------------------------------
consensus_9186#0 GTTGGATAGTTAGCATGATAAGAACAGTTATCAGCTCTTAATTTTGCACCATGGAAAGAT 300
consensus_9186#1 ------------------------------------------------------------
consensus_9186#2 ------------------------------------------------------------
consensus_9186#0 GGAACAAAATTAGAGAATCAAAGTTCCATTACTTTTCAAGCATGACTCATTTATGAACAC 360
consensus_9186#1 ------GCTCAAGGAACTAAAGTCTTAGC-AGAAGGTGGCTATGAAAAAATATTCAGGCA 53
consensus_9186#2 ------------------------------------------------------------
consensus_9186#0 TTCTACTCCTGAAGAACAGAATTTTTGCCTAGATAGCTACCAGTTGAATCTGGCATGTTC 420
consensus_9186#1 A--ACTTTTGAGGTTTTTCCTGAGGAGCAGCTGAAAATATTTTATGCATGCTATTTATCA 111
consensus_9186#2 ------------------------------------------------------------
consensus_9186#0 ATAATGCTTATAGTCATTCCTGTAGCTTGG-TGATGCTTTTTGCTACATACTAATACCTA 479
consensus_9186#1 ACATTTGCTGGTCCTGTCATGGGAGTCATGTACATTTTTACAGCTAAA--ATTGCATTTT 169
consensus_9186#2 -----------------------------------------------------------T 1
consensus_9186#0 GTAGTTCATAACTTTTGTAGTAGAGCTTGATCCTTTTTTTTTTTTGGATCAAAGGGCAAA 539
consensus_9186#1 GCAGGGACAATCCTTTTT--TTTACA-AAGCTGG-AAATAAAACTGAATGGA----G-TT 220
consensus_9186#2 GCAGCGACCATCCTCTCT--CTTACACAAGCTGGCAAATAAAACTGAATGGA----GCTT 55
consensus_9186#0 ACGAGCTTGATCCAATTTGATGTTTAAATACTTCTAAACGTAGGGGCATCGTCCATATTT 599
* **** * * * * * ** *** * * ** * **
consensus_9186#1 ACTACA--------------------AGGTGGTCATTCCTTTGCACC-AGCTAAGAGCGG 259
consensus_9186#2 ACTACA--------------------AGGTGGTCATTCCTCTGCACCCAGCTAAGAGCGG 95
consensus_9186#0 ATCTCATATGTTCTTTTTGGATAAACAGGTGGTCATTCCTCTGCACC-AGCTAAGAGCGG 658
* ** ************** ****** ************
consensus_9186#1 GTAATCCTTCAGTGAGC-AAAGTAAACCCTGCTGAAAAGTATATTCAGGTTGTTTCAG-T 317
consensus_9186#2 CTAATCCTTCAGTGAGCCAACGTAAACCCTGCTGAAAAGTATATTCAGGTTGTTTCAGCT 155
consensus_9186#0 CTAATCCTTCAGTGAGC-AAAGTAAACCCTGCTGAAAAGTATATTCAGGTTGTTTCAG-T 716
**************** ** ************************************* *
consensus_9186#1 TGAAGGCCACGAGTTTTGGTTCATGGGTTTTTTGATGTATGACAAAGCCGTG-TGTAGCC 376
consensus_9186#2 TGAAGGCCACGAGTTCTGGTTCATGGGTTTTCTGATGTATGACAA-GCCGTGCTGTAGCC 214
consensus_9186#0 TGAAGGCCACGAGTTCTGGTTCATGGGTTTTCTGATGTATGACAAAGCCGTG-TGTAGCC 775
*************** *************** ************* ****** *******
consensus_9186#1 TCCAAGAAGCCATGAATAGTGCCCGCGAGATGCAACCGTAGATACCAAAGCAGAAGTTTC 436
consensus_9186#2 TCCCAGAAGCCATGAATAGTGCCCGCGAGATGCAACCGTAGATACCAAAGCAGAAGTTTC 274
consensus_9186#0 TCCAAGAAGCCATGAATAGTGCCCGCGAGATGCAACCGTAGATACCAAAGCAGAAGTTTC 835
*** ********************************************************
consensus_9186#1 AGTCGAGAGTCATCCTGATCCTGTGTAGCAATCCTGGGGGGGCATTTTTATTTCCGCGAT 496
consensus_9186#2 A-TCGAGAGTCATCCTGATCCTGTGTAGCAATCCTGGGGGGGCATCTCTATTTCCGCGAT 333
consensus_9186#0 AGTCGAGAGTCATCCTGATCCTGTGTAGCAATCCTGGGGGGGCATCTCTATTTCCGCGAT 895
* ******************************************* * ************
consensus_9186#1 CGATTCCTTCGCTTTTGAGTGTTTCCTGTTTCAGATCCTTCGCGGCTGTGTGCTTTGGAG 556
consensus_9186#2 CGATTCCTTCGCTTCTGAGTGTCTCCTGTTTCAGATCCTTCGCGGGTGTGTGCTTCTGAG 393
consensus_9186#0 CGATTCCTTCGCTTCTGAGTGTCTCCTGTTTCAGATCCTTCGCGGCTGTGTGCTTCGGAG 955
************** ******* ********************** ********* ***
consensus_9186#1 CCATTTGAGACGATACACTCACTAGCTTTTATACGTGTTCGAAATGTGTTTTTTTTGTTG 616
consensus_9186#2 CCATTTGAGACGATACACTCACTAGCTTCTATACGTGTTCGAAATGTGTTCTTTTTGTTG 453
consensus_9186#0 CCATTTGAGACGATACACTCACTAGCTTCTATACGTGTTCGAAATGTGTTCTTTTTGTTG 1015
**************************** ********************* *********
consensus_9186#1 TGGCCTTCCGCGTGTTGTAATGATGGGATGTATGGGAAAACACTGGAGCTGTCCATTTTG 676
consensus_9186#2 TGGCCTTCCGCGTGTTGTAATGATGGGATGTATGGGAAAACACTGGAGCTGTCCCTTTTG 513
consensus_9186#0 TGGCCTTCCGCGTGTTGTAATGATGGGATGTATGGGAAAACACTGGAGCTGTCCATTTTG 1075
****************************************************** *****
consensus_9186#1 AATGCTTTTATTATCAACACTTGAAAATGTGGCAGTATCGGATGGATGTTTATGGGAAAA 736
consensus_9186#2 AATGCTTTTATTATCAACACTTGAAAAAGTGGCAGTATCGGATGGATGTTTATGGGAACG 573
consensus_9186#0 AATGCTTTTATTATCAACACTTGAAAATGTG-CAGTAAAAAATGGATGTTTATGGGAAAA 1134
*************************** *** ***** *****************
consensus_9186#1 AAAA------AAAAAAAAAAAAAGGGA--------------------------------- 757
consensus_9186#2 AATCTCTCCCACAGAAAAAAAAAAGAACTATACATGTATATACAGCCCAAGTTTTCGTCA 633
consensus_9186#0 AAAA------AAAAA--------------------------------------------- 1143
** * * *
consensus_9186#1 ---
consensus_9186#2 AAA 636
consensus_9186#0 ---
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||