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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9287#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1480 fasta sequence
[TTTTTTTTTTTATGAGGCATGGCAGATGTGCCATCTATCTGATATTCTACTCATATGACTTTCTCAAACACAGTCATGAACTTATGATACATGTCCATGCGAATGCGTGGATTATCTTTCTAGTTAAATTTGAAAGAGTAAATTATATATAGTCCACTTCTTTTTACTAATGTTACAACTTGGATTAGGGCCAATACAACATTTTCACTTTCAACGAGGAAAGTTTACGAAACATTTCAATTTGAGCCTCCTGTTAGCTTCTTATCCAACCTCCCCTCCGGAGTCTTGACTCTTGTTGTCATGTATCCCTCTCTCGATAGCAAAGGCCATGATATCTTATGATTGCCAATCTTATTTCTTGAGTATTTCTGTTCAACGTCGAGGTATGCATCACTCATGACATGATCGATTCCACGAACATGTCGAAATTGCCATGGGAGCAACCACCCTCCTGAACGCTCTCGTGTGCCACCACCATCATCGCCTCAATCCTCTCTCTCATGCCGGCGTCTCCCATCACCTCCTCCACTCTGCCGGCGAGGTGCTCCTTCGTGACCATGCCCGACTTCTTGTCGGCGACGGCTGGGAGCCCGACACGCCAGATGTCGCAGATGTACGCCCGGTTGACGAACTGGTCGGCGAAGTAGGGCCACGCCACGAACGGCACGCCGTTCCGGACGCCCTCCATGATCGAGTTCCACCCGCAGTGCGACACGAAGCACGCCACCGCCGGGTGAGCCAGCACCCGCTGCTGCGGCGCCCACGCCACGACCTTGCCACGGCCGCCGTCATTGCCGGAGGCGACGACGCGGTCCAGGAAGCCGTCAGGGTACTCGTGCGCGTCGCCATGGACGATGTCTGGGCGCACCACCCACAGGAAAGGCCGGCCGGTGAGCTCGAGCCCCAGGGCGAGCTCCTGGAATTGGCGCCGGTCGAACACGGTGAAGCTGCCGAAGGCGACGTACACGACGGACCGCGCCGGCTGCACGTCGAGCCACGACATGCACGCGCCGTCCTCGGGGCGCCAGAAGTGGCCGACCGGCTTGCCTGGGCGCTCGCCGGTGAGGAGCGGGCCGATGGGGAGGATCTTGGGGAACCGCGCGAACGTGGCCGCCTCCGCGTCGCGGAAGGAGTTGCAGAGGATGTAATCACACTCGTCGACGGCACGGACGCCAGCGAGGACGCAACTGAACAGCAGCTCCTGCCCCTGGTCGTTGCCGATGCAGTTCCACGCCAGGTGCGCCGGTTGCATCATCGGCATGTCCGGCGACAGCTGGAAGGCCTCCTGCGTTAGTGCTGACCCTGCCCAGGAAAAACAAACAAGATGGAAATACCAGTTGGAAGCCTATTAGTTTCTGATTTCAGAATTTGAAATTTGTTTTGTTTGTGAGGAATTTAACATCTTTGATGTCCGGTTAGCATTTTGGATCTTCCACGAAATTTGAGTTGCTTCCCGTACAAAATTTTGGTCCGTGAAACG]
[+] EMBL CA762963 [TTTTTTTTTTTATGAGGCATGGCAGATGTGCCATCTATCTGATATTCTACTCATATGACTTTCTCAAACACAGTCATGAACTTATGATACATGTCCATGCGAATGCGTGGATTATCTTTCTAGTTAAATTTGAAAGAGTAAATTATATATAGTCCACTTCTTTTTACTAATGTTACAACTTGGATTAGGGCCAATACAACATTTTCACTTTCAACGAGGAAAGTTTACGAAACATTTCAATTTGAGCCTCCTGTTAGCTTCTTATCCAACCTCCCCTCCGGAGTCTTGACTCTTGTTGTCATGTATCCCTCTCTCGATAGCAAAGGCCATGATATCTTATGATTGCCAATCTTATTTCTTGAGTATTTCTGTTCAACGTCGAGGTATGCATCACTCATGACATGATCGATTCCACGAACATGTCGAAATTGCCATGGGAGCAACCACCCTCCTGAACGCTCTCGTGTGCCACCACCATCATCGCCTCAATCCTCTCTCTCATGCCGGCGTCTCCCATCACCTCCTCCACTCTGCCGACGAGGTGCTCCTTCGTGACCATGCCCGACTTCTTGTCGGCAACGGCTGGGAGCCCGACACGCCAGATGTCGCAAATGTACGCCCGGTTGACGAACTGGTCGGCGAAGTAGGGCCACGCCACGAACGGCACGCCGTTCCGGACGCCCCCCt ]
[+] EMBL CB621476 [ cTTTTTATTTATGAGGCATGGCAGATGTGCCATCTATCTGATATTCTACTCATATGACTTTCTCAAACACAGTCATGAACTTATGATACATGTCCATGCGAATGCGTGGATTCTCTTTCTAGTTAAATTTGAAAGAGTAAATTATATATAGTCCACTTCTTTTTACTAATGTTACAACTTGGATTAGGGCCAATACAACATTTTCACTTTCAACGAGGAAAGTTTACGAAACATTTCAATTTGAGCCTCCTGTTAGCTTCTTATCCAACCTCCCCTCCGGAGTCTTGACTCTTGTTGTCATGTATCCCTCTCTCGATAGCAAAGGCCATGATATCTTATGATTGCCAATCTTATTTCTTGAGTATTTCTGTTCAACGTCGAGGTATGCATCACTCATGACATGATCGATTCCACGAACATGTCGAAATTGCCATGGGAGCAACCACCCTCCTGAACGCTCTCGTGTGCCACCACCAT A TCAATCCTCTCTCTCATGCCGGCGTCTCCCATCACCTCCTCCACTCTGCCGGCGAGGTGCTCCTTCGTGACCATGCCCGACTTCTTGTCGGCGACGGCTGGGAGCCCGACACGCCAGATGTCGCAGATGTACGCCCGGTTGACGAACTGGTCGGCGAAGTAGGGCCACGCCACGAACGGCACGCCGTTCCGGACGCCCTCCATGATCGAGTTCCACCCGCAGTGCGACACGAAGCACGCCACCGCCGGGTGAGCCAGCACCCGCTGCTGCGGCGCCCACGCCACGACCTTGCCACGGCCGC ]
[+] EMBL CB620857 [ CATGGCAGATGTGCCATCTATCTGATCTTCTACTCATATGACTTTCTCAAACACAGTCATGAACTTATGATACATGTCCATGCGAATGCGTGGATTATCTTTCTAGTTAAATTTGAAAGAGTAAATTATATATAGTCCACTTCTTTTTACTAATGTTACAACTTGGATTAGGGCCAATACAACATTTTCACTTTCAACGAGGAAAGTTTACGAAACATTTCAATTTGAGCCTCCTGTTAGCTTCTTATCCAACCTCCCCTCCGGAGTCTTGACTCTTGTTGTCATGTATCCCTCTCTCGATAGCAAAGGCCATGATATCTTATGATTGCCAATCTTATTTCTTGAGTATTTCTGTTCAACGTCGAGGTATGCATCACTCATGACATGATCGATTCCACGAACATGTCGAAATTGCCATGGGAGCAACCACCCTCCTGAACGCTCTCGTGTGCCACCACCAT A TCAATCCTCTCTCTCATGCCGGCGTCTCCCATCACCTCCTCCACTCTGCCGGCGAGGTGCTCCTTCGTGACCATGCCCGACTTCTTGTCGGCGACGGCTGGGAGCCCGACACGCCAGATGTCGCAGATGTACGCCCGGTTGACGAACTGGTCGGCGAAGTAGGGCCACGCCACGAACGGCACGCCGTTCCGGACGCCCTCCATGATCGAGTTCCACCCGCAGTGCGACACGAAGCACGCCACCGCCGGGTGAGCCAGCACCCGCTGCTGCGGCGCCCAC ]
[+] EMBL AK060146 [ TCATGACATGATCGATTCCACGAACATGTCGAAATTGCCATGGGAGCAACCACCCTCCTGAACGCTCTCGTGTGCCACCACCATCATCGCCTCAATCCTCTCTCTCATGCTGGCGTCTCCCATCACCTCCTCCACTCTGCCGGCGAGGTGCTCCTTCGTGACCATGCCCGACTTCTTGTCGGCGACGGCTGGGAGCCCGACACGCCAGATGTCGCAGATGTACGCCCGGTTGACGAACTGGTCGGCGAAGTAGGGCCACGCCACGAACGGCACGCCGTTCCGGACGCCCTCCATGATCGAGTTCCACCCGCAGTGCGATACGAAGCACGCCACCGCCGGGTGAGCCAGCACCCGCTGCTGCGGCGCCCACGCCACGACCTTGCCACGGCCGCCGTCATTGCCGGAGGCGACGACGCGGTCCAGGAAGCCGTCAGGGTACTCGTGCGCGTCGCCATGGACGATGTCTGGGCGCACCACCCACAGGAAAGGCCGGCCGGTGAGCTCGAGCCCCAGGGCGAGCTCCTGGAATTGGCGCCGGTCGAACACGGTGAAGCTGCCGAAGGCGACGTACACGACGGACCGCGCCGGCTGCACGTCGAGCCACGACATGCACGCGCCGTCCTCGGGGCGCCAGAAGTGGCCGACCGGCTTGCCTGGGCGCTCGCCGGTGAGGAGCGGGCCGATGGGGAGGATCTTGGGGAACCGCGCGAACGTGGCCGCCTCCGCGTCGCGGAAGGAGTTGCAGAGGATGTAATCACACTCGTCGACGGCACGGACGCCAGCGAGGACGCAACTGAACAGCAGCTCCTGCCCCTGGTCGTTGCCGATGCAGTTCCACGCCAGGTGCGCCGGTTGCATCATCGGCATGTCCGGCGACAGCTGGAAGGCCTCCTGCGTTAGTGCTGACCCTGCCCAGGAAAAACAAACAAGATGGAAATACCAGTTGGAAGCCTATTAGTTTCTGATTTCAGAATTTGAAATTTGTTTTGTTTGTGAGGAATTTAACATCTTTGATGTCCGGTTAGCATTTTGGATCTTCCACGAAATTTGAGTTGCTTCCCGTACAAAATTTTGGTCCGTGAAACG]
consensusID : consensus_9287#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 800 fasta sequence
[AGTGCGACACGAAGCACGCCACCGCCGGGTGAGCCAGCACCCGCTGCTGCGGCGCCCACGCCACGACCTTGCCACGGCCGCCGCCATTGCCGGAGGCGACGACGCGGTCCAGGAAGCCGTCAGGGTACTCGTGCACGTCGCCATGGACGATGTCTGGGCGCACCACCCACAGGAAAGGCCGGCCGGTGAGCTCGAGCCCCAGGGCGAGCTCCTGGAATTGGCGCCGGTCGAACACGGTGAAGCTGCCGAAGGCGACGTACACGACGGACCGCGCCGGCTGCACGTCGAGCCACGACATACACGCGCCGTCCTCGGGGCGCCAGAAGTGGCCGACCGGCTTGCCTGGGCGCTCGCCGGTGAGGAGCGGGCCGATGGGGAGGATCTTGGGGAACCGCGAGAACGTGGCCGCCTCCGCGTCGCGGAAGGAGTTGCAGAGGATGTAGTCACACTCGTCGACGGCACGGACGCCGGCGAGGACGCAACTGAACAGCAGCTCCTGCCCCTGGTCGTTGCCGATGCAGTTCCACGCCAGGTGCGCCGGTTGCATCATCGGCATGTCCGGCGACAGCATGAGCGTCGATTATTTTGTCCCGAATGAGTTCCGGAACGCTGAGTAGAGACGCCATGACGGCGGCCGACGCCGGCCTGACGGCAGCGGACTTCACGCCGGTGCGCCTCGCCACGTCCAGCGCCCACGTCCCGACATCGTAATCCGCCACCACGCACCTGATCCTCCCCCAGCCGTCGCCGTCGCCGTCCACCGCCGCCTCTTCCTCGCCGCTCCGCCGGATGAGAAGCTC]
[-] EMBL CB620856 [AGTGCGACACGAAGCACGCCACCGCCGGGTGAGCCAGCACCCGCTGCTGCGGCGCCCACGCCACGACCTTGCCACGGCCGCCGCCATTGCCGGAGGCGACGACGCGGTCCAGGAAGCCGTCAGGGTACTCGTGCACGTCGCCATGGACGATGTCTGGGCGCACCACCCACAGGAAAGGCCGGCCGGTGAGCTCGAGCCCCAGGGCGAGCTCCTGGAATTGGCGCCGGTCGAACACGGTGAAGCTGCCGAAGGCGACGTACACGACGGACCGCGCCGGCTGCACGTCGAGCCACGACATACACGCGCCGTCCTCGGGGCGCCAGAAGTGGCCGACCGGCTTGCCTGGGCGCTCGCCGGTGAGGAGCGGGCCGATGGGGAGGATCTTGGGGAACCGCGAGAACGTGGCCGCCTCCGCGTCGCGGAAGGAGTTGCAGAGGATGTAGTCACACTCGTCGACGGCACGGACGCCGGCGAGGACGCAACTGAACAGCAGCTCCTGCCCCTGGTCGTTGCCGATGCAGTTCCACGCCAGGTGCGCCGGTTGCATCATCGGCATGTCCGGCGACAGCATGAGCGTCGATTATTTTGTCCCGAATGAGTTCCGGAACGCTGAGTAGAGACGCCATGACGGCGGCCGACGCCGGCCTGACGGCAGCGGACTTCACGCCGGTGCGCCTCGCCACGTCCAGCGCCCACGTCCCGACATCGTAATCCGCCACCACGCACCTGATCCTCCCCCAGCCGTCGCCGTCGCCGTCCACCGCCGCCTCTTCCTCGCCGCTCCGCCGGATGAGAAGCTC]
[-] EMBL CB621475 [ CCATGNCCGGAGGCGACGACGCGGTCCAGGAAGCCGTCAGGGTACTCGTGCACGTCGCCATGGACGATGTCTGGGCGCACCACCCACAGGAAAGGCCGGCCGGTGAGCTCGAGCCCCAGGGCGAGCTCCTGGAATTGGCGCCGGTCGAACACGGTGAAGCTGCCGAAGGCGACGTACACGACGGACCGCGCCGGCTGCACGTCGAGCCACGACATACACGCGCCGTCCTCGGGGCGCCAGAAGTGGCCGACCGGCTTGCCTGGGCGCTCGCCGGTGAGGAGCGGGCCGATGGGGAGGATCTTGGGGAACCGCGAGAACGTGGCCGCCTCCGCGTCGCGGAAGGAGTTGCAGAGGATGTAGTCACACTCGTCGACGGCACGGACGCCGGCGAGGACGCAACTGAACAGCAGCTCCTGCCCCTGGTCGTTGCCGATGCAGTTCCACGCCAGGTGCGCCGGTTGCATCATCGGCATGTCCGGCGACAGCATGAGCGTCGATTATTTTGTCCCGAATGAGTTCCGGAACGCTGAGTAGAGACGCCATGACGGCGGCCGACGCCGGCCTGACGGCAGCGGACTTCACGCCGGTGCGCCTCGCCACGTCCAGCGCCCACGTCCCGACATCGTAATCCGCCACCACGCACCTGATCCTCCCCCAGCCGTCGCCGTCGCCGTCCACCGCCGCCTCTTCCTCGCCGCTCCGCCGGATGAGctcctc]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9287#0 TTTTTTTTTTTATGAGGCATGGCAGATGTGCCATCTATCTGATATTCTACTCATATGACT 60
consensus_9287#1 ------------------------------------------------------------
consensus_9287#0 TTCTCAAACACAGTCATGAACTTATGATACATGTCCATGCGAATGCGTGGATTATCTTTC 120
consensus_9287#1 ------------------------------------------------------------
consensus_9287#0 TAGTTAAATTTGAAAGAGTAAATTATATATAGTCCACTTCTTTTTACTAATGTTACAACT 180
consensus_9287#1 ------------------------------------------------------------
consensus_9287#0 TGGATTAGGGCCAATACAACATTTTCACTTTCAACGAGGAAAGTTTACGAAACATTTCAA 240
consensus_9287#1 ------------------------------------------------------------
consensus_9287#0 TTTGAGCCTCCTGTTAGCTTCTTATCCAACCTCCCCTCCGGAGTCTTGACTCTTGTTGTC 300
consensus_9287#1 ------------------------------------------------------------
consensus_9287#0 ATGTATCCCTCTCTCGATAGCAAAGGCCATGATATCTTATGATTGCCAATCTTATTTCTT 360
consensus_9287#1 ------------------------------------------------------------
consensus_9287#0 GAGTATTTCTGTTCAACGTCGAGGTATGCATCACTCATGACATGATCGATTCCACGAACA 420
consensus_9287#1 ------------------------------------------------------------
consensus_9287#0 TGTCGAAATTGCCATGGGAGCAACCACCCTCCTGAACGCTCTCGTGTGCCACCACCATCA 480
consensus_9287#1 ------------------------------------------------------------
consensus_9287#0 TCGCCTCAATCCTCTCTCTCATGCCGGCGTCTCCCATCACCTCCTCCACTCTGCCGGCGA 540
consensus_9287#1 ------------------------------------------------------------
consensus_9287#0 GGTGCTCCTTCGTGACCATGCCCGACTTCTTGTCGGCGACGGCTGGGAGCCCGACACGCC 600
consensus_9287#1 ------------------------------------------------------------
consensus_9287#0 AGATGTCGCAGATGTACGCCCGGTTGACGAACTGGTCGGCGAAGTAGGGCCACGCCACGA 660
consensus_9287#1 ------------------------------------------------------------
consensus_9287#0 ACGGCACGCCGTTCCGGACGCCCTCCATGATCGAGTTCCACCCGCAGTGCGACACGAAGC 720
consensus_9287#1 ---------------------------------------------AGTGCGACACGAAGC 15
***************
consensus_9287#0 ACGCCACCGCCGGGTGAGCCAGCACCCGCTGCTGCGGCGCCCACGCCACGACCTTGCCAC 780
consensus_9287#1 ACGCCACCGCCGGGTGAGCCAGCACCCGCTGCTGCGGCGCCCACGCCACGACCTTGCCAC 75
************************************************************
consensus_9287#0 GGCCGCCGTCATTGCCGGAGGCGACGACGCGGTCCAGGAAGCCGTCAGGGTACTCGTGCG 840
consensus_9287#1 GGCCGCCGCCATTGCCGGAGGCGACGACGCGGTCCAGGAAGCCGTCAGGGTACTCGTGCA 135
******** **************************************************
consensus_9287#0 CGTCGCCATGGACGATGTCTGGGCGCACCACCCACAGGAAAGGCCGGCCGGTGAGCTCGA 900
consensus_9287#1 CGTCGCCATGGACGATGTCTGGGCGCACCACCCACAGGAAAGGCCGGCCGGTGAGCTCGA 195
************************************************************
consensus_9287#0 GCCCCAGGGCGAGCTCCTGGAATTGGCGCCGGTCGAACACGGTGAAGCTGCCGAAGGCGA 960
consensus_9287#1 GCCCCAGGGCGAGCTCCTGGAATTGGCGCCGGTCGAACACGGTGAAGCTGCCGAAGGCGA 255
************************************************************
consensus_9287#0 CGTACACGACGGACCGCGCCGGCTGCACGTCGAGCCACGACATGCACGCGCCGTCCTCGG 1020
consensus_9287#1 CGTACACGACGGACCGCGCCGGCTGCACGTCGAGCCACGACATACACGCGCCGTCCTCGG 315
******************************************* ****************
consensus_9287#0 GGCGCCAGAAGTGGCCGACCGGCTTGCCTGGGCGCTCGCCGGTGAGGAGCGGGCCGATGG 1080
consensus_9287#1 GGCGCCAGAAGTGGCCGACCGGCTTGCCTGGGCGCTCGCCGGTGAGGAGCGGGCCGATGG 375
************************************************************
consensus_9287#0 GGAGGATCTTGGGGAACCGCGCGAACGTGGCCGCCTCCGCGTCGCGGAAGGAGTTGCAGA 1140
consensus_9287#1 GGAGGATCTTGGGGAACCGCGAGAACGTGGCCGCCTCCGCGTCGCGGAAGGAGTTGCAGA 435
********************* **************************************
consensus_9287#0 GGATGTAATCACACTCGTCGACGGCACGGACGCCAGCGAGGACGCAACTGAACAGCAGCT 1200
consensus_9287#1 GGATGTAGTCACACTCGTCGACGGCACGGACGCCGGCGAGGACGCAACTGAACAGCAGCT 495
******* ************************** *************************
consensus_9287#0 CCTGCCCCTGGTCGTTGCCGATGCAGTTCCACGCCAGGTGCGCCGGTTGCATCATCGGCA 1260
consensus_9287#1 CCTGCCCCTGGTCGTTGCCGATGCAGTTCCACGCCAGGTGCGCCGGTTGCATCATCGGCA 555
************************************************************
consensus_9287#0 TGTCCGGCGACAGCTGGAAGGCCTCCTGCGTTAGTGCTGACCCTGCCCAGGAAAAACAAA 1320
consensus_9287#1 TGTCCGGCGACAGCATGAGCGTCGATTATTTT-GTCCCGAATGAGTTCCGGAACGCTGAG 614
************** ** * * * ** ** * ** * * **** *
consensus_9287#0 CAAG------ATGGAAATACCAGTTGGAAGCCTATTAGTTTCTGATTTCAGAATT-TGAA 1373
consensus_9287#1 TAGAGACGCCATGACGGCGGCCGACGCCGGCCTGACGGCAGCGGACTTCACGCCGGTGCG 674
* *** * * * **** * * ** **** **
consensus_9287#0 ATTTGTTTTGTTTGTGAGGAATTTAACATCTTTGATGTCCGGT-TAGCATTTTGGATCTT 1432
consensus_9287#1 CCTCGCCACGTCCAGCGCCCACGTCCCGACATCGTAATCCGCCACCACGCACCTGATCCT 734
* * ** * * * * * * **** * **** *
consensus_9287#0 CCACGAAATTTGA--GTTGCTTCCCGT-ACAAAATTTTGGTCCGTGAAACG--------- 1480
consensus_9287#1 CCCCCAGCCGTCGCCGTCGCCGTCCACCGCCGCCTCTTCCTCGCCGCTCCGCCGGATGAG 794
** * * * ** ** ** * * ** ** * **
consensus_9287#0 ------
consensus_9287#1 AAGCTC 800
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||