These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9340#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1239 fasta sequence [CGCGAGCACACCACTGACCTCTGCGGCGGCGGCGAGGAGAGGAGAGGGGAGAAGCCGAGGAGGAGGCAGCGGGGAGAGAGGATGCCGCGGCCGGAGGTGCAGGCGCCGCCGGAGATATTCTACAACGAGTCGGAGGCCCGCAAGTACACCACCTCCTCTCGCATCATCGAAATCCAGTCGAGGATTACCGAGAGGGCGCTCGAGTTGCTTGCGCTACCCAACGATGGCGTCCCCAAGTTGCTTCTCGACATCGGGTGCGGTTCTGGACTTAGTGGCGAGACATTGACAGAGCAGGGCCATCACTGGATTGGTTATGATATTTCGAAGTCCATGCTTGATGTTGCTCTGGAGCGTGAAGCGGAGGGTGATCTCCTTCTTGCAGATATGGGCCAGGGTTTAGGCTTGCGGCCTGGAGTTATTGATGGAGCAATCAGTATTTCAGCAGTTCAGTGGTTATGCAATGCTGACAAGTCTTGTCACAACCCAAGATTGCGGTTAAAGGCTTTCTTTGGATCATTATATAGATGCCTAGCAAGGGGAGCAAGAGCCGTTTTGCAATTTTATGCTGATAATGTGAAGCAGAGTGAAATGATCGTGACTGCTGCCATGCGTGCTGGATTTGCAGGTGGAGTGGTTGTTGACTGGCCTCACAGTTCAAAAGCAAAGAAATCCTACCTTGTCCTCACTTGTGGACCACCTTCTCTAAATTCATCGCTTCCGAAGGGTAAAGGTCAAGATGGTGCCATGTGTAGTGATGATGATGAGAGCGATGATGGAAGTGGTGATG-AAGATGGAGCCCAAACAGTCGGCATATATGAAAGAAATAGGCCAAAGAAGAGGCAGAAGACGAAGAAGAACGGCAAGGGCAAGGCTTGGCTCTTGAACAAAAAGGAGCAGCTGAGAAGGCGAGGACGGG-AGGTGCCCGCGGACACCAAATACACAGGGCGGAAGCGGAAAAGCTA-CTTCTAGTTTCAAATGATTCTT-GGAATGCCTGTGCACCATTTT-GCCGTTTGTCATACTAGTAGCTCATTATTAGTAGTACGAGAAAGGTTCAGTTGAAGAGTTGGGTGAATGCGCTCTCTCTCTCTACACCATAGAGCCGTTCATGTTCTGTAACCTTCTAGCAATTCTGAGTTTTGACAAATGCTGTGCAAATCTATGTCCTACTTTTGAAGGATCCAGTATTGTATGTTTGTTGCTTAAAATTTTACATGGGTTTTGGCAAAAAAAAAATGCACG] [+] EMBL AK067584 [CGCGAGCACACCACTGACCTCTGCGGCGGCGGCGAGGAGAGGAGAGGGGAGAAGCCGAGGAGGAGGCAGCGGGGAGAGAGGATGCCGCGGCCGGAGGTGCAGGCGCCGCCGGAGATATTCTACAACGAGTCGGAGGCCCGCAAGTACACCACCTCCTCTCGCATCATCGAAATCCAGTCGAGGATTACCGAGAGGGCGCTCGAGTTGCTTGCGCTACCCAACGATGGCGTCCCCAAGTTGCTTCTCGACATCGGGTGCGGTTCTGGACTTAGTGGCGAGACATTGACAGAGCAGGGCCATCACTGGATTGGTTATGATATTTCGAAGTCCATGCTTGATGTTGCTCTGGAGCGTGAAGCGGAGGGTGATCTCCTTCTTGCAGATATGGGCCAGGGTTTAGGCTTGCGGCCTGGAGTTATTGATGGAGCAATCAGTATTTCAGCAGTTCAGTGGTTATGCAATGCTGACAAGTCTTGTCACAACCCAAGATTGCGGTTAAAGGCTTTCTTTGGATCATTATATAGATGCCTAGCAAGGGGAGCAAGAGCCGTTTTGCAATTTTATGCTGATAATGTGAAGCAGAGTGAAATGATCGTGACTGCTGCCATGCGTGCTGGATTTGCAGGTGGAGTGGTTGTTGACTGGCCTCACAGTTCAAAAGCAAAGAAATCCTACCTTGTCCTCACTTGTGGACCACCTTCTCTAAATTCATCGCTTCCGAAGGGTAAAGGTCAAGATGGTGCCATGTGTAGTGATGATGATGAGAGCGATGATGGAAGTGGTGATG AAGATGAAGCCCAAACAGTCGGCATATATGAAAGAAATAGGCCAAAGAAGAGGCAGAAGACGAAGAAGAACGGCAAGGGCAAGGCTTGGCTCTTGAACAAAAAGGAGCAGCTGAGAAGGCGAGGACGGG AGGTGCCCGCGGACACCAAATACACAGGGCGGAAGCGGAAAAGCTA CTTCTAGTTTCAAATGATTCTT GGAATGCCTGTGCACCATTTT GCCGTTTGTCATACTAGTAGCTCATTATTAGTAGTACGAGAAAGGTTCAGTTGAAGAGTTGGGTGAATGCGCTCTCTCTCTCTACACCATAGAGCCGTTCATGTTCTGTAACCTTCTAGCAATTCTGAGTTTTGACAAATGCTGTGCAAATCTATGTCCTACTTTTGAAGGATCCAGTATTGTATGTTTGTTGCTTAAAATTTTACATGGGTTTTGGCAAAAAAAAAATGCACG] [+] EMBL AU029510 [ TCTGCGGCGGCGGCGAGGAGAGGAGAGGGGAGAAGCCGAGGAGGAGGCAGCGGGGAGAGAGGATGCCGCGGCCGGA GTGCAGGCGCCGCCGGAGATATTCTACAACGAGTCGGAGGCCCGCAAGTACACCACCTCCTCTCGCATCATCGAAATCCAGTCGAGGATTACCGAGAGGGCGCTCGAGTTGCTTGCGCTACCCAACGATGGCGTCCCCAAGTTGCTTCTCGACATCGGGTGCGGTTCTGGACTTAGTGGCGAGACATTGACAGAGCAGGGCCATCACTGGATTGGTTATGATATTTCGAAGTCCATGCTTGATGTTGCTCTGGAGCGTGAAGC GAGGGTGATCTCCTTCTTGCAGATATGGGCCAGGGTTTAGGCTTGCGGCCTGGAGT ] [+] EMBL AK060165 [ CAACGAGTCGGAGGCCCGCAAGTACACCACCTCCTCTCGCATCATCGAAATCCAGTCGAGGATTACCGAGAGGGCGCTCGAGTTGCTTGCGCTACCCAACGATGGCGTCCCCAAGTTGCTTCTCGACATCGGGTGCGGTTCTGGACTTAGTGGCGAGACATTGACAGAGCAGGGCCATCACTGGATTGGTTATGATATTTCGAAGTCCATGCTTGATGTTGCTCTGGAGCGTGAAGCGGAGGGTGATCTCCTTCTTGCAGATATGGGCCAGGGTTTAGGCTTGCGGCCTGGAGTTATTGATGGAGCAATCAGTATTTCAGCAGTTCAGTGGTTATGCAATGCTGACAAGTCTTGTCACAACCCAAGATTGCGGTTAAAGGCTTTCTTTGGATCATTATATAGATGCCTAGCAAGGGGAGCAAGAGCCGTTTTGCAATTTTATGCTGATAATGTGAAGCAGAGTGAAATGATCGTGACTGCTGCCATGCGTGCTGGATTTGCAGGTGGAGTGGTTGTTGACTGGCCTCACAGTTCAAAAGCAAAGAAATCCTACCTTGTCCTCACTTGTGGACCACCTTCTCTAAATTCATCGCTTCCGAAGGGTAAAGGTCAAGATGGTGCCATGTGTAGTGATGATGATGAGAGCGATGATGGAAGTGGTGATG AAGATGGAGCCCAAACAGTCGGCATATATGAAAGAAATAGGCCAAAGAAGAGGCAGAAGACGAAGAAGAACGGCAAGGGCAAGGCTTGGCTCTTGAACAAAAAGGAGCAGCTGAGAAGGCGAGGACGGG AGGTGCCCGCGGACACCAAATACACAGGGCGGAAGCGGAAAAGCTA CTTCTAGTTTCAAATGATTCTT GGAATGCCTGTGCACCATTTT GCCGTTTGTCATACTAGTAGCTCATTATTAGTAGTACGAGAAAGGTTCAGTTGAAGAGTTGGGTGAATGCGCTCTCTCTCTCTACACCATAGAGCCGTTCATGTTCTGTAACCTTCTAGCAATTCTGAGTTTTGACAAATGCTGTGCAAATCTATGTCCTACTTTTGAAGGATCCAGTATTGTATG ] [+] EMBL CA767314 [ CAAGTTGCTTCTCGACATCGGGTGTGGTTCTGGACTTAGTGGCGAGACATTGACAGAGCAGGGCCNTCACTGGATTGGTTATGATATTTCGAAGTCCATGCTTGATGTTGCTCTGGAGCGTGAAGCGGAGGGTGATCTCCTTCTTGCAGATATGGGCCAGGGTTTAGGCTTGCGGCCTGGAGTTATTGATGGCGCAATCAGTATTTCAGCAGTTCAGTGGTTATGCAATGCTGACAAGTCTTGTCACAGCCCAAGATTGCGGTTAAAGGCTTTCTTTGGATCATTATATAGATGCCTAGCAAGGGGAGCAAGAGCCGTTTTGCAATTTTATGCTGATAATGTGAAGCAGAGTGAAATGATCGTGACTGCTGCCATGCGTGCTGGATTTGCAGGTGGAGTGGTTGTTGACTGGCCTCACAGTTCAAAAGCAAAGAAATCCTACCTTGTCCTCACTTGTGGACCACCTTCTCTAAATTCATCGCTTCCGAAGGGTAAAGGTCAAGATGGTGCCATGTGTAGTGATGATGATGAGAGCGATGATGGAAGTGGTGATGNAAGATGGAGCCCAAACAGTCGGCATATATGAAAGAAATAGGCCAAAGAAGAGGCAGAAGACGAAGAAGAACGGCAAGGGCAAGGCTTGGCTCTTGAACAAAAAGGAGCAGCTGANAA GCGANGACGGGAAGGGNCCCGCGGACACCAAATACACAGGGCGGGAGCGGAAAAGCTACCTTCTAGNTTCAAAAGATTCTTNGGAANGCCTGNGCACATTTTTGGCCGGTTGGCATACTAGNAGCTCATTATT ] consensusID : consensus_9340#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 794 fasta sequence [TGCTCAAACGATGTGTTGATTTGATTAAAAAAAGTTGTTTTTTGTACAATTACTTTGCTTCGTTTGTACTATGTTTTGAATTGCAGGGTGTGGTTCTGGACTTAGTGGCGAGACAGTTGACAGAGCAGGGCCATCACTGGATTGGTTATGATATTTCGAAGTCCATGCTTGATGTTGCTCTGGAGCGTGAAGCGGAGGGTGATCTCCTTCTTGCAGATATGGGCCAGGGTTTAGGCTTGCGGCCTGGAGTTATTGATGGCGCAATCAGTATTTCAGCAGTTCAGTGGTTATGCAATGCTGACAAGTCTTGTCACAACCCAAGATTGCGGTTAAAGGCTTTCTTTGGATCATTATATAGATGCCTAGCAAGGGGAGCAAGAGCCGTTTTGCAATTTTATGCTGATAATGTGAAGCAGAGTGAAATGATCGTGACTGCTGCCATGCGTGCTGGATTTGCAGGTGGAGTGGTTGTTGACTGGCCTCACAGTTCANAAGCAAAGAAATCCTACCTTGTCCTCACTTGTGGACCACCTTCTCTAAATTCATCGCTTCCGAAGGGTAAAGGTCAAGATGGTGCCATGTGTAGTGATGATGATGAGAGCGATGATGGAAGTGGTGATGAAGATGGAGCCCAAACAGTCGGCATATATGAAAGAAATAGGCCAAAGAAGAGGCAGAAGACGAAGAAGAACGGCAAGGGGCAGGCTTGGCTCTTTGACAAAAAGGAGCACCTGAAAAGGCGAGGACCGGAGGTGCCCGCGGACCCAAATCCACAGGCCGGAGCCGAAAGCTAC] [+] EMBL BE040378 [TGCTCAAACGATGTGTTGATTTGATTAAAAAAAGTTGTTTTTTGTACAATTACTTTGCTTCGTTTGTACTATGTTTTGAATTGCAGGGTGTGGTTCTGGACTTAGTGGCGAGACAGTTGACAGAGCAGGGCCATCACTGGATTGGTTATGATATTTCGAAGTCCATGCTTGATGTTGCTCTGGAGCGTGAAGCGGAGGGTGATCTCCTTCTTGCAGATATGGGCCAGGGTTTAGGCTTGCGGCCTGGAGTTATTGATGGCGCAATCAGTATTTCAGCAGTTCAGTGGTTATGCAATGCTGACAAGTCTTGTCACAACCCAAGATTGCGGTTAAAGGCTTTCTTTGGATCATTATATAGATGCCTAGCAAGGGGAGCAAGAGCCGTTTTGCAATTTTATGCTGATAATGTGAAGCAGAGTGAAATGATCGTGACTGCTGCCATGCGTGCTGGATTTGCAGGTGGAGTGGTTGTTGACTGGCCTCACAGTTCANAAGCAAAGAAATCCTACCTTGTCCTCACTTGTGGACCACCTTCTCTAAATTCATCGCTTCCGAAGGGTAAAGGTCAAGATGGTGCCATGTGTAGTGATGATGATGAGAGCGATGATGGAAGTGGTGATGAAGATGGAGCCCAAACAGTCGGCATATATGAAAGAAATAGGCCAAAGAAGAGGCAGAAGACGAAGAAGAACGGCAAGGGGCAGGCTTGGCTCTTTGACAAAAAGGAGCACCTGAAAAGGCGAGGACCGGAGGTGCCCGCGGACCCAAATCCACAGGCCGGAGCCGAAAGCTAC] consensusID : consensus_9340#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence [AAAAGCTACTTTTAGTTTCAAATGATTCTTGGAATGCCTGTGCACCATTTTGCCGTTTGTCATACTAGTAGCTCATTATTAGTAGTACGAGAAAGGTTCAGTTGAAGAGTTGGGTGAATGCGCTCTCTCTCTTTACACCAAAGAGCCGCTCATGTTCTGTAACCTTCTAGCAATTTTGAGTTTTGACAAATGCTGTGCAAATCTATGTCCTACTTTTGAAGAAAAAAAAAAAAAAA] [-] EMBL CA763620 [AAAAGCTACTTTTAGTTTCAAATGATTCTTGGAATGCCTGTGCACCATTTTGCCGTTTGTCATACTAGTAGCTCATTATTAGTAGTACGAGAAAGGTTCAGTTGAAGAGTTGGGTGAATGCGCTCTCTCTCTTTACACCAAAGAGCCGCTCATGTTCTGTAACCTTCTAGCAATTTTGAGTTTTGACAAATGCTGTGCAAATCTATGTCCTACTTTTGAAGAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9340#0 CGCGAGCACACCACTGACCTCTGCGGCGGCGGCGAGGAGAGGAGAGGGGAGAAGCCGAGG 60 consensus_9340#2 ------------------------------------------------------------ consensus_9340#1 ------------------------------------------------------------ consensus_9340#0 AGGAGGCAGCGGGGAGAGAGGATGCCGCGGCCGGAGGTGCAGGCGCCGCCGGAGATATTC 120 consensus_9340#2 ------------------------------------------------------------ consensus_9340#1 ------------------------------------------------------------ consensus_9340#0 TACAACGAGTCGGAGGCCCGCAAGTACACCACCTCCTCTCGCATCATCGAAATCCAGTCG 180 consensus_9340#2 ------------------------------------------------------------ consensus_9340#1 ------------------------------------------------------------ consensus_9340#0 AGGATTACCGAGAGGGCGCTCGAGTTGCTTGCGCTACCCAACGATGGCGTCCCCAAGTTG 240 consensus_9340#2 ------------------------------------------------------------ consensus_9340#1 ------------------------------------------------------------ consensus_9340#0 CTTCTCGACATCGGGTGCGGTTCTGGACTTAGTGGCGAGACATTGACAGAGCAGGGCCAT 300 consensus_9340#2 ------------------------------------------------------------ consensus_9340#1 ------------------------------------------------------------ consensus_9340#0 CACTGGATTGGTTATGATATTTCGAAGTCCATGCTTGATGTTGCTCTGGAGCGTGAAGCG 360 consensus_9340#2 ------------------------------------------------------------ consensus_9340#1 ------------------------------------------------------------ consensus_9340#0 GAGGGTGATCTCCTTCTTGCAGATATGGGCCAGGGTTTAGGCTTGCGGCCTGGAGTTATT 420 consensus_9340#2 ------------------------------------------------------------ consensus_9340#1 ------------------------------------------------------------ consensus_9340#0 GATGGAGCAATCAGTATTTCAGCAGTTCAGTGGTTATGCAATGCTGACAAGTCTTGTCAC 480 consensus_9340#2 ------------------------------------------------------------ consensus_9340#1 ------------------------------------------------------------ consensus_9340#0 AACCCAAGATTGCGGTTAAAGGCTTTCTTTGGATCATTATATAGATGCCTAGCAAGGGGA 540 consensus_9340#2 ------------------------------------------------------------ consensus_9340#1 ------------------------------------------------------------ consensus_9340#0 GCAAGAGCCGTTTTGCAATTTTATGCTGATAATGTGAAGCAGAGTGAAATGATCGTGACT 600 consensus_9340#2 ------------------------------------------------------------ consensus_9340#1 ------------------------------------------------------------ consensus_9340#0 GCTGCCATGCGTGCTGGATTTGCAGGTGGAGTGGTTGTTGACTGGCCTCACAGTTCAAAA 660 consensus_9340#2 ------------------------------------------------------------ consensus_9340#1 ------------------------------------------------------------ consensus_9340#0 GCAAAGAAATCCTACCTTGTCCTCACTTGTGGACCACCTTCTCTAAATTCATCGCTTCCG 720 consensus_9340#2 ------------------------------------------------------------ consensus_9340#1 ------------------------------------------------------------ consensus_9340#0 AAGGGTAAAGGTCAAGATGGTGCCATGTGTAGTGATGATGATGAGAGCGATGATGGAAGT 780 consensus_9340#2 ------------------------------------------------------------ consensus_9340#1 ------------------------------------------------------------ consensus_9340#0 GGTGATGAAGATGGAGCCCAAACAGTCGGCATATATGAAAGAAATAGGCCAAAGAAGAGG 840 consensus_9340#2 ------------------------------------------------------------ consensus_9340#1 -----TGCTCAAACGATGTGTTGATTTGATTAAAAAAAGTTGTTTTTTGTACAATTACTT 55 consensus_9340#0 CAGAAGACGAAGAAGAACGGCAAGGGCAAGGCTTGGCTCTTGAACAAAAAGGAGCAGCTG 900 consensus_9340#2 ------------------------------------------------------------ consensus_9340#1 TGCTTCGTTTGTACTATGTTTTGAATTGCAGGGTGTGGTTCTGGACTTAGTGGCGAGACA 115 consensus_9340#0 AGAAGGCGAGGACGGGAGGTGCCCGCGGACACCAAATACACAGGGCGGAAGCGGAAAAGC 960 consensus_9340#2 ------------------------------------------------------AAAAGC 6 consensus_9340#1 GTTGACAGAGCAGGGCCATCACTGGATTGGTTATGATATTTCGAAGTCCATGCTTGATGT 175 * * consensus_9340#0 TACTTCT-AGTTTCAAATGATTCTTGGAATGCCTGT-GCACCATTTTGCCGTTTGTCATA 1018 consensus_9340#2 TACTTTT-AGTTTCAAATGATTCTTGGAATGCCTGT-GCACCATTTTGCCGTTTGTCATA 64 consensus_9340#1 TGCTCTGGAGCGTGAAGCGGAGGGTGATCTCCTTCTTGCAGATATGGGCCAGGGTTTAGG 235 * ** ** * ** * ** * * * * *** * *** * * consensus_9340#0 CTAGTAGCTCA---TTATTAGTAGTACGAGAAAGGTT----CAGTTGAAGAGTTGGGTGA 1071 consensus_9340#2 CTAGTAGCTCA---TTATTAGTAGTACGAGAAAGGTT----CAGTTGAAGAGTTGGGTGA 117 consensus_9340#1 CTTGCGGCCTGGAGTTATTGATGGCGCAATCAGTATTTCAGCAGTTCAGTGGTTATGCAA 295 ** * ** ***** * * * * * ** ***** * *** * * consensus_9340#0 ATGCGCTCTCTCTCTCTACA-CCATAGA--GCCGTTCATG-----TTCTGTAACCTTCTA 1123 consensus_9340#2 ATGCGCTCTCTCTCTTTACA-CCAAAGA--GCCGCTCATG-----TTCTGTAACCTTCTA 169 consensus_9340#1 TGCTGACAAGTCTTGTCACAACCCAAGATTGCGGTTAAAGGCTTTCTTTGGATCATTATA 355 * *** *** ** *** ** * * * * * ** * * ** ** consensus_9340#0 GCAATTCTGAGTTTTGA---CAAATGCTGT---GCAAATCTATGTCCTACTTTTGAAGGA 1177 consensus_9340#2 GCAATTTTGAGTTTTGA---CAAATGCTGT---GCAAATCTATGTCCTACTTTTGAAGAA 223 consensus_9340#1 TAGATGCCTAGCAAGGGGAGCAAGAGCCGTTTTGCAATTTTATGCTGATAATGTGAAGCA 415 ** ** * *** ** ** **** * **** * ***** * consensus_9340#0 TCCAGTATTGTATGTTTGTTGCTTAAAATTTTACATGGGTTTTGGCAAAAAAAAAATGCA 1237 consensus_9340#2 AAAAAAAAAAAAA----------------------------------------------- 236 consensus_9340#1 GAGTGAAATGATCGTGACTGCTGCCATGCGTGCTGGATTTGCAGGTGGAGTGGTTGTTGA 475 * consensus_9340#0 CG---------------------------------------------------------- 1239 consensus_9340#2 ------------------------------------------------------------ consensus_9340#1 CTGGCCTCACAGTTCANAAGCAAAGAAATCCTACCTTGTCCTCACTTGTGGACCACCTTC 535 consensus_9340#0 ------------------------------------------------------------ consensus_9340#2 ------------------------------------------------------------ consensus_9340#1 TCTAAATTCATCGCTTCCGAAGGGTAAAGGTCAAGATGGTGCCATGTGTAGTGATGATGA 595 consensus_9340#0 ------------------------------------------------------------ consensus_9340#2 ------------------------------------------------------------ consensus_9340#1 TGAGAGCGATGATGGAAGTGGTGATGAAGATGGAGCCCAAACAGTCGGCATATATGAAAG 655 consensus_9340#0 ------------------------------------------------------------ consensus_9340#2 ------------------------------------------------------------ consensus_9340#1 AAATAGGCCAAAGAAGAGGCAGAAGACGAAGAAGAACGGCAAGGGGCAGGCTTGGCTCTT 715 consensus_9340#0 ------------------------------------------------------------ consensus_9340#2 ------------------------------------------------------------ consensus_9340#1 TGACAAAAAGGAGCACCTGAAAAGGCGAGGACCGGAGGTGCCCGCGGACCCAAATCCACA 775 consensus_9340#0 ------------------- consensus_9340#2 ------------------- consensus_9340#1 GGCCGGAGCCGAAAGCTAC 794 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||