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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9454#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1261 fasta sequence
[GGCCATGTCCCAAGTGGATAGACGGTCCTGATCTTCTGCCGTGCTGTTCTGCTGGTGTTGCCGCATAACCCACGGCGGCGGCGCGTAGGCAAAGCCGGGAGGAAGGATTAGGGTTTAGGCGGCGGCCATGGCAGCTGAGGAGCAGACTCCGCGAACCAAACCCAGCACCGGGAACAGCAAGAAGAGGAAGAAGCCCAGGAAGGACAAGTGGGGCCAGCCTATCATCGACGCCGGCGATCGCCCGGCGGTTGAGCCGGAGC-CTGAGCCAGAGCCGGAGCCTGTCCCAGCGCCCGCAGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGGCGGGGATCTATGAAACCGGCAAGGTGGTGGCCAGCGGCCTGCCGTACACCACCACCGAGGCGGAGATCCGGGAGCTCTTCGAGCGGTTCGGTCCCCTCCGGTCGCTCCAGCTCTCTCGCTTCCCGGACTCCGGCAACTTCCGCGGCCTCGCGTTCGTCTCCTTCGAGTCAAACGAGGTGGTAATGAAGTCTCTTGAGCTTGACGGATTCAAAATTGGCAACAGGTTTATGAGAGTTGAAAGATGCAGGTTGGCTGCTGGCTCGAAGAGGAAAAGGACTGTGGAGTTCCAAACTGATCCTAAGAAGGCTGATGGGTGTCTGTCAGCATATGTTGGCAATCTCAAATGGGATGTTACAGAAACAGACTTAAGGGACTTCTTCAAGTCACTGAAGATTTCATCGATAAGGTTTGCTATCAACAAGAGAACAGGTGATTCTCGTGGTTTTTGTCATGTTGATTTTGAGGACGACGAGTCGCTTGAGAAGGCTGTAGGAATGAATCAATCTGAACTGCGCGGCCGACCTATCAAGATATCATATGCTGTCAGTAACAGGGGCTGAAGGCTACTAGATAGTAAACTTTGAGCATGAGCGAGCCTCAGTGTTATGCTTTTGCTCCCTCAGTTTTGTTACGGTTATATATCCGTATTAAGTTTCTACTGAAAGTGTTGTTTCTTGCATCAATCTCTATGTAGAATGTAATTCACCGTGTGACAAATACTTGGTGCTACTTAATATCGACCTTATAAAAAAGAAACAGAAATCTCTGTCAAATATAACTATCTGGTCATAGCAGTGGCGACTGATGTTGGAATGTTGTCTCATTGAGTTTGATGTCGAGGGCCTAAAGTTAGTAATTGTTGAGCTCAGAACTAAACCTAATCTTTTAGAGTATTATATCCCATCTGAATAGACGTTCTTTAACTAGAAAAAAAA]
[+] EMBL AK066740 [GGCCATGTCCCAAGTGGATAGACGGTCCTGATCTTCTGCCGTGCTGTTCTGCTGGTGTTGCCGCATAACCCACGGCGGCGGCGCGTAGGCAAAGCCGGGAGGAAGGATTAGGGTTTAGGCGGCGGCCATGGCAGCTGAGGAGCAGACTCCGCGAACCAAACCCAGCACCGGGAACAGCAAGAAGAGGAAGAAGCCCAGGAAGGACAAGTGGGGCCAGCCTATCATCGACGCCGGCGATCGCCCGGCGGTTGAGCCGGAGC CTGAGCCAGAGCCGGAGCCTGTCCCAGCGCCCGCAGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGGCGGGGATCTATGAAACCGGCAAGGTGGTGGCCAGCGGCCTGCCGTACACCACCACCGAGGCGGAGATCCGGGAGCTCTTCGAGCGGTTCGGTCCCCTCCGGTCGCTCCAGCTCTCTCGCTTCCCGGACTCCGGCAACTTCCGCGGCCTCGCGTTCGTCTCCTTCGAGTCAAACGAGGTGGTAATGAAGTCTCTTGAGCTTGACGGATTCAAAATTGGCAACAGGTTTATGAGAGTTGAAAGATGCAGGTTGGCTGCTGGCTCGAAGAGGAAAAGGACTGTGGAGTTCCAAACTGATCCTAAGAAGGCTGATGGGTGTCTGTCAGCATATGTTGGCAATCTCAAATGGGATGTTACAGAAACAGACTTAAGGGACTTCTTCAAGTCACTGAAGATTTCATCGATAAGGTTTGCTATCAACAAGAGAACAGGTGATTCTCGTGGTTTTTGTCATGTTGATTTTGAGGACGACGAGTCGCTTGAGAAGGCTGTAGGAATGAATCAATCTGAACTGCGCGGCCGACCTATCAAGATATCATATGCTGTCAGTAACAGGGGCTGAAGGCTACTAGATAGTAAACTTTGAGCATGAGCGAGCCTCAGTGTTATGCTTTTGCTCCCTCAGTTTTGTTACGGTTATATATCCGTATTAAGTTTCTACTGAAAGTGTTGTTTCTTGCATCAATCTCTATGTAGAATGTAATTCACCGTGTGACAAATACTTGGTGCTACTTAATATCGACCTTATA ]
[+] EMBL AU068512 [ GCAAAGCNGGGAGGAAGGATTAGGGTTTAGGCGGCGGCCATGGCAGCTGAGGAGCAGACTCCGCGAACCAAACCCAGCACCGGGAACAGCAAGAAGAGGAAGAAGCNCAGGAAGGACAAGTNGGGCCANCNTATCATCGACGCCGNCGATCGCCCGNCGGTTGAGCCGGAGCNTTTAGCCANAGCCGGAG ]
[+] EMBL CB677347 [ GGTTTAGGCGGCGGCCATGGCAGCTGAGGAGCAGACTCCGCGAACCAAACCCAGCACCGGGAACAGCAAGAAGAGGAAGAAGCCCAGGAAGGACAAGTGGGGCCAGCCTATCATCGACGCCGGCGATCGCCCGGCGGTTGAGCCGGAGC CTGAGCCAGAGCCGGAGCCTGTCCCAGCGCCCGCAGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGGCGGGGATCTATGAAACCGGCAAGGTGGTGGCCAGCGGCCTGCCGTACACCACCACCGAGGCGGAGATCCGGGAGCTCTTCGAGCGGTTCGGTCCCCTCCGGTCGCTCCAGCTCTCTCGCTTCCCGGACTCCGGCAACTTCCGCGGCCTCGCGTTCGTCTCCTTCGAGTCAAACGAGGTGGTAATGAAGTCTCTTGAGCTTGACGGATTCAAAATTGGCAACAGGTTTATGAGAGTTGAAAGATGCAGGTTGGCTGCTGGCTCGAAGAGGAAAAGGACTGTGGAGTTCCAAACTGATCCTAAGAAGGCTGATGGGTGTCTGTCAGCATATGTTGGCAATCTCAAATGGGATGTTACAGAAACAGACTTAAGGGACTTCTTCAAGTCACTGAAGATTTCATCGATAAGGTTTGCTATCAACAAGAGAACAGGTGATTCTCGTGGTTTTTGTCATGTTGATTTTGAGGACGACGAGTCGCTTGAGAAGGCTGTAGGAATGAATCAATCTGAACTGCGCGGCCGACCTATCAAGATATCATATGCTGTCAGTAACAGGGGCTGAAGGCTACTAGATAGTANACTTTGAGCATGA ]
[-] EMBL CB677348 [ TTGAGCCGGAGC CTGAGCCAGAGCCGGAGCCTGTCCCAGCGCCCGCAGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGGCGGGGATCTATGAAACCGGCAAGGTGGTGGCCAGCGGCCTGCCGTACACCACCACCGAGGCGGAGATCCGGGAGCTCTTCGAGCGGTTCGGTCCCCTCCGGTCGCTCCAGCTCTCTCGCTTCCCGGACTCCGGCAACTTCCGCGGCCTCGCGTTCGTCTCCTTCGAGTCAAACGAGGTGGTAATGAAGTCTCTTGAGCTTGACGGATTCAAAATTGGCAACAGGTTTATGAGAGTTGAAAGATGCAGGTTGGCTGCTGGCTCGAAGAGGAAAAGGACTGTGGAGTTCCAAACTGATCCTAAGAAGGCTGATGGGTGTCTGTCAGCATATGTTGGCAATCTCAAATGGGATGTTACAGAAACAGACTTAAGGGACTTCTTCAAGTCACTGAAGATTTCATCGATAAGGTTTGCTATCAACAAGAGAACAGGTGATTCTCGTGGTTTTTGTCATGTTGATTTTGAGGACGACGAGTCGCTTGAGAAGGCTGTAGGAATGAATCAATCTGAACTGCGCGGCCGACCTATCAAGATATCATATGCTGTCAGTAACAGGGGCTGAAGGCTACTAGATAGTAAACTTTGAGCATGAGCGAGCCTCAGTGTTATGCTTTTGCTCCCTCAGTTTTGTTACGGTTATATATCCGTATTAAGTTTCTACTGAAAGTGTTGTTTCTTGCATCAATCTCTATGTAGAATGTAATTCACCGTGAGGCAAATACTTGGTGCTACTTAATATCGACCTTATCAAAAAGAAA ]
[+] EMBL AU181482 [ TGTAGGAATGAATCAATCTGAACTGCGCGGCCGACCTATCAAGATATCATATGCTGTCAGTAACAGGGGCTGAAGGCTACTAGATAGTAAACTTTGAGCATGAGCGAGCCTCAGTGTTATGCTTTTGCTCCCTCAGTTTTGTTACGGTTATATATCCGTATTAAGTTTCTACTGAAAGTGTTGTTTCTTGCATCAATCTCTATGTAGAATGTAATTCNCCGTGTGACAAATACTTGGTGCTACTTAATATCGACCTTATAAACACTTCTCAGAAATCTCTGTCAAATATAACTATCTGGTCATAGCAGTGGCGACTGATGTTGGAATGTTGTCTCATTGAGTTTGATGTCGAGGGCCTAAAGTTAGTAATTGTTGAGCTCAGAACTAAACCTAATCTTTTAGAGTATTATATCCCATCTGAATAGACGTTCTTTAACTAGAAAAAAAA]
consensusID : consensus_9454#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 976 fasta sequence
[CCTGAAGTTTGATACCTGGGGGGGGAAAACGGGAGAATGGTTTGCGCCTTCAATAAGAAACCCACACAACAGCCCGACACAAAAAGAAACCCGAGGCAAGGGGCACCTTATAACCGGATTCCCGGGTAACGAGCTAACAAACGGACTGTCCAGGCCTTTTGCGCGCGGGGAGAAGAGAAAAGCGGGATTAATAACGGCAAGTGGGGGCACGGCCTCCGACACCCCCACGAGGGAAGACCGGAGCTCTTCGAGCGGTCGGGCCCCTCGGTGGTCCAGGTTTTTGCTTTCCGGACTCGGCAAATTCCGCGGCCTCGGGGTTGTCTCCTTCGAGTCAAACAAGGTGGCAATGAAGTCTCTTGAGCTTGACGGATTCCAAATTGGCAACAGGTTTATGAAAGTTGAAAGATGCAGGTTGGCTGCTGGCTCGAAGAGGAAAAGGACTGTGGAGTTCCAAACTGATCCTAAGAAGGCTGATGGGTGTCTGTCAGCATATGTTGGCAATCTCAAATGGGATGTTACAGAAACAGACTTAAGGGACTTCTTCAAGTCACTGAAGATTTCATCGATAAGGTTTGCTATCAACAAGAGAACAGGTGATTCTCGTGGTTTTTGTCATGTTGATTTTGAGGACGACGAGTCGCTTGAGAAGGCTGTAGGAATGAATCAATCTGAACTGCGCGGCCGACCTATCAAGATATCATATGCTGTCAGTAACAGGGGCTGAAGGCTACTAGATAGTAAACTTTGAGCATGAGCGAGCCTCAGTGTTATGCTTTTGCTCCCTCAGTTTTGTTACGGTTATATATCCGTATTAAGTTTCTACTGAAAGTGTTGTTTCTTGCATCAATCTCTATGTAGAATGTAATTCACCGTGTGACAAATACTTGGTGCTACTTAATATCGACCTTATAAACACTTCTCAGAAAAAAAAAAAAAAAAAAAAAAAAAAGTCGAGACTAGTTCTCCCTCTCTCTCT]
[-] EMBL BE040712 [CCTGAAGTTTGATACCTGGGGGGGGAAAACGGGAGAATGGTTTGCGCCTTCAATAAGAAACCCACACAACAGCCCGACACAAAAAGAAACCCGAGGCAAGGGGCACCTTATAACCGGATTCCCGGGTAACGAGCTAACAAACGGACTGTCCAGGCCTTTTGCGCGCGGGGAGAAGAGAAAAGCGGGATTAATAACGGCAAGTGGGGGCACGGCCTCCGACACCCCCACGAGGGAAGACCGGAGCTCTTCGAGCGGTCGGGCCCCTCGGTGGTCCAGGTTTTTGCTTTCCGGACTCGGCAAATTCCGCGGCCTCGGGGTTGTCTCCTTCGAGTCAAACAAGGTGGCAATGAAGTCTCTTGAGCTTGACGGATTCCAAATTGGCAACAGGTTTATGAAAGTTGAAAGATGCAGGTTGGCTGCTGGCTCGAAGAGGAAAAGGACTGTGGAGTTCCAAACTGATCCTAAGAAGGCTGATGGGTGTCTGTCAGCATATGTTGGCAATCTCAAATGGGATGTTACAGAAACAGACTTAAGGGACTTCTTCAAGTCACTGAAGATTTCATCGATAAGGTTTGCTATCAACAAGAGAACAGGTGATTCTCGTGGTTTTTGTCATGTTGATTTTGAGGACGACGAGTCGCTTGAGAAGGCTGTAGGAATGAATCAATCTGAACTGCGCGGCCGACCTATCAAGATATCATATGCTGTCAGTAACAGGGGCTGAAGGCTACTAGATAGTAAACTTTGAGCATGAGCGAGCCTCAGTGTTATGCTTTTGCTCCCTCAGTTTTGTTACGGTTATATATCCGTATTAAGTTTCTACTGAAAGTGTTGTTTCTTGCATCAATCTCTATGTAGAATGTAATTCACCGTGTGACAAATACTTGGTGCTACTTAATATCGACCTTATAAACACTTCTCAGAAAAAAAAAAAAAAAAAAAAAAAAAAGTCGAGACTAGTTCTCCCTCTCTCTCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9454#0 GGCCATGTCCCAAGTGGATAGACGGTCCTGATCTTCTGCCGTGCTGTTCTGCTGGTGTTG 60
consensus_9454#1 ------------------------------------------------------------
consensus_9454#0 CCGCATAACCCACGGCGGCGGCGCGTAGGCAAAGCCGGGAGGAAGGATTAGGGTTTAGGC 120
consensus_9454#1 ---------------------------------------------CCTGAAGTTTGATAC 15
* * * ** * *
consensus_9454#0 GGCGGCCATGGCAGCTGAGGAGCAGACTCCGCGAACCAAACCCAGCACCGGGAACAGCAA 180
consensus_9454#1 CTGGGGGGGGAAAACGGGAGAATGGTTTGCGCCTTCAATAAGAAACCCACACAACAGCCC 75
** * * * * ** * * *** * * * * * * ******
consensus_9454#0 GA-AGAGGAAGAAGCCCAGGAAGGACAAGTGGGGCCAGCCTATCATCGACGCCGGCGATC 239
consensus_9454#1 GACACAAAAAGAAACCCG----AGGCAAGGGG---CACCTTATAACCG--------GATT 120
** * * ***** *** * **** ** ** * *** * ** ***
consensus_9454#0 GCCCGGCGGTTGAGCCGGAGCCTGAGCCAGAGCCGGAGCCTGTCCCAGCGCCCGCAGCGG 299
consensus_9454#1 -CCCGGGTAACGAGCTA-----------ACAAACGGA--CTGTCCAGGC--CTTTTGCG- 163
***** **** * * **** ****** ** * ***
consensus_9454#0 CGGCGGCGGCGGAGGAGGAGGAGGAGGCGGGGATCTATGAAACCGGCAAGGTGGTGGCCA 359
consensus_9454#1 ---------CGCGGGGAGAAGAGAAAAGCGGGATTAATAA---CGGCAAG-TGGGGGC-- 208
** ** ** *** * ***** ** * ******* *** ***
consensus_9454#0 GCGGCCTGCCGTACACCACCACCGAGGCGGAGATCCGGGAGCTCTTCGAGCGGTTCGGTC 419
consensus_9454#1 ACGGCCT-CCG-ACACCCCCAC-GAGG-GAAGACC--GGAGCTCTTCGAGCGGTCGGGCC 262
****** *** ***** **** **** * *** * ***************** ** *
consensus_9454#0 CCCTCCGGTCGCTCCAGCTCTCTCGCTTCCCGGACTCCGGCAACTTCCGCGGCCTCGCGT 479
consensus_9454#1 CCT--CGGT-GGTCCAGGTTTTT-GCTTTCCGGACTC-GGCAAATTCCGCGGCCTCGGGG 317
** **** * ***** * * * **** ******** ***** ************* *
consensus_9454#0 TCGTCTCCTTCGAGTCAAACGAGGTGGTAATGAAGTCTCTTGAGCTTGACGGATTCAAAA 539
consensus_9454#1 TTGTCTCCTTCGAGTCAAACAAGGTGGCAATGAAGTCTCTTGAGCTTGACGGATTCCAAA 377
* ****************** ****** **************************** ***
consensus_9454#0 TTGGCAACAGGTTTATGAGAGTTGAAAGATGCAGGTTGGCTGCTGGCTCGAAGAGGAAAA 599
consensus_9454#1 TTGGCAACAGGTTTATGAAAGTTGAAAGATGCAGGTTGGCTGCTGGCTCGAAGAGGAAAA 437
****************** *****************************************
consensus_9454#0 GGACTGTGGAGTTCCAAACTGATCCTAAGAAGGCTGATGGGTGTCTGTCAGCATATGTTG 659
consensus_9454#1 GGACTGTGGAGTTCCAAACTGATCCTAAGAAGGCTGATGGGTGTCTGTCAGCATATGTTG 497
************************************************************
consensus_9454#0 GCAATCTCAAATGGGATGTTACAGAAACAGACTTAAGGGACTTCTTCAAGTCACTGAAGA 719
consensus_9454#1 GCAATCTCAAATGGGATGTTACAGAAACAGACTTAAGGGACTTCTTCAAGTCACTGAAGA 557
************************************************************
consensus_9454#0 TTTCATCGATAAGGTTTGCTATCAACAAGAGAACAGGTGATTCTCGTGGTTTTTGTCATG 779
consensus_9454#1 TTTCATCGATAAGGTTTGCTATCAACAAGAGAACAGGTGATTCTCGTGGTTTTTGTCATG 617
************************************************************
consensus_9454#0 TTGATTTTGAGGACGACGAGTCGCTTGAGAAGGCTGTAGGAATGAATCAATCTGAACTGC 839
consensus_9454#1 TTGATTTTGAGGACGACGAGTCGCTTGAGAAGGCTGTAGGAATGAATCAATCTGAACTGC 677
************************************************************
consensus_9454#0 GCGGCCGACCTATCAAGATATCATATGCTGTCAGTAACAGGGGCTGAAGGCTACTAGATA 899
consensus_9454#1 GCGGCCGACCTATCAAGATATCATATGCTGTCAGTAACAGGGGCTGAAGGCTACTAGATA 737
************************************************************
consensus_9454#0 GTAAACTTTGAGCATGAGCGAGCCTCAGTGTTATGCTTTTGCTCCCTCAGTTTTGTTACG 959
consensus_9454#1 GTAAACTTTGAGCATGAGCGAGCCTCAGTGTTATGCTTTTGCTCCCTCAGTTTTGTTACG 797
************************************************************
consensus_9454#0 GTTATATATCCGTATTAAGTTTCTACTGAAAGTGTTGTTTCTTGCATCAATCTCTATGTA 1019
consensus_9454#1 GTTATATATCCGTATTAAGTTTCTACTGAAAGTGTTGTTTCTTGCATCAATCTCTATGTA 857
************************************************************
consensus_9454#0 GAATGTAATTCACCGTGTGACAAATACTTGGTGCTACTTAATATCGACCTTATAAAAAAG 1079
consensus_9454#1 GAATGTAATTCACCGTGTGACAAATACTTGGTGCTACTTAATATCGACCTTATAA----- 912
*******************************************************
consensus_9454#0 AAACAGAAATCTCTGTCAAATATAACTATCTGGTCATAGCAGTGGCGACTGATGTTGGAA 1139
consensus_9454#1 ----ACACTTCTCAGAAAAAAAAAAAAAAAAAAAAAAAAAAGTCGAGACTAGTTCTCCCT 968
* * **** * *** * ** * * * *** * **** * *
consensus_9454#0 TGTTGTCTCATTGAGTTTGATGTCGAGGGCCTAAAGTTAGTAATTGTTGAGCTCAGAACT 1199
consensus_9454#1 CTCTCTCT---------------------------------------------------- 976
* ***
consensus_9454#0 AAACCTAATCTTTTAGAGTATTATATCCCATCTGAATAGACGTTCTTTAACTAGAAAAAA 1259
consensus_9454#1 ------------------------------------------------------------
consensus_9454#0 AA 1261
consensus_9454#1 --
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||