These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9534#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 873 fasta sequence [CACGAGAGCGGTGGCTATGCAGCCATGCGGGCGCCGTCTCCTCGGCGCCGGCACCGCCTCGCCGCCGCCGCTGCCGGGCTTGGGTTCGGCTTCGGCCCACTCGATGGACCGCGCGCAGCGGGCGCACATGGTGCGGGCGCTGGGGGTGACCACCACGGTGCTCTTCGTCGCCAGCGTCTCCTACATCGCGCTCACCGCGCTCTACGCCTGCTTCTGCGACGGCGGCGGGCGGCGACGGCGAGAAGACGGCGGGTCGTCGTCGGTGCGCCCCGAGCCGTCCGAGGAGACCAAGCGCGCGCTCGACGGGATCCCGGTGCACGTGGTCCAGATGCCGCCCCGCGACGGCGGCGGCGGCGGCGCCGACGAGGAGGGCGGCAGCGGCGACTGCGCGGTGTGCCTGGCGGAGTACGCCGCCGGGGACGAGGTGCGCGTGCTGCCGGCGTGCGGGCATGGGTTCCACAGGGAGTGCGTCGACCGGTGGCTGCTCACGCGCGCGCCCACCTGCCCCGTCTGCCGCGCACCCGTCGTCGCGCGCGTCGAGGGCCCGGACGACGACGCCAAGGAGGATTACTGCGGCGACGGCGAGAGCGTCGAGAGGCACGGCGGCGGCGGCGGCGACATTGGCTTCCTGTCCGTCGCCGGCGAGTCCCGCGTGCTTCCTGCGATTTGATTTTGCTACGAGTACTCATCAGCTGTAATAGGGTACTTAGTAGGTGTTTAGCTCAATTTTGCTAGCTGTGGACAAACGTAGCTTAGTAGGATGATTCGAGTTTGTTTATTGGCGAGAGCAATAACGATCATACGAGTAGTTTCACTTTCAGGGTTACAAGTTCATGTGCGATCAATCTGGTTATTTAGTTATTATACCTTCTT] [+] EMBL AK108282 [CACGAGAGCGGTGGCTATGCAGCCATGCGGGCGCCGTCTCCTCGGCGCCGGCACCGCCTCGCCGCCGCCGCTGCCGGGCTTGGGTTCGGCTTCGGCCCACTCGATGGACCGCGCGCAGCGGGCGCACATGGTGCGGGCGCTGGGGGTGACCACCACGGTGCTCTTCGTCGCCAGCGTCTCCTACATCGCGCTCACCGCGCTCTACGCCTGCTTCTGCGACGGCGGCGGGCGGCGACGGCGAGAAGACGGCGGGTCGTCGTCGGTGCGCCCCGAGCCGTCCGAGGAGACCAAGCGCGCGCTCGACGGGATCCCGGTGCACGTGGTCCAGATGCCGCCCCGCGACGGCGGCGGCGGCGGCGCCGACGAGGAGGGCGGCAGCGGCGACTGCGCGGTGTGCCTGGCGGAGTACGCCGCCGGGGACGAGGTGCGCGTGCTGCCGGCGTGCGGGCATGGGTTCCACAGGGAGTGCGTCGACCGGTGGCTGCTCACGCGCGCGCCCACCTGCCCCGTCTGCCGCGCACCCGTCGTCGCGCGCGTCGAGGGCCCGGACGACGACGCCAAGGAGGATTACTGCGGCGACGGCGAGAGCGTCGAGAGGCACGGCGGCGGCGGCGGCGACATTGGCTTCCTGTCCGTCGCCGGCGAGTCCCGCGTGCTTCCTGCGATTTGATTTTGCTACGAGTACTCATCAGCTGTAATAGGGTACTTAGTAGGTGTTTAGCTCAATTTTGCTAGCTGTGGACAAACGTAGCTTAGTAGGATGATTCGAGTTTGTTTATTGGCGAGAGCAATAACGATCATACGAGTAGTTTCACTTTCAGGGTTACAAGTTCATGTGCGATCAATCTGGTTATTTAGTTATTATACCTTCTT] [+] EMBL OS0482A [CACGAGAGCNGNGGCTATGCAGCCATGCGGGCGCCGTCTCCTCGGCGCCGGCACNGCCTNGCCGCCGCCGCTGCCGGGCTTGGGTTCGGCTTCGGCCCACTCGATGGACCGCGCGCAG GGNCGCACATNGTGCGGGCGCTGGGGGTGACCACCACGGTGCTCTTNGTCGCCAGCGTCTCCTACATCGCGCTCACCGCGCTCTACGCCTGCTTCTGCGACGGCGGCGGGCGGCGACGGCGAGAAGACGGCGGGTNGTCGTCGGTGCGCCCCGAGCNGTCCGAGGAGACCAAGCGCGCGCTCGACGGGATCCCGGTGCACG ] [+] EMBL AU166396 [ GGCGCACATGGTGCGGGCGCTGGGGGTGACCACCACGGTGCTCTTCGTCGCCAGCGTCTCCTACATCGCGCTCACCGCGCTCTACGCCTGCTTCTGCGACGGCGGCGGGCGGCGACGGCGAGAAGACGGCGGGTCGTCGTCGGTGCGCCCCGAGCCGTCCGAGGAGACCAAGCGCGCGCTCGACGGGATCCCGGTGCACGTGGTCCAGATGCCGCCCCGCGACGGCGGCGGCGGCGGCGCCGACGAGGAGGGCGGCAGCGGCGACTGCGCGGTGTGCCTGGCGGAGTACGCCGCCGGGGACGAGGTGCGCGTGCTGCCGGCGTGCGGGCATGGGTTCCACAGGGAGTGCGTCGACCGGTGGCTGCTCACGCGCGCGCCCACCTGCCCCGTCTGCCGCGCACCCGTCGTCGCGCGCGTCGAGGGCCCGG ] consensusID : consensus_9534#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 434 fasta sequence [GGGGACGAGGTGCGCGTGCTGCCGGCGTGCGGGCATGGGTTCCACAGGGAGTGCGTCGACCGGTGGCTGCTCACGCGCGCGCCCACCTGCCCCGTNTGCCGCGCACCCGTCGTCGCGCGCGTCGAGGGCCCGGACGACGACGCCAAGGAGGATTACTNCGGCGACGGCGANAGCGTCGAGAGGCACGGCGGCGGCGGCGGCGACATTGGCTTCCTGTCCGTCGCCGGCGAGTCCCGCGTGCTTCCTGCGATTTGATTTTGCTACGAGTACTCATCAGCTGTAATAGGGTACTTAGTAGGTGTTTAGCTCAATTTTGCTAGCTGTGGACAAACGTAGCTTAGTAGGATGATTCGAGTTTGTTTATTGGCGAGAGCAATAACGATCATACGAGTAGTTTCACTTTCAGGGTTACAAGTTC-----NAA--AAAAAAAAAAAAA] [+] EMBL AU166397 [GGGGACGAGGTGCGCGTGCTGCCGGCGTGCGGGCATGGGTTCCACAGGGAGTGCGTCGACCGGTGGCTGCTCACGCGCGCGCCCACCTGCCCCGTNTGCCGCGCACCCGTCGTCGCGCGCGTCGAGGGCCCGGACGACGACGCCAAGGAGGATTACTNCGGCGACGGCGANAGCGTCGANAGGCACGGCGGCGGCGGCGGCGACATTGGCTTCCTGTCCGTCGCCGGCGAGTCCCGCGTGCTTCCTGCGATTTGATTTTGCTACGAGTACTCATCAGCTGTAATAGGGTACTTAGTAGGTGTTTAGCTCAATTTTGCTAGCTGTGGACAAACGTAGCTTAGTAGGATGATTCGAGTTTGTTTATTGGCGAGAGCAATAACGATCATACGAGTAGTTTCACTTTCAGGGTTACAAGTTC NAA AAAAAAAAAAAAA] [-] EMBL CA761771 [ aGAGGACGA GACAAGGGGGATTACTGCGGCGACGGCGAGAGCATCGAGAGGCACGGCGGCGGCGGCGGCGACATTGGCTTCCTGTCCGTCGCCGGCGAGTCCCGCGTGCTTCCTGCGATTTGATTTTGCTACGAGTACTCATCAGCTGTAATAGGGTACTTAGTAGGTGTTTAGCTCAATTTTGCTAGCTGTGGACAAACGTAGCTGAGTAGGATGATTCGAGTTTGTTTATTGGCGAGATCAATAACGATCATACGAGTAGTTTCACTTTCAGGGTTAAAA AA AAAAAAta ] [+] EMBL AU091623 [ GAGGCACGGCGGCGGCGGCGGCGACATTGGCTTCCTGTCCGTCGCCGGCGAGTCCCGCGTGCTTCCTGCGATTTGATTTTGCTACGAGTACTCATCAGCTGTAATAGGGTACTTAGTAGGTGTTTAGCTCAATTTTGCTAGCTGTGGACAAACGTAGCTTAGTAGGATGATTCGAGTTTGTTTATTGGCGAGAGCAATAACGATCATACGAGTAGTTTCACTTTCAGGGTTACAAGTTCATGTGNGATCAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9534#0 CACGAGAGCGGTGGCTATGCAGCCATGCGGGCGCCGTCTCCTCGGCGCCGGCACCGCCTC 60 consensus_9534#1 ------------------------------------------------------------ consensus_9534#0 GCCGCCGCCGCTGCCGGGCTTGGGTTCGGCTTCGGCCCACTCGATGGACCGCGCGCAGCG 120 consensus_9534#1 ------------------------------------------------------------ consensus_9534#0 GGCGCACATGGTGCGGGCGCTGGGGGTGACCACCACGGTGCTCTTCGTCGCCAGCGTCTC 180 consensus_9534#1 ------------------------------------------------------------ consensus_9534#0 CTACATCGCGCTCACCGCGCTCTACGCCTGCTTCTGCGACGGCGGCGGGCGGCGACGGCG 240 consensus_9534#1 ------------------------------------------------------------ consensus_9534#0 AGAAGACGGCGGGTCGTCGTCGGTGCGCCCCGAGCCGTCCGAGGAGACCAAGCGCGCGCT 300 consensus_9534#1 ------------------------------------------------------------ consensus_9534#0 CGACGGGATCCCGGTGCACGTGGTCCAGATGCCGCCCCGCGACGGCGGCGGCGGCGGCGC 360 consensus_9534#1 ------------------------------------------------------------ consensus_9534#0 CGACGAGGAGGGCGGCAGCGGCGACTGCGCGGTGTGCCTGGCGGAGTACGCCGCCGGGGA 420 consensus_9534#1 -------------------------------------------------------GGGGA 5 ***** consensus_9534#0 CGAGGTGCGCGTGCTGCCGGCGTGCGGGCATGGGTTCCACAGGGAGTGCGTCGACCGGTG 480 consensus_9534#1 CGAGGTGCGCGTGCTGCCGGCGTGCGGGCATGGGTTCCACAGGGAGTGCGTCGACCGGTG 65 ************************************************************ consensus_9534#0 GCTGCTCACGCGCGCGCCCACCTGCCCCGTCTGCCGCGCACCCGTCGTCGCGCGCGTCGA 540 consensus_9534#1 GCTGCTCACGCGCGCGCCCACCTGCCCCGTNTGCCGCGCACCCGTCGTCGCGCGCGTCGA 125 ****************************** ***************************** consensus_9534#0 GGGCCCGGACGACGACGCCAAGGAGGATTACTGCGGCGACGGCGAGAGCGTCGAGAGGCA 600 consensus_9534#1 GGGCCCGGACGACGACGCCAAGGAGGATTACTNCGGCGACGGCGANAGCGTCGAGAGGCA 185 ******************************** ************ ************** consensus_9534#0 CGGCGGCGGCGGCGGCGACATTGGCTTCCTGTCCGTCGCCGGCGAGTCCCGCGTGCTTCC 660 consensus_9534#1 CGGCGGCGGCGGCGGCGACATTGGCTTCCTGTCCGTCGCCGGCGAGTCCCGCGTGCTTCC 245 ************************************************************ consensus_9534#0 TGCGATTTGATTTTGCTACGAGTACTCATCAGCTGTAATAGGGTACTTAGTAGGTGTTTA 720 consensus_9534#1 TGCGATTTGATTTTGCTACGAGTACTCATCAGCTGTAATAGGGTACTTAGTAGGTGTTTA 305 ************************************************************ consensus_9534#0 GCTCAATTTTGCTAGCTGTGGACAAACGTAGCTTAGTAGGATGATTCGAGTTTGTTTATT 780 consensus_9534#1 GCTCAATTTTGCTAGCTGTGGACAAACGTAGCTTAGTAGGATGATTCGAGTTTGTTTATT 365 ************************************************************ consensus_9534#0 GGCGAGAGCAATAACGATCATACGAGTAGTTTCACTTTCAGGGTTACAAGTTCATGTGCG 840 consensus_9534#1 GGCGAGAGCAATAACGATCATACGAGTAGTTTCACTTTCAGGGTTACAAGTTCNAAAAAA 425 ***************************************************** consensus_9534#0 ATCAATCTGGTTATTTAGTTATTATACCTTCTT 873 consensus_9534#1 AAAAAAAAA------------------------ 434 * ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||