These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9586#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1047 fasta sequence [CCAACCGGAGTTAAGGAAGAAGGGAAGGAAAGCCACCCGAGCAAGCGGATCACATCGAGGTAGGGGAGGACCGGAGGAGCTGAGCTCAGCTCGGTGAGGGGTGGACTGGGAGTGCGTGGGTGGGTGTGATGGAGTGGACGACGGTGGAGGCGGCGAACGGGGCCAAGCTGAGCGTGCGGCTGTTCAAGCCGGCGGCGG-GGGCGGAGGCGGCGGCGGCGGAGGACGTCGCGGTGGTGCTGGTGCACCCCTACACGATCCTGGGCGGCGTGCAGGGCCTGCTGCGCGGGATCGCCGAGGGCGTCGCGCGGCGC-GGGTACCGCGCCGTCACCTTCGACATGCGCGGCGCCGGGAGGTCCACCGGCCGCGCCTCGCTCACCGGCTCCACCGAGGTCGGGGACGTCGAGGCCGTCTGCCGCTGGGTCGCTGACAATCTCAACCCGCGCGGCGTCCTCCTCGTCGGCTCCTCCGCTGGAGCACCAATAGCGGGATCTGCAGTTGATAAGGTTGACCAGGTCATTGGTTATGTTAGCATTGGGTACCCATTTGGTCTAATGGCCTCGGTCCTATTTGGCAGACACCACAATGCTATCCTCAAGTCTGAGAAACCAAAGTTATTCGTCATGGGAACTAAAGATGGCTTCACAAGTGTAAAGCAGCTGCAAAACAAGCTCAAGAATGCAGCAGGACGGGTTGATACTCACTTGATCGAAGGAGCTGGCCACTTCCAAATGGAAGGCCCTGCTTTTGATGCACGAATGGTTGACCTTATTGTTAATTTCATCAAATCCTTGCCCAAATAGCATTGACAGTGACTGTGTGCAAATTTGTCATGATTGTAGTGAGTTAGTGACAAACAAAAGAAGCTATTGAACAGTGCATTCATGGTGTGTATTTTCTCATCTTGTAATTGTACACTTGGTGTTGTAATTTTAGTTCAATCCGTGTTTCTTTCGAAGCCTAGTGTAAGATGATGAGTTTCAGATACAATACATTTACAGGATATGACATTTCATGGTTTCAGTCNAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK063741 [CCAACCGGAGTTAAGGAAGAAGGGAAGGAAAGCCACCCGAGCAAGCGGATCACATCGAGGTAGGGGAGGACCGGAGGAGCTGAGCTCAGCTCGGTGAGGGGTGGACTGGGAGTGCGTGGGTGGGTGTGATGGAGTGGACGACGGTGGAGGCGGCGAACGGGGCCAAGCTGAGCGTGCGGCTGTTCAAGCCGGCGGCGG GGGCGGAGGCGGCGGCGGCGGAGGACGTCGCGGTGGTGCTGGTGCACCCCTACACGATCCTGGGCGGCGTGCAGGGCCTGCTGCGCGGGATCGCCGAGGGCGTCGCGCGGCGC GGGTACCGCGCCGTCACCTTCGACATGCGCGGCGCCGGGAGGTCCACCGGCCGCGCCTCGCTCACCGGCTCCACCGAGGTCGGGGACGTCGAGGCCGTCTGCCGCTGGGTCGCTGACAATCTCAACCCGCGCGGCGTCCTCCTCGTCGGCTCCTCCGCTGGAGCACCAATAGCGGGATCTGCAGTTGATAAGGTTGACCAGGTCATTGGTTATGTTAGCATTGGGTACCCATTTGGTCTAATGGCCTCGGTCCTATTTGGCAGACACCACAATGCTATCCTCAAGTCTGAGAAACCAAAGTTATTCGTCATGGGAACTAAAGATGGCTTCACAAGTGTAAAGCAGCTGCAAAACAAGCTCAAGAATGCAGCAGGACGGGTTGATACTCACTTGATCGAAGGAGCTGGCCACTTCCAAATGGAAGGCCCTGCTTTTGATGCACGAATGGTTGACCTTATTGTTAATTTCATCAAATCCTTGCCCAAATAGCATTGACAGTGACTGTGTGCAAATTTGTCATGATTGTAGTGAGTTAGTGACAAACAAAAGAAGCTATTGAACAGTGCATTCATGGTGTGTATTTTCTCATCTTGTAATTGTACACTTGGTGTTGTAATTTTAGTTCAATCCGTGTTTCTTTCGAAGCCTAGTGTAAGATGATGAGTTTCAGATACAATACATTTACAGGATATGACATT ] [+] EMBL C74354 [ ACGGTGGAGGCGGCGAACGGGGCCAAGCTGAGCGTGCGGCTGTTCAAGCCGGCGGCGGTGGGCGGAGGCGGCGGCGGCGGAGGACGTCGCGGTGGTGCTGGTGCA CCCTACACGATCCTGGGCGGCGTGCAGGGCCTGCTGCGCGGGATCGCCGAGGGCGTCGCGCGGCGCGGGGTAAC NTNCNACCCTTTCGACATGCGCNGCGCCGGGAAGTCCACCGGCCGCGCCTCGCTCACCGGCTCCANCGANGTCGGGGACGTCGAAGCCGTCTGCCGCTGGGTCGCTG ] [+] EMBL CB678792 [ AGTGTACTTCAGCTGCAAAACAAGCTCAAGAATGCAGCAGGACGGGTTGATACTCACTTGATCGAAGGAGCTGGCCACTTCCAAATGGAAGGCCCTGCTTTTGATGCACGAATGGTTGACCTTATTGTTAATTTCATCAAATCCTTGCCCAAATAGCATTGACAGTGACTGTGTGCAAATTTGTCATGATTGTAGTGAGTTAGTGACAAACAAAAGAAGCTATTGAACAGTGCATTCATGGTGTGTATTTTCTCATCTTGTAATTGTACACTTGGTGTTGTAATTTTAGTTCAATCCGTGTTTCTTTCGAAGCCTAGTGTAAGATGATGAGTTTCAGATACAATACATTTACAGGATATGACATTTCATGGT ] [+] EMBL AU172802 [ GACCTTATTGTTAATTTCATCAAATCCTTGCCCAAANAGCATTGACAGTGACTGTGNGCAAATTTGTCATGATTGTAGTGAGTTAGTGACAAACAAAANAAGCTATTGAACAGNGCATTCATGGNGNGTATTTTCTCATCTTGNAATTGNACACTTGGTGTTGTAATTTTAGTTCAATCCGTGTTTCTTTNGAAGCCTAGTGTAANATGATGAGTTTCAGATACAATACATTTACAGGATATGACATTTCATGGTTTCAGTCNAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_9586#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 463 fasta sequence [AGGTTGACCAGGTCATTGGTTATGTTAGCATTGGGTACCCATTTGGTCTAATGGCCTCGGTCCTATTTGGCAGACACCACAATGCTATCCTCAAGTCTGAGAAACCAAAGTTATCCTCATGGGAACTAAAGATGGCTTCACAAGTGTAAAGCAGCTGCAAAACAAGCTCAAGAATGCAGCAGGACGGGTTGATACTCACTTGATCGAAGGAGCTGGCCACTTCCAAATGGAAGGCCCTGCTTTTGATGCACGAATGGTTGACCTTATTGTTAATTTCATCAAATCCTTGCCCAAATAGCATTGACAGTGACTGTGTGCAAATTTGTCATGATTGTAGTGAGTTAGTGACAAACAAAAGAAGCTATTGAACAGTGCATTCATGGTGTGTATTTTCTCATCTTGTAATTGTACACTTGGTGTTGTAATTTTAGTTCAATCCGTGTTTCTTTCGAAAAAAAAAAAA] [+] EMBL AU101407 [AGGTTGACCAGGTCATTGGTTATGTTAGCATTGGGTACCCATTTGGTCTAATGGCCTCGGTCCTATTTGGCAGACACCACAATGCTATCCTCAAGTCTGAGAAACCAAAGTTATCCTCATGGGAACTAAAGATGGCTTCACAAGTGTAAAGCAGCTGCAAAACAAGCTCAAGAATGCAGCAGGACGGGTTGATACTCACTTGATCGAAGGAGCTGGCCACTTCCAAATGGAAGGCCCTGCTTTTGATGCACGAATGGTTGACCTTATTGTTAATTTCATCAAATCCTTGCCCAAATAGCATTGACAGTGACTGTGTGCAAATTTGTCATGATTGTAGTGAGTTAGTGACAAACAAAAGAAGCTATTGAACAGTGCATTCATGGTGTGTATTTTCTCATCTTGTAATTGTACACTTGGTGTTGTAATTTTAGTTCAATCCGTGTTTCTTTCGAAAAAAAAAAAA] consensusID : consensus_9586#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 296 fasta sequence [GGAGGACGTCGCGGTGGTGCTGGTGCACCCTACACGATCCTGGGCGGCGTGCANGGCCTGCTGCGCGGGATNGNCGAGGGCGTNGCGCGGCGCGGTGTACNNTTCTACGCTTTCGACATGCGCGGCGCCGGGAGGTCCACCGGCCGCGCTCGCTCACCGGCTCCACCGAGGTCGGGGACGTCGAGGCCGTNTGCCGCTGGGTCGCTGANAATCTCAAACCGCGCGGCGTCCTCNTCGTCGGCTCCTNCGCTGGAGCACCAATAGCGGGATTTGCAATTGAAAAGGTTGAACAGGTC] [+] EMBL C74233 [GGAGGACGTCGCGGTGGTGCTGGTGCACCCTACACGATCCTGGGCGGCGTGCANGGCCTGCTGCGCGGGATNGNCGAGGGCGTNGCGCGGCGCGGTGTACNNTTCTACGCTTTCGACATGCGCGGCGCCGGGAGGTCCACCGGCCGCGCTCGCTCACCGGCTCCACCGAGGTCGGGGACGTCGAGGCCGTNTGCCGCTGGGTCGCTGANAATCTCAAACCGCGCGGCGTCCTCNTCGTCGGCTCCTNCGCTGGAGCACCAATAGCGGGATTTGCAATTGAAAAGGTTGAACAGGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9586#0 CCAACCGGAGTTAAGGAAGAAGGGAAGGAAAGCCACCCGAGCAAGCGGATCACATCGAGG 60 consensus_9586#1 ------------------------------------------------------------ consensus_9586#2 ------------------------------------------------------------ consensus_9586#0 TAGGGGAGGACCGGAGGAGCTGAGCTCAGCTCGGTGAGGGGTGGACTGGGAGTGCGTGGG 120 consensus_9586#1 ------------------------------------------------------------ consensus_9586#2 ------------------------------------------------------------ consensus_9586#0 TGGGTGTGATGGAGTGGACGACGGTGGAGGCGGCGAACGGGGCCAAGCTGAGCGTGCGGC 180 consensus_9586#1 ------------------------------------------------------------ consensus_9586#2 ------------------------------------------------------------ consensus_9586#0 TGTTCAAGCCGGCGGCGGGGGCGGAGGCGGCGGCGGCGGAGGACGTCGCGGTGGTGCTGG 240 consensus_9586#1 ------------------------------------------------------------ consensus_9586#2 ------------------------------------------------------------ consensus_9586#0 TGCACCCCTACACGATCCTGGGCGGCGTGCAGGGCCTGCTGCGCGGGATCGCCGAGGGCG 300 consensus_9586#1 ------------------------------------------------------------ consensus_9586#2 ------------------------------------------------------------ consensus_9586#0 TCGCGCGGCGCGGGTACCGCGCCGTCACCTTCGACATGCGCGGCGCCGGGAGGTCCACCG 360 consensus_9586#1 ------------------------------------------------------------ consensus_9586#2 ------------------------------------------------------------ consensus_9586#0 GCCGCGCCTCGCTCACCGGCTCCACCGAGGTCGGGGACGTCGAGGCCGTCTGCCGCTGGG 420 consensus_9586#1 ------------------------------------------------------------ consensus_9586#2 ------------------------------------------------------------ consensus_9586#0 TCGCTGACAATCTCAACCCGCGCGGCGTCCTCCTCGTCGGCTCCTCCGCTGGAGCACCAA 480 consensus_9586#1 ------------------------------------------------------------ consensus_9586#2 ------------------------------------------------------------ consensus_9586#0 TAGCGGGATCTGCAGTTGATAAGGTTGACCAGGTCATTGGTTATGTTAGCATTGGGTACC 540 consensus_9586#1 ---------------------AGGTTGACCAGGTCATTGGTTATGTTAGCATTGGGTACC 39 consensus_9586#2 ------------------------------------------------------------ consensus_9586#0 CATTTGGTCTAATGGCCTCGGTCCTATTTGGCAGACACCACAATGCTATCCTCAAGTCTG 600 consensus_9586#1 CATTTGGTCTAATGGCCTCGGTCCTATTTGGCAGACACCACAATGCTATCCTCAAGTCTG 99 consensus_9586#2 ------------------------------------------------------------ consensus_9586#0 AGAAACCAAAGTTATTCGTCATGGGAACTAAAGATGGCTTCACAAGTGTAAAGCAGCTGC 660 consensus_9586#1 AGAAACCAAAGTTATCC-TCATGGGAACTAAAGATGGCTTCACAAGTGTAAAGCAGCTGC 158 consensus_9586#2 -------------------------------GGAGGACGTCGCGGTGGTGCTGGTGC-AC 28 ** * * ** * ** * ** * consensus_9586#0 AAAACAAGCTCAAGAATGCAGCAGGACGGGTTGATACTCACT-TGATCGAAGGAGCTGGC 719 consensus_9586#1 AAAACAAGCTCAAGAATGCAGCAGGACGGGTTGATACTCACT-TGATCGAAGGAGCTGGC 217 consensus_9586#2 CCTACACGATCCTGGGCGGCGT-GCANGGCCTGCTGCGCGGGATNGNCGAGGGCGTNGCG 87 *** * ** * * * * * ** ** * * * * *** ** * * consensus_9586#0 CACTTCCAAATGGAAGGCCCTGCTTTTGATGCACGAATGGTTGACCTTATTGTTAATTTC 779 consensus_9586#1 CACTTCCAAATGGAAGGCCCTGCTTTTGATGCACGAATGGTTGACCTTATTGTTAATTTC 277 consensus_9586#2 CGGCGCGGTGTACNNTTCTACGCTTTCGACATGCG---------CGGCGCCGGGAGGTCC 138 * * * * ***** ** ** * * * * * consensus_9586#0 ATCAAATCCTTGCCCAAATAGCATTGACAGTGACTGTGTGCAAATTTGTCATGATTGTAG 839 consensus_9586#1 ATCAAATCCTTGCCCAAATAGCATTGACAGTGACTGTGTGCAAATTTGTCATGATTGTAG 337 consensus_9586#2 ACCGGCCGCGCTCGCTCACCGGCTCCACCGAGGTCGGGGACGTCGAGGCCGTN-TGCCGC 197 * * * * * * * * ** * * * * * * * * * consensus_9586#0 TGAGTTAGTGACAAACAAAAGAAGCTATTGAACAGTGCATTCATGGTGTGTATTTTCTCA 899 consensus_9586#1 TGAGTTAGTGACAAACAAAAGAAGCTATTGAACAGTGCATTCATGGTGTGTATTTTCTCA 397 consensus_9586#2 TGGGTCGCTGANAATCTCAA------ACCGCGCGGCGTCCTCNTCGT---CGGCTCCTNC 248 ** ** *** ** * ** * * * * * ** * ** * ** consensus_9586#0 TCTTGTAATTGTACACTTGGTGTTGTAATTTTA---GTTCAATCCGTGTTTCTTTCGAAG 956 consensus_9586#1 TCTTGTAATTGTACACTTGGTGTTGTAATTTTA---GTTCAATCCGTGTTTCTTTCGAAA 454 consensus_9586#2 GCTGGAGCACCAATAGCGGGATTTGCAATTGAAAAGGTTGAACAGGTC------------ 296 ** * * * ** *** **** * *** ** ** consensus_9586#0 CCTAGTGTAAGATGATGAGTTTCAGATACAATACATTTACAGGATATGACATTTCATGGT 1016 consensus_9586#1 AAAAAAAAA--------------------------------------------------- 463 consensus_9586#2 ------------------------------------------------------------ consensus_9586#0 TTCAGTCNAAAAAAAAAAAAAAAAAAAAAAA 1047 consensus_9586#1 ------------------------------- consensus_9586#2 ------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||