|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9594#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1777 fasta sequence
[GAGATATCTCTTTCCACCGCAGCAGCCATGGCTGAGGGCGAGACGCCCCCCTCCTCCTCCGCCGCCGCCGCGGCCCCCGTCCTCGCCGCGCTCGCCTCGCTCCAGACCTACTCCTCCGCGCTCTCCGCATTCACCTCCGCATGGCGGGCTCTCTACTCCGACGCCACCGCGCTCGACTCAACCCTCGCGTCCCGCCTCGAGGGCTTCTCCGAGCTCGACCTGCTGTGCTCCGCCATGGACGGGCCAGGCCTCCGCGCGTACCTCACCGAGCACAGGGACGCGCTGCAGGACTCGTCCCTGCCGGCCCTCGACGCCGCCCTCCTGGTGGCCCCCGACCCGGGGCGCCTGGTGCTCTCCGCGGCGGCGGGCTTCTGCCGCGCGCCGCCTACGGAAGGTGCGGCCAAGGTGGCGTGCCGCCTGCTCGTCGACCTGCTCGACCGGCTGCGCGCGCTCGGCGTGAAGCCCTCGCCGGAGGCGCGCGACGAGGCCAGGGCTATCGCGGCCGACTGGAAGCGGAGCAAGCGGATCGGGCCGCAGGCCGTGCTTAAGAAGGAGACGATCGCCTTCCTGCTCCTCGTGGGGGCGTTTGGGTTGGTGGATGATGTCGGCGACGCGAGCGAGGTGCTCGATCTGGTCGTGTCGGTGTCTGGCCGGGAGCGCGCCGTTGAGGCTTTCGTCGGCCTTGGGCTCGATCTTGAGAAGCACATGCCAGTTTTCATTCATACAATGATAAAGAAAGGCAAACAGCTGGAGGCGGTTAAATTCATTCAAGCTCTTAATTTGGTGGAAAAATATCCTTTATTGCCTGTTCTGAGGTCGTACATCAGTGATGCTGCAAAAGCTGGGAACATGATCCGCATCAGAGGAGATGATTCTGCTTGTCAGACTGAAGCCGATGCAAAAGAGCGCATGCTGCTC-GGAGTATTGCAGAAGTTCATCAAAGACCAGAAGCTAGAAGAACTACCTATTTTGGAAATAGTTAAACAGCGGCTGGCACATTTGGAGAAGAAAAGTGTGGAGAGAAAGCGAGCAGCTAGTGCTGCTATTGAAGCAGCTCATGAAGTAAGTAAGAAGATTCAGAAGCAAGAGAAGCAACAGCAGCAGGTGCAGTCAGCTATGCGATCACGGGTTCCAGGTAAAGCAGCACAAAATTCCTTAAGCCAAAACATCCATTCGGTTGATTCCCTCAGTCGACCGCTCATGTCGAGCCAGAGCATGGGTATCTCAGGAGTATTAAATTTGTACCAAGCTGCTTCAAGCCAGAATATAATTCCGGCTATTAGTCCGAGCCCACTGAGCCAACATCCCGTTGGCATCAAGAATCAGACCCTGAATACACCGCCTGTTCAGACTCGGTATGGTGGCTTGGCTGACTACTATGGACTGTCCTCCGGCAGACCTAGGCCCGACTCTGTATCTCCT-GGATCAAGTGTTA-CGAGTGCACACACATCTTCCAGATCAAAGCTCTATTCTGCAGATCCCCTGGCTGCTGTCTCCCGAGCATCAGATAAGAAGGGTTCGTCTTACAACTA-TTCGTTGTCAAGTATGTCGACATATAATCCTAATCCATAAATAACCTCGATATGGTTCTTATGCCCCCTCCCTCTGGGGGACTAACATGTAAATTTTAGTTTGAGGCCAAGCAGAGGCTGCTGATCCTGTGTAAATTCCAAATATTCATATAGATTAATATAAATGCTTGGCTATATCATCCGTGGACTGTTAATTCTTGTGACATTTGGACCNGGTCTAATGATATTTTGCTGGTTTTTAAAAA]
[+] EMBL AK069459 [GAGATATCTCTTTCCACCGCAGCAGCCATGGCTGAGGGCGAGACGCCCCCCTCCTCCTCCGCCGCCGCCGCGGCCCCCGTCCTCGCCGCGCTCGCCTCGCTCCAGACCTACTCCTCCGCGCTCTCCGCATTCACCTCCGCATGGCGGGCTCTCTACTCCGACGCCACCGCGCTCGACTCAACCCTCGCGTCCCGCCTCGAGGGCTTCTCCGAGCTCGACCTGCTGTGCTCCGCCATGGACGGGCCAGGCCTCCGCGCGTACCTCACCGAGCACAGGGACGCGCTGCAGGACTCGTCCCTGCCGGCCCTCGACGCCGCCCTCCTGGTGGCCCCCGACCCGGGGCGCCTGGTGCTCTCCGCGGCGGCGGGCTTCTGCCGCGCGCCGCCTACGGAAGGTGCGGCCAAGGTGGCGTGCCGCCTGCTCGTCGACCTGCTCGACCGGCTGCGCGCGCTCGGCGTGAAGCCCTCGCCGGAGGCGCGCGACGAGGCCAGGGCTATCGCGGCCGACTGGAAGCGGAGCAAGCGGATCGGGCCGCAGGCCGTGCTTAAGAAGGAGACGATCGCCTTCCTGCTCCTCGTGGGGGCGTTTGGGTTGGTGGATGATGTCGGCGACGCGAGCGAGGTGCTCGATCTGGTCGTGTCGGTGTCTGGCCGGGAGCGCGCCGTTGAGGCTTTCGTCGGCCTTGGGCTCGATCTTGAGAAGCACATGCCAGTTTTCATTCATACAATGATAAAGAAAGGCAAACAGCTGGAGGCGGTTAAATTCATTCAAGCTCTTAATTTGGTGGAAAAATATCCTTTATTGCCTGTTCTGAGGTCGTACATCAGTGATGCTGCAAAAGCTGGGAACATGATCCGCATCAGAGGAGATGATTCTGCTTGTCAGACTGAAGCCGATGCAAAAGAGCGCATGCTGCTC GGAGTATTGCAGAAGTTCATCAAAGACCAGAAGCTAGAAGAACTACCTATTTTGGAAATAGTTAAACAGCGGCTGGCACATTTGGAGAAGAAAAGTGTGGAGAGAAAGCGAGCAGCTAGTGCTGCTATTGAAGCAGCTCATGAAGTAAGTAAGAAGATTCAGAAGCAAGAGAAGCAACAGCAGCAGGTGCAGTCAGCTATGCGATCACGGGTTCCAGGTAAAGCAGCACAAAATTCCTTAAGCCAAAACATCCATTCGGTTGATTCCCTCAGTCGACCGCTCATGTCGAGCCAGAGCATGGGTATCTCAGGAGTATTAAATTTGTACCAAGCTGCTTCAAGCCAGAATATAATTCCGGCTATTAGTCCGAGCCCACTGAGCCAACATCCCGTTGGCATCAAGAATCAGACCCTGAATACACCGCCTGTTCAGACTCGGTATGGTGGCTTGGCTGACTACTATGGACTGTCCTCCGGCAGACCTAGGCCCGACTCTGTATCTCCT GGATCAAGTGTTA CGAGTGCACACACATCTTCCAGATCAAAGCTCTATTCTGCAGATCCCCTGGCTGCTGTCTCCCGAGCATCAGATAAGAAGGGTTCGTCTTACAACTA TTCGTTGTCAAGTATGTCGACATATAATCCTAATCCATAAATAACCTCGATATGGTTCTTATGCCCCCTCCCTCTGGGGGACTAACATGTAAATTTTAGTTTGAGGCCAAGCAGAGGCTGCTGATCCTGTGTAAATTCCAAATATTCATATAGATTAATATAA ]
[+] EMBL OSS1915A [ GCGACGCGAGCNAGGTGCTCGATCTGGTCGTGTCGGTGTCTGGCCGGGAGCGCGCCGTTGAGGCTTTCGTCGGCCTTGGGCTCGATCTTGAGAAGCACATGCCAGTTTTCATTCATACAATGATAAAGAAAGGCAAACAGCTGGAGGCGGTTAAATTCATTCAAGCTCTTAATTTGGTGGAAAAATATCCTTTATTGCCTGTTCTGAGGTCGTACATCAGTGATGCTGCAAAAGCTGGGAACATGATCCGCATCAGAGGAGATGATTCTGCTTGTCAGACTNAAGCCGATGCAAAAGAGCGCAT CTGCTCGGGAGTATTGCAG AGTTCATC AAGACCAGAAGCTAG AGGACTACCTATTTTGG AATAGTTAA ]
[+] EMBL C27930 [ AGCAACAGCAGCAGGTGCAGTCAGCTATGCNATCACGGGTTCCAGGTAAAGCAGCACAAAATTCCTTAAGCCAAAACATCCATTCGGTTGATTCCCTCAGTCGACCGCTCATGTCGAGCCAGAGCATGGGTATCTCAGGAGTATTAAATTTGTACCAAGCTGCTTCAAGCCAGANTATAATTCCGGCTATTAGTCCGAGCCCACTGAGCCAACATCCCGTTGGCATCAAGAATCAGACCCTGAATACACCGCCTGTTCAGACTCGGTATGGTGGCTTGGCTGACTACTATGGACTGTCCTCCGGCAGACCTAGGCCCGANTCTGTATCTCCTGGGATCAAGTGTTA CGAGTNCACACACATCTTCCAGATCAAAGCTCTATTCTGCAGATCCCCTGGCTGCTGTNTCCCGAGCATCAGATAAGAAGGG TCGTTTTACAAt ]
[+] EMBL BQ906138 [ TCCCGTTGGCATCAAGAATCAGACCCTGAATACACCGCCTGTTCAGACTCGGTATGGTGGCTTGGCTGACTACTATGGACTGTCCTCCGGCAGACCTAGGCCCGACTCTGTATCTCCT GGATCAAGTGTTACCGAGTGCACACACATCTTCCAGATCAAAGCTCTATTCTGCAGATCCCCTGGCTGCTGTCTCCCGAGCATCAGATAAGAAGGGTTCGTCTTACAACTATTTCGTTGTCAAGTATGTCGACATATAATCCTAATCCATAAATAACCTCGATATGGTTCTTATGCCCCCTCCCTCTGGGGGACTAACATGTAAATTTTAGTTTGAGGCCAAGCAGAGGCTGCTGATCCTGTGTAAATTCCAAATATTCATATAGATTAATATAAATGCTTGGCTATATCATCCGTGGACTGTTAATTCTTGTGACATTTGGACCNGGTCTAATGATATTTTGCTGGTTTTTAAAAA]
consensusID : consensus_9594#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 301 fasta sequence
[CCCCCGTCCTCGCCGNGCTCGCCTCGCTCCAGACCTACTCCTCCGCGCTCTCCGNATTCACCTCCGCATGGCGGGCTCTCTACTCCGACGCCACCGCGCTCGACTCAACCCTCGCGTCCCGCCTCGAGGGCTTCTCCGAGCTCGACCTGNTGTGCTCCGCCATGGACGGGCCAGGNCTCCGCGCGTACCTCACCGAGCACAGGGACGCGCTGNAGGACTCGTCCCTNANGNACCTNGACGANGNCCTNNTGGTGGNCCCCNACCNGGGNNGACTNGTGNTATCNGNGGCGGCGAGNTTNTN]
[+] EMBL OS0292A [CCCCCGTCCTCGCCGNGCTCGCCTCGCTCCAGACCTACTCCTCCGCGCTCTCCGNATTCACCTCCGCATGGCGGGCTCTCTACTCCGACGCCACCGCGCTCGACTCAACCCTCGCGTCCCGCCTCGAGGGCTTCTCCGAGCTCGACCTGNTGTGCTCCGCCATGGACGGGCCAGGNCTCCGCGCGTACCTCACCGAGCACAGGGACGCGCTGNAGGACTCGTCCCTNANGNACCTNGACGANGNCCTNNTGGTGGNCCCCNACCNGGGNNGACTNGTGNTATCNGNGGCGGCGAGNTTNTN]
consensusID : consensus_9594#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 237 fasta sequence
[CTGCTGTCTCCCGAGCATCAGATAAGAAGGGTTCGTCTTACAACTATNCGTTGTCAAGTATGTCGACATATAANCCTAATCCATAAATAACCNCGATATGGTTCTTATGCCCCCTCCTTCTGGGGGACTANCATGTAAATTTTAGTTTGAGGCCAAGCAGAGGCTGCTGATCCTGTGTAAATTCCAAATATTCATATAGATTAATATAAATGCTTGGCTAAAAAAAAAAAAAAAAAA]
[+] EMBL AU161100 [CTGCTGTCTCCCGAGCATCAGATAAGAAGGGTTCGTCTTACAACTATNCGTTGTCAAGTATGTCGACATATAANCCTAATCCATAAATAACCNCGATATGGTTCTTATGCCCCCTCCTTCTGGGGGACTANCATGTAAATTTTAGTTTGAGGCCAAGCAGAGGCTGCTGATCCTGTGTAAATTCCAAATATTCATATAGATTAATATAAATGCTTGGCTAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9594#0 GAGATATCTCTTTCCACCGCAGCAGCCATGGCTGAGGGCGAGACGCCCCCCTCCTCCTCC 60
consensus_9594#2 ------------------------------------------------------------
consensus_9594#1 ------------------------------------------------------------
consensus_9594#0 GCCGCCGCCGCGGCCCCCGTCCTCGCCGCGCTCGCCTCGCTCCAGACCTACTCCTCCGCG 120
consensus_9594#2 ------------------------------------------------------------
consensus_9594#1 ------------------------------------------------------------
consensus_9594#0 CTCTCCGCATTCACCTCCGCATGGCGGGCTCTCTACTCCGACGCCACCGCGCTCGACTCA 180
consensus_9594#2 ------------------------------------------------------------
consensus_9594#1 ------------------------------------------------------------
consensus_9594#0 ACCCTCGCGTCCCGCCTCGAGGGCTTCTCCGAGCTCGACCTGCTGTGCTCCGCCATGGAC 240
consensus_9594#2 ------------------------------------------------------------
consensus_9594#1 ------------------------------------------------------------
consensus_9594#0 GGGCCAGGCCTCCGCGCGTACCTCACCGAGCACAGGGACGCGCTGCAGGACTCGTCCCTG 300
consensus_9594#2 ------------------------------------------------------------
consensus_9594#1 ------------------------------------------------------------
consensus_9594#0 CCGGCCCTCGACGCCGCCCTCCTGGTGGCCCCCGACCCGGGGCGCCTGGTGCTCTCCGCG 360
consensus_9594#2 ------------------------------------------------------------
consensus_9594#1 ------------------------------------------------------------
consensus_9594#0 GCGGCGGGCTTCTGCCGCGCGCCGCCTACGGAAGGTGCGGCCAAGGTGGCGTGCCGCCTG 420
consensus_9594#2 ------------------------------------------------------------
consensus_9594#1 ------------------------------------------------------------
consensus_9594#0 CTCGTCGACCTGCTCGACCGGCTGCGCGCGCTCGGCGTGAAGCCCTCGCCGGAGGCGCGC 480
consensus_9594#2 ------------------------------------------------------------
consensus_9594#1 ------------------------------------------------------------
consensus_9594#0 GACGAGGCCAGGGCTATCGCGGCCGACTGGAAGCGGAGCAAGCGGATCGGGCCGCAGGCC 540
consensus_9594#2 ------------------------------------------------------------
consensus_9594#1 ------------------------------------------------------------
consensus_9594#0 GTGCTTAAGAAGGAGACGATCGCCTTCCTGCTCCTCGTGGGGGCGTTTGGGTTGGTGGAT 600
consensus_9594#2 ------------------------------------------------------------
consensus_9594#1 ------------------------------------------------------------
consensus_9594#0 GATGTCGGCGACGCGAGCGAGGTGCTCGATCTGGTCGTGTCGGTGTCTGGCCGGGAGCGC 660
consensus_9594#2 ------------------------------------------------------------
consensus_9594#1 ------------------------------------------------------------
consensus_9594#0 GCCGTTGAGGCTTTCGTCGGCCTTGGGCTCGATCTTGAGAAGCACATGCCAGTTTTCATT 720
consensus_9594#2 ------------------------------------------------------------
consensus_9594#1 ------------------------------------------------------------
consensus_9594#0 CATACAATGATAAAGAAAGGCAAACAGCTGGAGGCGGTTAAATTCATTCAAGCTCTTAAT 780
consensus_9594#2 ------------------------------------------------------------
consensus_9594#1 ------------------------------------------------------------
consensus_9594#0 TTGGTGGAAAAATATCCTTTATTGCCTGTTCTGAGGTCGTACATCAGTGATGCTGCAAAA 840
consensus_9594#2 ------------------------------------------------------------
consensus_9594#1 ------------------------------------------------------------
consensus_9594#0 GCTGGGAACATGATCCGCATCAGAGGAGATGATTCTGCTTGTCAGACTGAAGCCGATGCA 900
consensus_9594#2 ------------------------------------------------------------
consensus_9594#1 ------------------------------------------------------------
consensus_9594#0 AAAGAGCGCATGCTGCTCGGAGTATTGCAGAAGTTCATCAAAGACCAGAAGCTAGAAGAA 960
consensus_9594#2 ------------------------------------------------------------
consensus_9594#1 ------------------------------------------------------------
consensus_9594#0 CTACCTATTTTGGAAATAGTTAAACAGCGGCTGGCACATTTGGAGAAGAAAAGTGTGGAG 1020
consensus_9594#2 ------------------------------------------------------------
consensus_9594#1 ------------------------------------------------------------
consensus_9594#0 AGAAAGCGAGCAGCTAGTGCTGCTATTGAAGCAGCTCATGAAGTAAGTAAGAAGATTCAG 1080
consensus_9594#2 ------------------------------------------------------------
consensus_9594#1 ------------------------------------------------------------
consensus_9594#0 AAGCAAGAGAAGCAACAGCAGCAGGTGCAGTCAGCTATGCGATCACGGGTTCCAGGTAAA 1140
consensus_9594#2 ------------------------------------------------------------
consensus_9594#1 ------------------------------------------------------------
consensus_9594#0 GCAGCACAAAATTCCTTAAGCCAAAACATCCATTCGGTTGATTCCCTCAGTCGACCGCTC 1200
consensus_9594#2 ------------------------------------------------------------
consensus_9594#1 ------------------------------------------------------------
consensus_9594#0 ATGTCGAGCCAGAGCATGGGTATCTCAGGAGTATTAAATTTGTACCAAGCTGCTTCAAGC 1260
consensus_9594#2 ------------------------------------------------------------
consensus_9594#1 ------------------------------------------------------------
consensus_9594#0 CAGAATATAATTCCGGCTATTAGTCCGAGCCCACTGAGCCAACATCCCGTTGGCATCAAG 1320
consensus_9594#2 ------------------------------------------------------------
consensus_9594#1 ------------------------------------------------------------
consensus_9594#0 AATCAGACCCTGAATACACCGCCTGTTCAGACTCGGTATGGTGGCTTGGCTGACTACTAT 1380
consensus_9594#2 ------------------------------------------------------------
consensus_9594#1 ------------------------------------------------------------
consensus_9594#0 GGACTGTCCTCCGGCAGACCTAGGCCCGACTCTGTATCTCCTGGATCAAGTGTTACGAGT 1440
consensus_9594#2 ------------------------------------------------------------
consensus_9594#1 ------------------------------------------------------------
consensus_9594#0 GCACACACATCTTCCAGATCAAAGCTCTATTCTGCAGATCCCCTGGCTGCTGTCTCCCGA 1500
consensus_9594#2 ----------------------------------------------CTGCTGTCTCCCGA 14
consensus_9594#1 ------CCCCCGTCCTCGCCGNGCTCGCCTCGCTCCAGACCTACTCCTCCGCGCTCTCCG 54
** * *** *
consensus_9594#0 GCATCAGATAAGAAGGGTTCGTCTTACAACTATTCGTTGTCAAGTATG--TCGACATATA 1558
consensus_9594#2 GCATCAGATAAGAAGGGTTCGTCTTACAACTATNCGTTGTCAAGTATG--TCGACATATA 72
consensus_9594#1 NATTCACCTCCGCATGGCGGGCTCTCTACTCCGACGCCACCGCGCTCGACTCAACCCTCG 114
*** * * * ** * * * ** * * * ** **
consensus_9594#0 -ATCCTAATCCATAAATAACCTCGATATGGTTCTTATGCCCCCTCCCTCTGGGGGACTAA 1617
consensus_9594#2 -ANCCTAATCCATAAATAACCNCGATATGGTTCTTATGCCCCCTCCTTCTGGGGGACTAN 131
consensus_9594#1 CGTCCCGCCTCGAGGGCTTCTCCGAGCTCGACCTGNTGTGCTCCGCCATGGACGGGCCAG 174
** * * *** * * ** ** * * * * ** * *
consensus_9594#0 CATGTAAATTTTAGTTT---GAGGCCAAGCAGAGGCTGCTGATCCTGTGTAAATTCCAAA 1674
consensus_9594#2 CATGTAAATTTTAGTTT---GAGGCCAAGCAGAGGCTGCTGATCCTGTGTAAATTCCAAA 188
consensus_9594#1 GNCTCCGCGCGTACCTCACCGAGCACAGGGACGCGCTGNAGGACTCGTCCCTNANGNACC 234
** * *** ** * * **** * * ** *
consensus_9594#0 TATTCATATAGATTAATATAAATGCTTGGCTATATCATCCGTGGACTGTTAATTCTTGTG 1734
consensus_9594#2 TATTCATATAGATTAATATAAATGCTTGGCTAAAAAAAAAAAAAAAAAA----------- 237
consensus_9594#1 TNGACG-ANGNCCTNNTGGTGGNCCCCNACCNGGGNNGACTNGTGNTATCNGNGGCGGCG 293
* * * * * * *
consensus_9594#0 ACATTTGGACCNGGTCTAATGATATTTTGCTGGTTTTTAAAAA 1777
consensus_9594#2 -------------------------------------------
consensus_9594#1 AGNTTNTN----------------------------------- 301
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||