These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9671#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1360 fasta sequence [TCATCTTCGCTCTCGCTTTCCCGTGTAAGCCGGAGGAACGGGCGGCCGGCCTTCTCTCCCCGCGAGTCCGCGACCCCGCACGCGCGGCCGGCGAGCAAGCCCAGAGGCGCGTCGCCGAGCCCGACCTAGCATCCTCGGTTGGCGCGGCCTACTCGAGCGGCGCAGGGCCAGCGAGAGCTCAGGTTCGGAGGGGGGCTATGCGGGAGGCATCCTTCCACCGCCGACCTCCACCTCGGCCGGAATAGAACTGAAGGTCAGGAGTCAAGGTATATCAGATGATGGATCTGTCCACGACTTCAGTAGTGGCTGCTAAGGCCTACAAGTACAGAGCAGAATCACTTGTTAAGGACTACCTTCTTGCAGATTGTTATGTTTCATACACTGCTGTGCTTGGTGGGATCCTGATGTGCAAAATGGTCTATGACATCACACACTTAATCAGTTCATTGTACTACAAGGGTTATGGTTCTCTTACGAAAATCCAAAAGCTTGAGTGGAACAACAGGGGCATGTCCACTGTCCATGCAATGTTTATCACATTAATGTCAGTTTACCTAGTATTCTTCTCCAACCTATTCTCTGATGAGCTGGATGGCCCAGTAACAGTTCGGAGTTCAAACCTCTCCAATTTTACACTGGGGGTTTCTCTGGGGTACTTCATCGCTGACCTTGCTATGTTATCCTGGGCTTATCCTTCCCTTGGCGGAATGGAGTATGTTCTTCACCACTTGCTGTCAATTATTTCTTTAGTCTATGCTATTTATTCTGAAGAAGGACAGTTGTACACATACATGGTTCTCATCTCTGAAACAACCACACCTGGAATCAACCTCCGATGGTTTCTTGATACTGTTGGAATGAAAAGATCGAAAGCCTATCTTGTCAATGGTGTTACAATGTTTGTTGCATGGCTGGTGGCAAGGATAATTTTGTTCATCTACTTGTTTTACCACATATACTTTCACATTGATCAGGTTAAGCAGATGCGCACCTTTAGCTGCATTCTGATATTCGCTGTGCCCACAATACTATTAGTGATGAACACAGTGTGGTTTGTCAAAATCTTGAGAGGTCTCAAGAAGACGCTAGCCAAGAGGCAGTGAAGAGTGGTGAATTGCTCATAGGCGCATCTACAACCATCCTTTCGTACAGTCACATACAACTACATATATTTTCTACGTTAAGCTTTATAGTGCAACTCATAGCGCAAGCAAAAGATCCCTTGTACACATGTTGGAAAAATCTCCTCAACATTGCCGAAAATTTTTGTCCCTGTACGGTTCTACATTGTACATATATATATATGCACGTCTAGTTATGGCTGAGGATGCTTTTATCTGTGCACTAATGATTCATAGTT] [+] EMBL AK103291 [TCATCTTCGCTCTCGCTTTCCCGTGTAAGCCGGAGGAACGGGCGGCCGGCCTTCTCTCCCCGCGAGTCCGCGACCCCGCACGCGCGGCCGGCGAGCAAGCCCAGAGGCGCGTCGCCGAGCCCGACCTAGCATCCTCGGTTGGCGCGGCCTACTCGAGCGGCGCAGGGCCAGCGAGAGCTCAGGTTCGGAGGGGGGCTATGCGGGAGGCATCCTTCCACCGCCGACCTCCACCTCGGCCGGAATAGAACTGA AGGAGTCAAGGTATATCAGATGATGGATCTGTCCACGACTTCAGTAGTGGCTGCTAAGGCCTACAAGTACAGAGCAGAATCACTTGTTAAGGACTACCTTCTTGCAGATTGTTATGTTTCATACACTGCTGTGCTTGGTGGGATCCTGATGTGCAAAATGGTCTATGACATCACACACTTAATCAGTTCATTGTACTACAAGGGTTATGGTTCTCTTACGAAAATCCAAAAGCTTGAGTGGAACAACAGGGGCATGTCCACTGTCCATGCAATGTTTATCACATTAATGTCAGTTTACCTAGTATTCTTCTCCAACCTATTCTCTGATGAGCTGGATGGCCCAGTAACAGTTCGGAGTTCAAACCTCTCCAATTTTACACTGGGGGTTTCTCTGGGGTACTTCATCGCTGACCTTGCTATGTTATCCTGGGCTTATCCTTCCCTTGGCGGAATGGAGTATGTTCTTCACCACTTGCTGTCAATTATTTCTTTAGTCTATGCTATTTATTCTGAAGAAGGACAGTTGTACACATACATGGTTCTCATCTCTGAAACAACCACACCTGGAATCAACCTCCGATGGTTTCTTGATACTGTTGGAATGAAAAGATCGAAAGCCTATCTTGTCAATGGTGTTACAATGTTTGTTGCATGGCTGGTGGCAAGGATAATTTTGTTCATCTACTTGTTTTACCACATATACTTTCACATTGATCAGGTTAAGCAGATGCGCACCTTTAGCTGCATTCTGATATTCGCTGTGCCCACAATACTATTAGTGATGAACACAGTGTGGTTTGTCAAAATCTTGAGAGGTCTCAAGAAGACGCTAGCCAAGAGGCAGTGAAGAGTGGTGAATTGCTCATAGGCGCATCTACAACCATCCTTTCGTACAGTCACATACAACTACATATATTTTCTACGTTAAGCTTTATAGTGCAACTCATAGCGCAAGCAAAAGATCCCTTGTACACATGTTGGAAAAATCTCCTCAACATTGCCGAAAATTTTTGTCCCTGTACGGTTCTACATTGTACATATATATATATGCACGTCTAGTT ] [+] EMBL CB656706 [ ACGGGCGGCCGGCCTTCTCTCCCCGCGAGTCCGCGACCCCGCACGCGCGGCCGGCGAGCAAGCCCAGAGGCGCGTCGCCGAGCCCGACCTAGCATCCTCGGTTGGCGCGGCCTACTCGAGCGGCGCAGGGCCAGCGAGAGCTCAGGTTCGGAGGGGGGCTATGCGGGAGGCATCCTTCCACCGCCGACCTCCACCTCGGCCGGAATAGAACTGAAGGTCAGGAGTCAAGGTATATCAGATGATGGATCTGTCCACGACTTCAGTAGTGGCTGCTAAGGCCTACAAGTACAGAGCAGAATCACTTGTTAAGGACTACCTTCTTGCAGATTGTTATGTTTCATACACTGCTGTGCTTGGTGGGATCCTGATGTGCAAAATGGTCTATGACATCACACACTTAATCAGTTCATTGTACTACAAGGGTTATGGTTCTCTTACGAAAATCCAAAAGCTTGAGTGGAACAACAGGGGCATGTCCACTGTCCATGCAATGTTTATCACATTAATGTCAGTTTACCTAGTATTCTTCTCCAACCTATTCTCTGATGAGCTGGATGGCCCAGTAACAGTTCGGAGTTCAAACCTCTCCAATTTTACACTGGGGGTTTCTCTGGGGTACTTCATCGCTGACCTTGCTATGTTATCCTGGGCTTATCCTTCCCTTGGCGGAATGGAGTATGTTCTTCACCACTTGCTGTCAATTATTTCTTTAGTCTATGCTATTTATTCTGAAGAAGGACAGTTGTACACATACATGGTTCTCATCTCTGAAACAACCACACCTGGGATCAACCTCCGATGGTTTC ] [+] EMBL AU222866 [ GCGACCCCGCACGCGCGGCCGGCGAGCAAGCCCAGAGGCGCGTCGCCGAGCCCGACCTAGCATCCTCGGTTGGCGCGGCCTACTCGAGCGGCGCAGGGCCAGCGAGAGCTCAGGTTCGGAGGGGGGCTATGCGGGAGGCATCCTTCCACCGCCGACCTCCACCTCGGNCGGAATAGAACTGAAGGTCAGGAGTCAAGGTATATCAGATGATGGATCTGTCCACGACTTCAGTAGTGGCTGCTAAGGCCTACAANTACAGAGCAGAATCACTTGTTAANGACTACCTTCTTGCANATTGTTATGTTTCATACACTGCTGTGCTTGGTGGGATNCTGATGTGCAAAATGGTCTATGACATCA ] [-] EMBL CB656707 [ AGTTTACCTAGTATTCTTCTCCAACCTATTCTCTGATGAGCTGGATGGCCCAGTAACAGTTCGGAGTTCAAACCTCTCCAATTTTACACTGGGGGTTTCTCTGGGGTACTTCATCGCTGACCTTGCTATGTTATCCTGGGCTTATCCTTCCCTTGGCGGAATGGAGTATGTTCTTCACCACTTGCTGTCAATTATTTCTTTAGTCTATGCTATTTATTCTGAAGAAGGACAGTTGTACACATACATGGTTCTCATCTCTGAAACAACCACACCTGGAATCAACCTCCGATGGTTTCTTGATACTGTTGGAATGAAAAGATCGAAAGCCTATCTTGTCAATGGTGTTACAATGTTTGTTGCATGGCTGGTGGCAAGGATAATTTTGTTCATCTACTTGTTTTACCACATATACTTTCACATTGATCAGGTTAAGCAGATGCGCACCTTTAGCTGCATTCTGATATTCGCTGTGCCCACAATACTATTAGTGATGAACACAGTGTGGTTTGTCAAAATCTTGAGAGGTCTCAAGAAGACGCTAGCCAAGAGGCAGTGAAGAGTGGTGAATTGCTCATAGGCGCATCTACAACCATCCTTTCGTACAGTCACATACAACTACATATATTTTCTACGTTAAGCTTTATAGTGCAACTCATAGCGCAAGCAAAAGATCCCTTGTACACATGTTGGAAAAATCTCCTCAACATTGCCGAAAATTTTTGTCCCTGTACGGTTCTACATTGTACATATATATATATGCACGTCTAGTTATGGCTGAGGATGCTTTTATCTGTGCACTAATGATTCATAGTT] [+] EMBL AU225100 [ gccgctTGGGGTACTTCATCGCTGACCTTGCTATGTTATCCTGGGCTTATCCTTCCCTTGGCGGAATGGAGTATGTTCTTCACCACTTGCTGTCAATTATTTCTTTAGTCTATGCTATTTATTCTGAAGAAGGACAGTTGTACACATACATGGTTCTCATCTCTGAAACAACCACACCTGGAATCAACCTCCGATGGTTTCTTGATACTGTTGGAATGAAAAGATCGAAAGCCTATCTTGTCAATGGTGTTACAATGTTTGTTGCATGGCTGGTGGCAAGGATAATTTTGTTCATCTACTTGTTTTAC ] consensusID : consensus_9671#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 145 fasta sequence [GTACAGTCACATACAACTACATATATTTTCTACGTTAAGCTTTATAGTGCAACTCATAGCGCAAGCAAAAGATCCCTTGTACACATGTTGGAAAAATCTCCTCAACATTGCCGAAAATTTTTGTCACAAAAAAAAAAAAAAAAAA] [+] EMBL CA765862 [GTACAGTCACATACAACTACATATATTTTCTACGTTAAGCTTTATAGTGCAACTCATAGCGCAAGCAAAAGATCCCTTGTACACATGTTGGAAAAATCTCCTCAACATTGCCGAAAATTTTTGTCACAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9671#0 TCATCTTCGCTCTCGCTTTCCCGTGTAAGCCGGAGGAACGGGCGGCCGGCCTTCTCTCCC 60 consensus_9671#1 ------------------------------------------------------------ consensus_9671#0 CGCGAGTCCGCGACCCCGCACGCGCGGCCGGCGAGCAAGCCCAGAGGCGCGTCGCCGAGC 120 consensus_9671#1 ------------------------------------------------------------ consensus_9671#0 CCGACCTAGCATCCTCGGTTGGCGCGGCCTACTCGAGCGGCGCAGGGCCAGCGAGAGCTC 180 consensus_9671#1 ------------------------------------------------------------ consensus_9671#0 AGGTTCGGAGGGGGGCTATGCGGGAGGCATCCTTCCACCGCCGACCTCCACCTCGGCCGG 240 consensus_9671#1 ------------------------------------------------------------ consensus_9671#0 AATAGAACTGAAGGTCAGGAGTCAAGGTATATCAGATGATGGATCTGTCCACGACTTCAG 300 consensus_9671#1 ------------------------------------------------------------ consensus_9671#0 TAGTGGCTGCTAAGGCCTACAAGTACAGAGCAGAATCACTTGTTAAGGACTACCTTCTTG 360 consensus_9671#1 ------------------------------------------------------------ consensus_9671#0 CAGATTGTTATGTTTCATACACTGCTGTGCTTGGTGGGATCCTGATGTGCAAAATGGTCT 420 consensus_9671#1 ------------------------------------------------------------ consensus_9671#0 ATGACATCACACACTTAATCAGTTCATTGTACTACAAGGGTTATGGTTCTCTTACGAAAA 480 consensus_9671#1 ------------------------------------------------------------ consensus_9671#0 TCCAAAAGCTTGAGTGGAACAACAGGGGCATGTCCACTGTCCATGCAATGTTTATCACAT 540 consensus_9671#1 ------------------------------------------------------------ consensus_9671#0 TAATGTCAGTTTACCTAGTATTCTTCTCCAACCTATTCTCTGATGAGCTGGATGGCCCAG 600 consensus_9671#1 ------------------------------------------------------------ consensus_9671#0 TAACAGTTCGGAGTTCAAACCTCTCCAATTTTACACTGGGGGTTTCTCTGGGGTACTTCA 660 consensus_9671#1 ------------------------------------------------------------ consensus_9671#0 TCGCTGACCTTGCTATGTTATCCTGGGCTTATCCTTCCCTTGGCGGAATGGAGTATGTTC 720 consensus_9671#1 ------------------------------------------------------------ consensus_9671#0 TTCACCACTTGCTGTCAATTATTTCTTTAGTCTATGCTATTTATTCTGAAGAAGGACAGT 780 consensus_9671#1 ------------------------------------------------------------ consensus_9671#0 TGTACACATACATGGTTCTCATCTCTGAAACAACCACACCTGGAATCAACCTCCGATGGT 840 consensus_9671#1 ------------------------------------------------------------ consensus_9671#0 TTCTTGATACTGTTGGAATGAAAAGATCGAAAGCCTATCTTGTCAATGGTGTTACAATGT 900 consensus_9671#1 ------------------------------------------------------------ consensus_9671#0 TTGTTGCATGGCTGGTGGCAAGGATAATTTTGTTCATCTACTTGTTTTACCACATATACT 960 consensus_9671#1 ------------------------------------------------------------ consensus_9671#0 TTCACATTGATCAGGTTAAGCAGATGCGCACCTTTAGCTGCATTCTGATATTCGCTGTGC 1020 consensus_9671#1 ------------------------------------------------------------ consensus_9671#0 CCACAATACTATTAGTGATGAACACAGTGTGGTTTGTCAAAATCTTGAGAGGTCTCAAGA 1080 consensus_9671#1 ------------------------------------------------------------ consensus_9671#0 AGACGCTAGCCAAGAGGCAGTGAAGAGTGGTGAATTGCTCATAGGCGCATCTACAACCAT 1140 consensus_9671#1 ------------------------------------------------------------ consensus_9671#0 CCTTTCGTACAGTCACATACAACTACATATATTTTCTACGTTAAGCTTTATAGTGCAACT 1200 consensus_9671#1 ------GTACAGTCACATACAACTACATATATTTTCTACGTTAAGCTTTATAGTGCAACT 54 ****************************************************** consensus_9671#0 CATAGCGCAAGCAAAAGATCCCTTGTACACATGTTGGAAAAATCTCCTCAACATTGCCGA 1260 consensus_9671#1 CATAGCGCAAGCAAAAGATCCCTTGTACACATGTTGGAAAAATCTCCTCAACATTGCCGA 114 ************************************************************ consensus_9671#0 AAATTTTTGTCCCTGTACGGTTCTACATTGTACATATATATATATGCACGTCTAGTTATG 1320 consensus_9671#1 AAATTTTTGTCACAAAAAAAAAAAAAAAAAA----------------------------- 145 *********** * * * * consensus_9671#0 GCTGAGGATGCTTTTATCTGTGCACTAATGATTCATAGTT 1360 consensus_9671#1 ---------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||