These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9679#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 676 fasta sequence [GATACGCTACGTAACGGCATGACATTGTTTTTTTTTTTTTTTTTTAGTAAGTATGCCACACTGAGCCCGCGATAATATATATACTTCTTTCGATATTTATACAATGTTTATCGTACCAGAAGCGACGGTGCCGAAGCACCAATACCATGTTTTTGACCACCTCTAGTACTAACCTATTTTTTAATATCAATATTGTAGTACGTACACTTTAGACAAACAC-ATATTTTTTTACTCTTCATCTAACGGGTACTGTGTTAATTAGTTGAGCGGTGGTTGAACACCGT-AACAAAGGGGAAGTCAGGTTCAGGTCTAATCATCAGTTCGGAATAATCTTGAAGCGAGGCTTGGAGAAGGCTGGAGATGGGTCATAGCGCCCGTAGTCGTTTGTCTTAACCATAAGGTTCCTTGGATGTACTTCGCCTGACGATGTCGCTCCCTCTCCGAGTGCAGCACTAGAATATTTCTTTTGATTCGTTTCTTGCGCTACCAGCTCCCTTCCTCCTGCAGTAAAAACTGAAAGCGCCGACGCTACGATGAGCAGTATAACGAAAACCGAAGCTCTATTAACTCTCCTGGAGCTCATCTTTCTACTTAATTTCTTTCCCTCTCTAGTCCTTCTAGTTCCTGATGATCAACAGGCTGCCACTCTCATCAACTCTGCCGACAAGGCACTGAA] [+] EMBL CF279561 [GATACGCTACGTAACGGCATGACATTGTTTTTTTTTTTTTTTTTTAGTAAGTATGCCACACTGAGCCCGCGATAATATATATACTTCTTTCGATATTTATACAATGTTTATCGTACCAGAAGCGACGGTGCCGAAGCACCAATACCATGTTTTTGACCACCTCTAGTACTAACCTATTTTTTAATATCAATATTGTAGTACGTACACTTTAGACAAACAC ATATTTTTTTACTCTTCATCTAACGGGTACTGTGTTAATTAGTTGAGCGGTGGTTGAACACCGT AACAAAGGGGAAGTCAGGTTCAGGTCTAATCATCAGTTCGGAATAATCTTGAAGCGAGGCTTGGAGAAGGCTGGAGATGGGTCATAGCGCCCGTAGTCGTTTGTCTTAACCATAAGGTTCCTTGGATGTACTTCGCCTGACGATGTCGCTCCCTCTCCGAGTGCAGCACTAGAATATTTCTTTTGATTCGTTTCTTGCGCTACCAGCTCCCTTCCTCCTGCAGTAAAAACTGAAAGCGCCGACGCTACGATGAGCAGTATAACGAAAACCGAAGCTCTATTAACTCTCCTGGAGCTCATCTTTCTACTTAATTTCTTTCCCTCTCTAGTCCTTCTAGTTCCTGATGA ] [-] EMBL CF279560 [ tcTAATATCAATATTGTAGTACGTACACTTTAGACAAACACNATATAGCATTACTCTTCATCTAACGGGTACTGTGTTAATTAGTTGAGCGGTGGTTGAACACCGTNAACAAAGGGGAAGTCAGGTTCAGGTCTAATCATCAGTTCGGAATAATCTTGAAGCGAGGCTTGGAGAAGGCTGGAGATGGGTCATAGCGCCCGTAGTCGTTTGTCTTAACCATAAGGTTCCTTGGATGTACTTCGCCTGACGATGTCGCTCCCTCTCCGAGTGCAGCACTAGAATATTTCTTTTGATTCGTTTCTTGCGCTACCAGCTCCCTTCCTCCTGCAGTAAAAACTGAAAGCGCCGACGCTACGATGAGCAGTATAACGAAAACCGAAGCTCTATTAACTCTCCTGGAGCTCATCTTTCTACTTAATTTCTTTCCCTCTCTAGTCCTTCTAGTTCCTGATGATCAACAGGCTGCCACTCTCATCAACTCTGCCGACAAGGCACTGAA] consensusID : consensus_9679#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 593 fasta sequence [TGCCACACTGAGCCCGCGATAATATATATACTTCTTTCGATATTTATACAATGTTTATCGTACCAGAAGCGACGGTGCCGAAGCACC--AATACCATGTTTTTGACCACCTCTAGTACTAGCCTATTTTCTAATAT-CAATATTGTAGTACGTACACTTTAGACAAACACATATAGCATTACTCTTCATCTAACGGGTACTGTGTTAATTGGTTGAGCGGTGGTTGAACACCGTAACAAAGGGGAAGTCAGGTTCAGGTCTAATCATCAGTTCGGAATAATCTTGAAGCGAGGCTTGGAGAAGGCTGGAGATGGGTCATAGCGCCCGTAGTCGTTTGTCTTAACCATAAGGTTCCTTGGATGTGCTTCGCCTGACGATGTCGCTCCCTCTCCGAGTGCAGCACTAGAATATTTCTGAATTATGACATGATAGTTAATCATACATTAATTCTTTTGCTATACCACATCTTTTGTTTTAGTGCGTCTCCGGAACTTTTTATAATTCAAAATTTAATTAATCAATGATGAACTCGTTTGAACATTCTTCTTCTTCGTGATTTGTTTATGGACAGCTAATTACTACTTTCGAATTCCATC] [-] EMBL CB096352 [TGCCACACTGAGCCCGCGATAATATATATACTTCTTTCGATATTTATACAATGTTTATCGTACCAGAAGCGACGGTGCCGAAGCACC AATACCATGTTTTTGACCACCTCTAGTACTAGCCTATTTTCTAATAT CAATATTGTAGTACGTACACTTTAGACAAACACATATAGCATTACTCTTCATCTAACGGGTACTGTGTTAATTGGTTGAGCGGTGGTTGAACACCGTAACAAAGGGGAAGTCAGGTTCAGGTCTAATCATCAGTTCGGAATAATCTTGAAGCGAGGCTTGGAGAAGGCTGGAGATGGGTCATAGCGCCCGTAGTCGTTTGTCTTAACCATAAGGTTCCTTGGATGTGCTTCGCCTGACGATGTCGCTCCCTCTCCGAGTGCAGCACTAGAATATTTCTGAATTATGACATGATAGTTAATCATACATTAATTCTTTTGCTATACCACATCTTTTGTTTTAGTGCGTCTCCGGAACTTTTTATAATTCAAAATTTAATTAATCAATGATGAACTCGTTTGAACATTCTTCTTCTTCGTGATTTGTTTATGGACAGCTAATTACTACTTTCGAATTCCATC] [-] EMBL OSR03911A [ AGAACCGACGGTGCCGAAGCACCCAAATNCCATGTTTTTGCCCACCTCTAGTACTAACCTATTCTCTAATATCCAATATTGTAGCACGTACACTTTAGACAAACACATATAGCATTACTCTTCATCTAACGGGTACTGTGTTAATTAGTTGAGCGGTGGTTGAACACCGTAACAAAGGGGAAGTCAGGTTCAGGTCTAATCATCAGTTCGGAATAATCTTGAAGCGAGGCTTGGAGAAGGCTGGAGATGGGTCATAGCGCCCGTAGTCGTTTGTCTTAACCATAAGGTTCCTTGGATGTACTTCGCCTGACGATGTCGCTCCCTCTCCGAGTGCAGCACTAGAATATTTCTGAATTATGACATGATAGTTAATCATACATTAATTCTTTTGCTATACCACATCTTTTGTTTTAGTGCGTCTCCGGAACTTTTTATAATTCAAAATT ] consensusID : consensus_9679#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 577 fasta sequence [NTGAANNNNGTNNNNNNNNNNNAGTCAGGTTCAGGTCTAATCATCAGTTCGGAATAATCTTGAAGCGAGGCTTGGAGAAGGCTGGAGATGGGTCATAGCGCCCGTAGTCGTTTGTCTTAACCATAAGGTTCCTTGGATGTACTTCGCCTGACGATGTCGCTCCCTCTCCGAGTGCAGCACTAGAATATTTCTGAATTATGACATGATAGTTAATCATACATTAATTCTTTTGCTATACCACATCTTTTGTTTTAGTGCGTCTCCGGAACTTTTTATAATTCAAAATTTAATTAATCAATGATGAACTCGTTTGAACATTCTTCTTCTTCGTGATTTGTTTATGGACAGCTAATTACTACTTTCGAATTCCATCTGTATATACCTTTTGATTCGTTTCTTGCGCTACCAGCTCCCTTCCTCCTGCAGTAAAAACTGAAAGCGCCGACGCTACGATGAGCAGTATAACGAAAACCGAAGCTCTATTAACTCTCCTGGAGCTCATCTTTCTACTTAATTTCTTTCCCTCTCTAGTCCTTCTAGTTCCTGATGATCAACAGGCTGCCACTCTCATCAACTC] [-] EMBL CF196757 [NTGAANNNNGTNNNNNNNNNNNAGTCAGGTTCAGGTCTAATCATCAGTTCGGAATAATCTTGAAGCGAGGCTTGGAGAAGGCTGGAGATGGGTCATAGCGCCCGTAGTCGTTTGTCTTAACCATAAGGTTCCTTGGATGTACTTCGCCTGACGATGTCGCTCCCTCTCCGAGTGCAGCACTAGAATATTTCTGAATTATGACATGATAGTTAATCATACATTAATTCTTTTGCTATACCACATCTTTTGTTTTAGTGCGTCTCCGGAACTTTTTATAATTCAAAATTTAATTAATCAATGATGAACTCGTTTGAACATTCTTCTTCTTCGTGATTTGTTTATGGACAGCTAATTACTACTTTCGAATTCCATCTGTATATACCTTTTGATTCGTTTCTTGCGCTACCAGCTCCCTTCCTCCTGCAGTAAAAACTGAAAGCGCCGACGCTACGATGAGCAGTATAACGAAAACCGAAGCTCTATTAACTCTCCTGGAGCTCATCTTTCTACTTAATTTCTTTCCCTCTCTAGTCCTTCTAGTTCCTGATGATCAACAGGCTGCCACTCTCATCAACTC] consensusID : consensus_9679#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 478 fasta sequence [GATAATATATATACTTCTTTCGATATTTATACAATGTTTATCGTACCAGAAGCGACGGTGCCGAAGCACCAATACCATGTTTTTGACCACCTCTAGTACTAGCCTATTTTCTAATATCAATATTGTAGTACGTACACTTTAGACAAACACATATAGCATTACTCTTCATCTAACGGGTACTGTGTTAATTGGTTGAGCGGTGGTTGAACACCGTAACAAAGGGGAAGTCAGGTTCAGGTCTAATCATCAGTTCGGAATAATCTTGAAGCGAGGCTTGGAGAAGGCTGGAGATGGGTCATAGCGCCCGTAGTCGTTTGTCTTAACCATAAGGTTCCTTGGATGTGCTTCGCCTGACGATGTCGCTCCCTCTCCGAGTGCAGCACTAGAATATTTCTTTTGATTAGTTTCTTGCGCTACCAGCTCCCTTCCTCCTGCAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAAAAAA] [+] EMBL BE040296 [GATAATATATATACTTCTTTCGATATTTATACAATGTTTATCGTACCAGAAGCGACGGTGCCGAAGCACCAATACCATGTTTTTGACCACCTCTAGTACTAGCCTATTTTCTAATATCAATATTGTAGTACGTACACTTTAGACAAACACATATAGCATTACTCTTCATCTAACGGGTACTGTGTTAATTGGTTGAGCGGTGGTTGAACACCGTAACAAAGGGGAAGTCAGGTTCAGGTCTAATCATCAGTTCGGAATAATCTTGAAGCGAGGCTTGGAGAAGGCTGGAGATGGGTCATAGCGCCCGTAGTCGTTTGTCTTAACCATAAGGTTCCTTGGATGTGCTTCGCCTGACGATGTCGCTCCCTCTCCGAGTGCAGCACTAGAATATTTCTTTTGATTAGTTTCTTGCGCTACCAGCTCCCTTCCTCCTGCAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9679#0 GATACGCTACGTAACGGCATGACATTGTTTTTTTTTTTTTTTTTTAGTAAGTATGCCACA 60 consensus_9679#3 ------------------------------------------------------------ consensus_9679#1 -----------------------------------------------------TGCCACA 7 consensus_9679#2 ------------------------------------------------------------ consensus_9679#0 CTGAGCCCGCGATAATATATATACTTCTTTCGATATTTATACAATGTTTATCGTACCAGA 120 consensus_9679#3 ----------GATAATATATATACTTCTTTCGATATTTATACAATGTTTATCGTACCAGA 50 consensus_9679#1 CTGAGCCCGCGATAATATATATACTTCTTTCGATATTTATACAATGTTTATCGTACCAGA 67 consensus_9679#2 -----------NTGAANNNNGTNNNNNNNNNNNAGTCAGGTTCAGGTCTAATCATCAGTT 49 * * * * * ** ** * consensus_9679#0 AGCGACGGTGCCGAAGCA---CCAATACCATGTTTTTGACCACCTCTAGTACTAACCTAT 177 consensus_9679#3 AGCGACGGTGCCGAAGCA---CCAATACCATGTTTTTGACCACCTCTAGTACTAGCCTAT 107 consensus_9679#1 AGCGACGGTGCCGAAGCA---CCAATACCATGTTTTTGACCACCTCTAGTACTAGCCTAT 124 consensus_9679#2 CGGAATAATCTTGAAGCGAGGCTTGGAGAAGGCTGGAGATGGGTCATAGCGCC--CGTAG 107 * * * ***** * * * * * ** *** * * ** consensus_9679#0 TTTTTAATATCAATATTGTAGTACGTACACTTTAGACAAACACATATTTTTTTACTCTTC 237 consensus_9679#3 TTTCTAATATCAATATTGTAGTACGTACACTTTAGACAAACACATATAGCATTACTCTTC 167 consensus_9679#1 TTTCTAATATCAATATTGTAGTACGTACACTTTAGACAAACACATATAGCATTACTCTTC 184 consensus_9679#2 TCGTTTGTCTTAACCATAAGGTTCCTTGGATGTACTTCGCCTGACG--ATGTCGCTCCCT 165 * * * * ** * ** * * * ** * * * *** consensus_9679#0 ATCTAACGGGTACTGTGTTAATTAGTTGAGCGGTGGTTGAACACCGTAACAAAGGGGAAG 297 consensus_9679#3 ATCTAACGGGTACTGTGTTAATTGGTTGAGCGGTGGTTGAACACCGTAACAAAGGGGAAG 227 consensus_9679#1 ATCTAACGGGTACTGTGTTAATTGGTTGAGCGGTGGTTGAACACCGTAACAAAGGGGAAG 244 consensus_9679#2 CTCCGAGTGCAGCACTAGAATATTTCTGAATTATGACATGATAGTTAATCATACATTAAT 225 ** * * * * * * *** ** * * * ** * ** consensus_9679#0 TCAGGTTCAGGTCTA-ATCATCAGTTCGGAATAATCTTGAAGCGAGGCTTGGAGAAGGCT 356 consensus_9679#3 TCAGGTTCAGGTCTA-ATCATCAGTTCGGAATAATCTTGAAGCGAGGCTTGGAGAAGGCT 286 consensus_9679#1 TCAGGTTCAGGTCTA-ATCATCAGTTCGGAATAATCTTGAAGCGAGGCTTGGAGAAGGCT 303 consensus_9679#2 TCTTTTGCTATACCACATCTTTTGTTTTAGTGCGTCTC----CGGAACTTTTTATAATTC 281 ** * * * * *** * *** *** ** *** * consensus_9679#0 GGAGATGGGTCATAGCGCCCGTAGTCGTTTGTCTTAACCATAAGGTTCCTTGGATGTACT 416 consensus_9679#3 GGAGATGGGTCATAGCGCCCGTAGTCGTTTGTCTTAACCATAAGGTTCCTTGGATGTGCT 346 consensus_9679#1 GGAGATGGGTCATAGCGCCCGTAGTCGTTTGTCTTAACCATAAGGTTCCTTGGATGTGCT 363 consensus_9679#2 AAAATTTAATTA----ATCAATGATGAACTCGTTTGAACATTCTTCTTCTTCGTGATTTG 337 * * * * * * * * ** * *** * *** * * consensus_9679#0 TCGCCTGACGATGTCGCTCCCTCTCCGAGTGCAGCACTAGAATATTTCT----TTTGAT- 471 consensus_9679#3 TCGCCTGACGATGTCGCTCCCTCTCCGAGTGCAGCACTAGAATATTTCT----TTTGAT- 401 consensus_9679#1 TCGCCTGACGATGTCGCTCCCTCTCCGAGTGCAGCACTAGAATATTTCTGAATTATGACA 423 consensus_9679#2 TTTATGGACAGCTAATTACTACTTTCGAATTC--CATCTGTATATACCT----TTTGAT- 390 * *** * * *** * * ** * **** ** * *** consensus_9679#0 ---TCGTTTCTTGCGCTACCAGCTCCCTTCCTCCTGCAG---TAAAAACTGAAAGCGCCG 525 consensus_9679#3 ---TAGTTTCTTGCGCTACCAGCTCCCTTCCTCCTGCAG---TAAAAAAAAAAAAAAAAA 455 consensus_9679#1 TGATAGTTAATCATAC-ATTAATTCTTTTGCTATACCACATCTTTTGTTTTAGTGCGTCT 482 consensus_9679#2 ---TCGTTTCTTGCGCTACCAGCTCCCTTCCTCCTGCAG---TAAAAACTGAAAGCGCCG 444 * *** * * * * ** ** ** ** * * consensus_9679#0 ACGCTACGATGAGCAGTATAACGAAAACCGAAGCTCTATTAACTCTCCTGGAGCTCATCT 585 consensus_9679#3 AAAAAAAAAAAAAAAGGAAAAAA------------------------------------- 478 consensus_9679#1 CCGGAACTTTTTATAATTCAAAATTTAATTAATCAATGATGAACTCGTTTGAACATTCTT 542 consensus_9679#2 ACGCTACGATGAGCAGTATAACGAAAACCGAAGCTCTATTAACTCTCCTGGAGCTCATCT 504 * * ** consensus_9679#0 TTCTACTTAATTTCTTTCCCTCTCTAGTCCTTCTAGTTCCTGATGATCAACAGGCTGCCA 645 consensus_9679#3 ------------------------------------------------------------ consensus_9679#1 CTTCTTCGTGATTTGTTTATGGACAGCTAATTACTACTTTCGAATTCCATC--------- 593 consensus_9679#2 TTCTACTTAATTTCTTTCCCTCTCTAGTCCTTCTAGTTCCTGATGATCAACAGGCTGCCA 564 consensus_9679#0 CTCTCATCAACTCTGCCGACAAGGCACTGAA 676 consensus_9679#3 ------------------------------- consensus_9679#1 ------------------------------- consensus_9679#2 CTCTCATCAACTC------------------ 577 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||