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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9977#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1400 fasta sequence
[CACACGCAGAAGAAGAGAGAGAAAGAGAGAGAGAGAGAAGGCCCAAACACCACCAAACCCTAGCCCTCACCTCGCCCCGCCGTCCATGGAGGCGGCGCTGTGACCCGCCGCCGCCGCCGCCGTCGTCGTCGTCGTGGCGTGCGGAACCGATAGGGCGGAGGGGATGACCGCCAGATCGGGCGACCCCGGCGTCTCGCCGGAGTCGTCGTCTGCGGCGGCGGCGGCGGCGGGGTCCGGGGGCGGGGAGATCTGGGGGACGTCGGAGGACCTGCTCCTGGCGTGCGCCGTGAGCCGCCATGGGACGGCGAGCTGGGACGCGGTGGCGAAGGAGATGCAGTCGAGGTGCCCTTCCGCCGCCGTGTTCACCCCCACCACCTGCCGCCTCCGGTTCCGCGTCCTCCACCGCCGGTTCTCCGGCGGCGTCACCGCCGAGAACGAGGACGCCGACGGCGGCGAGGAGGAGGAAGAGGCCGACGCCGCCGCCGTCGCCGGCTGGGTGGAGGAACTCCGCGAGCTGCGCGTCGCCGAGCTCCGCCGCGAGGTCGAGAAATACGATCTCTCGATCGGGTCGTTGCAATCAAAAGTGAAACGGCTCAAGGAGGAGAGGGAAAAGAGCATCTCCGGCGAGACGAAGCCGCCGCCGGCGGCGGCGGC-GGTGAAGGAGGAGGAGGAGGATGTACGGAAGGGATCACCGGAGGAGGCCGGCGCCGTGGAGGACAGGGTCTCCGGCCACGAATCCGGCCGGTCATGCAAGGAGTCGAACTCGTCAGATCTGAAGCGGCCGGAGAACGACCCCGCGGTCGCCGACGACGACGACCGGGAGGCGGAGGAGGAGGAGGAGGCGGCGGCGGCGCCCGCGGCCGGCGACATCGCCGTGAAGGAGGAGGCG-TCGGGCGAGTCGGTGGCTGGGTCGAAGGAGGCGGACGTCGAGAAGGAGAGCAGCGACGTGCAGAGCTCCGCCAGCCCGTCCCGCCGCCGGCGACGGAAGGGCGGAGGCGGCGGCGAATAGGCGGAGGCGGCGTCGCCGTCGGTGTCCGTGCCCCTCCCCGCCGCCGAGGCCGAGCCGCTCGTCGCCTTCCTCGAGTCGGTCCGGACCAGCAAGGCCGGCGCCGTGTTCGAGCGGCGGCTCGATAGCCAGGATGGGGAGAGGTACAGTGGCACGATCAGGCGCCATGTGGACCTGGAGACGGTCAGGTCGAGGCTGGTGGGTGCAACGGCGGCGGCGGCGGCGGCGGCGTGCTACGCGTCGGCGTCCGAGTTCTACCGCGACATGATGCTGCTCTGCGCCAACGCGCTCGTCTTCTTCCCGCGCGGCTCGCCGGAGCACGCCGCCGCGCTCCAGCTGCGCGCGCTCGTCTCCAAGCAGGTCTCCAAGGACCGGCAGCCTCACGCCTGGGCGA]
[+] EMBL AK101254 [CACACGCAGAAGAAGAGAGAGAAAGAGAGAGAGAGAGAAGGCCCAAACACCACCAAACCCTAGCCCTCACCTCGCCCCGCCGTCCATGGAGGCGGCGCTGTGACCCGCCGCCGCCGCCGCCGTCGTCGTCGTCGTGGCGTGCGGAACCGATAGGGCGGAGGGGATGACCGCCAGATCGGGCGACCCCGGCGTCTCGCCGGAGTCGTCGTCTGCGGCGGCGGCGGCGGCGGGGTCCGGGGGCGGGGAGATCTGGGGGACGTCGGAGGACCTGCTCCTGGCGTGCGCCGTGAGCCGCCATGGGACGGCGAGCTGGGACGCGGTGGCGAAGGAGATGCAGTCGAGGTGCCCTTCCGCCGCCGTGTTCACCCCCACCACCTGCCGCCTCCGGTTCCGCGTCCTCCACCGCCGGTTCTCCGGCGGCGTCACCGCCGAGAACGAGGACGCCGACGGCGGCGAGGAGGAGGAAGAGGCCGACGCCGCCGCCGTCGCCGGCTGGGTGGAGGAACTCCGCGAGCTGCGCGTCGCCGAGCTCCGCCGCGAGGTCGAGAAATACGATCTCTCGATCGGGTCGTTGCAATCAAAAGTGAAACGGCTCAAGGAGGAGAGGGAAAAGAGCATCTCCGGCGAGACGAAGCCGCCGCCGGCGGCGGCGGC GGTGAAGGAGGAGGAGGAGGATGTACGGAAGGGATCACCGGAGGAGGCCGGCGCCGTGGAGGACAGGGTCTCCGGCCACGAATCCGGCCGGTCATGCAAGGAGTCGAACTCGTCAGATCTGAAGCGGCCGGAGAACGACCCCGCGGTCGCCGACGACGACGACCGGGAGGCGGAGGAGGAGGAGGAGGCGGCGGCGGCGCCCGCGGCCGGCGACATCGCCGTGAAGGAGGAGGCG TCGGGCGAGTCGGTGGCTGGGTCGAAGGAGGCGGACGTCGAGAAGGAGAGCAGCGACGTGCAGAGCTCCGCCAGCCCGTCCCGCCGCCGGCGACGGAAGGGCGGAGGCGGCGGCGAAGTGGCGGAGGCGGCGTCGCCGTCGGTGTCCGTGCCCCTCCCCGCCGCCGAGGCCGAGCCGCTCGTCGCCTTCCTCGAGTCGGTCCGGACCAGCAAGGCCGGCGCCGTGTTCGAGCGGCGGCTCGATAGCCAGGATGGGGAGAGGTACAGTGGCACGATCAGGCGCCATGTGGACCTGGAGACGGTCAGGTCGAGGCTGGTGGGTGCAACGGCGGCGGCGGCGGCGGCGGCGTGCTACGCGTCGGCGTCCGAGTTCTACCGCGACATGATGCTGCTCTGCGCCAACGCGCTCGTCTTCTTCCCGCGCGGCTCGCCGGAGCACGCCGCCGCGCTCCAGCTGCGCGCGCTCGTCTCCAAGCAGGTCTCCAAGGACCGGCAGCCTCACGCCTGGGCGA]
[+] EMBL AU183902 [ GGGGACGTCGGAGGACCTGCTCCTGGCGTGCGCCGTGAGCCGCCATGGGACGGCGAGCTGGGACGCGGTGGCGAAGGAGATGCAGTCGAGGTGCCCTTCCGCCGCCGTGTTCACCCCCACCACCTGCCGCCTCCGGTTCCGCGTCCTCCACCGCCGGTTCTCCGGCGGCGTCACCGCCGAGAACGAGGACGCCGACGGCGGCGAGGAGGAGGAAGAGGCCGACGCCGCCGCCGTCGCCGGCTGGGTGGAGGAACTCCGCGAGCTGCGCGTCGCCGAGCTCCGCCGCGAGGTCGAGAAATACGATCTCTCGATCGGGTCGTTGCAATCAAAAGTGAAACGGCTCAAGGAGGAGAGGGAAAAGAGCATCTCCGGCGAGACGAAGCCGCCGCCGGCGGCGGCGGCGGGTGAAGGAGGAGGAGGAGGATGTCCGGA ]
[+] EMBL CB672903 [ CATCTCCGGCGAGACGAAGCCGCCGCCGGCGGCGGCGGC GGTGAAGGAGGAGGAGGAGGATGTACGGAAGGGATCACCGGAGGAGGCCGGCGCCGTGGAGGACAGGGTCTCCGGCCACGAATCCGGCCGGTCATGCAAGGAGTCGAACTCGTCAGATCTGAAGCGGCCGGAGAACGACCCCGCGGTCGCCGACGACGACGACCGGGAGGCGGAGGAGGAGGAGGAGGCGGCGGCGGCGCCCGCGGCCGGCGACATCGCCGTGAAGGAGGAGGCG TCGGGCGAGTCGGTGGCTGGGTCGAAGGAGGCGGACGTCGAGAAGGAGAGCAGCGACGTGCAGAGCTCCGCCAGCCCGTCCCGCCGCCGGCGACGGAAGGGCGGAGGCGGCGGCGAATAGGCGGAGGCGGCGTCGCCGTCGGTGTCCGTGCCCCTCCCCGCCGCCGAGGCCGAGCCGCTCGTCGCCTTCCTCGAGTCGGTCCGGACCAGCAAGGCCGGCGCCGTGTTCGAGCGGCGGCTCGATAGCCAGGATGGGGAGAGGTACAGTGGCACGATCAGGCGCCATGTGGACCTGGAGACGGTCAGGTCGAGGCTGGTGGGTGCAACGGCGGCGGCGGCGGCGGCGGCGTGCTACGCGTCGGCGTCCGAGTTCTACCGCGACATGATGCTGCTCTGCGCCAACGCGCTCGTCTTCTTCCCGCGCGGCTCGCCGGAGCACGCCGCCGCGCTCCAGCTGCGCGCGCTCGTCTCCAAGCAGG ]
[+] EMBL CB672901 [ CATCTCCGGCGAGACGAATCCGCCGCCGGCGGCGGCGGC GGTGAAGGAGGAGGAGGAGGATGTACGGAAGGGATCACCGGAGGAGGCCGGCGCCGTGGAGGACAGGGTCTCCGGCCACGAATCCGGCCGGTCATGCAAGGAGTCTAACTCGTCAGATCTGAAGCGGCCGGAGAACGACCCCGCGGTCGCCGACGACTACCACCGGGAGGCGGAGGAGGATGAGGAGGCGGCGGCGGCGCCCGCGGCCGGCGACATCGCCGTGAAGGAGGAGGCGTTCTGGCGAGTCGGTGGCTGGGTCGAATGAGGCGGACGTCTATAACGAGAGCAGCGACTTGCAGAGCTCCGCCAGCCCGTCCCGCCGCCGGCGACGGAATGGCGGAGGCTGCGGCTAATAGGCGGAGGCGGCGTCGCCGTCGGTGTCCGTGCCCCTCCCCGCCGCCGAGGCCGAGCCGCTCGTCGCCTTCCTCGAGTCGGTCCGGACCAGCAAGGCCGGCGCCGTGTTCGAGCGGCGGCTCGATAGCCAGGATGGGGAGAGGTACAGTGGCACGATCAGGCGCCATGTGGACCTGGAGACGGTCAGGTCGAGGCTGGTGGGTGCAACGGCGGCGGCGGCGGCGGCGGCGTGCTACGCGTCGGCGTCCGAGTTCTACCGCGACATGATGCTGCTCTGCGCCAACGCGCTCGTCTTCTTCCCGCGCGGCTCGCCGGAGCACGCCGCCGCGCTCCAGCTGC ]
[+] EMBL AU077629 [ CACGATCAGGCGCCATGTGGACCTGGAGACGGTCAGGTCGAGGCTGGTGGGTGCAACGGCGGCGGCGGCGGCGGCGGCGTGCTACGCGTCGGCGTCCGAGTTCTACCGCGACATGATGCTGCTCTGCGCCAACGCGCTCGTCTTCTTCCCGCGCGGCTCGCCGGAGCACGCCGCCGCGCTCCAGCTGCGCGCGCTCGTCTCCAAGCAGGTCTCCAAGGACCGGCAGCCTCACGCCGGGGCGA]
consensusID : consensus_9977#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 713 fasta sequence
[GAAGAAGAGAGAGAAAGAGAGAGAGAGAGAAGGCCCAAACACCACCAAACCCTAGCCCTCACCTCGCCCCGCCGTCCATGGAGGCGGCGCTGTGACCCGCCGCCGCCGCCGCCGTCGTCGTCGTCGTGGCGTGCGGAACCGATAGGGCGGAGGGGATGACCGCCAGATCGGGCGACCCCGGCGTCTCGCCGGAGTCGTCGTCTGCGGCGGCGGCGGCGGCGGGGTCCGGGGGCGGGGAGATCTGGGGGACGTCGGAGGACCTGCTCCTGGCGTGCGCCGTGAGCCGCCATGGGACGGCGAGCTGGGACGCGGTGGCGAAGGAGATGCAGTCGAGGTGCCCTTCCGCCGCCGTGTTCACCCCCACCACCTGCCGCCTCCGGTTCCGCGTCCTCCACCGCCGGTTCTCCGGCGGCGTCACCGCCGAGAACGAGGACGCCGACGGCGGCGAGGAGGAGGAAGAGGCCGACGCCGCCGCCGTCGCCGGCTGGGTGGAGGAACTCCGCGAGCTGCGCGTCGCCGAGCTCCGCCGCGAGGTCGAGAAATACGATCTCTCGATCGGGTAAAAACCAGCCCGAAAATAACCAAAAAAAGAAATTAATAAACACCTTGTTTTTTTATTTTAACTTTCGGCTGGTTCGTGCATTGCCCGCCACTCTCCACCGTCTGATGCTGATCGGTCGGCCACAATTTTTTTGGAATAAACTGCTTATTGC]
[+] EMBL AK111116 [GAAGAAGAGAGAGAAAGAGAGAGAGAGAGAAGGCCCAAACACCACCAAACCCTAGCCCTCACCTCGCCCCGCCGTCCATGGAGGCGGCGCTGTGACCCGCCGCCGCCGCCGCCGTCGTCGTCGTCGTGGCGTGCGGAACCGATAGGGCGGAGGGGATGACCGCCAGATCGGGCGACCCCGGCGTCTCGCCGGAGTCGTCGTCTGCGGCGGCGGCGGCGGCGGGGTCCGGGGGCGGGGAGATCTGGGGGACGTCGGAGGACCTGCTCCTGGCGTGCGCCGTGAGCCGCCATGGGACGGCGAGCTGGGACGCGGTGGCGAAGGAGATGCAGTCGAGGTGCCCTTCCGCCGCCGTGTTCACCCCCACCACCTGCCGCCTCCGGTTCCGCGTCCTCCACCGCCGGTTCTCCGGCGGCGTCACCGCCGAGAACGAGGACGCCGACGGCGGCGAGGAGGAGGAAGAGGCCGACGCCGCCGCCGTCGCCGGCTGGGTGGAGGAACTCCGCGAGCTGCGCGTCGCCGAGCTCCGCCGCGAGGTCGAGAAATACGATCTCTCGATCGGGTAAAAACCAGCCCGAAAATAACCAAAAAAAGAAATTAATAAACACCTTGTTTTTTTATTTTAACTTTCGGCTGGTTCGTGCATTGCCCGCCACTCTCCACCGTCTGATGCTGATCGGTCGGCCACAATTTTTTTGGAATAAACTGCTTATTGC]
[+] EMBL AU183244 [ gGGCGGCGGCGGGGTCCGGGGGCGGGGAGATCTGGGGGACGTCGGAGGACCTGCTCCTGGCGTGCGCCGTGAGCCGCCATGGGACGGCGAGCTGGGACGCGGTGGCGAAGGAGATGCAGTCGAGGTGCCCTTCCGCCGCCGTGTTCACCCCCACCACCTGCCGCCTCCGGTTCCGCGTCCTCCACCGCCGGTTCTCCGGCGGCGTCACCGCCGAGAACGAGGACGC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9977#0 CACACGCAGAAGAAGAGAGAGAAAGAGAGAGAGAGAGAAGGCCCAAACACCACCAAACCC 60
consensus_9977#1 --------GAAGAAGAGAGAGAAAGAGAGAGAGAGAGAAGGCCCAAACACCACCAAACCC 52
****************************************************
consensus_9977#0 TAGCCCTCACCTCGCCCCGCCGTCCATGGAGGCGGCGCTGTGACCCGCCGCCGCCGCCGC 120
consensus_9977#1 TAGCCCTCACCTCGCCCCGCCGTCCATGGAGGCGGCGCTGTGACCCGCCGCCGCCGCCGC 112
************************************************************
consensus_9977#0 CGTCGTCGTCGTCGTGGCGTGCGGAACCGATAGGGCGGAGGGGATGACCGCCAGATCGGG 180
consensus_9977#1 CGTCGTCGTCGTCGTGGCGTGCGGAACCGATAGGGCGGAGGGGATGACCGCCAGATCGGG 172
************************************************************
consensus_9977#0 CGACCCCGGCGTCTCGCCGGAGTCGTCGTCTGCGGCGGCGGCGGCGGCGGGGTCCGGGGG 240
consensus_9977#1 CGACCCCGGCGTCTCGCCGGAGTCGTCGTCTGCGGCGGCGGCGGCGGCGGGGTCCGGGGG 232
************************************************************
consensus_9977#0 CGGGGAGATCTGGGGGACGTCGGAGGACCTGCTCCTGGCGTGCGCCGTGAGCCGCCATGG 300
consensus_9977#1 CGGGGAGATCTGGGGGACGTCGGAGGACCTGCTCCTGGCGTGCGCCGTGAGCCGCCATGG 292
************************************************************
consensus_9977#0 GACGGCGAGCTGGGACGCGGTGGCGAAGGAGATGCAGTCGAGGTGCCCTTCCGCCGCCGT 360
consensus_9977#1 GACGGCGAGCTGGGACGCGGTGGCGAAGGAGATGCAGTCGAGGTGCCCTTCCGCCGCCGT 352
************************************************************
consensus_9977#0 GTTCACCCCCACCACCTGCCGCCTCCGGTTCCGCGTCCTCCACCGCCGGTTCTCCGGCGG 420
consensus_9977#1 GTTCACCCCCACCACCTGCCGCCTCCGGTTCCGCGTCCTCCACCGCCGGTTCTCCGGCGG 412
************************************************************
consensus_9977#0 CGTCACCGCCGAGAACGAGGACGCCGACGGCGGCGAGGAGGAGGAAGAGGCCGACGCCGC 480
consensus_9977#1 CGTCACCGCCGAGAACGAGGACGCCGACGGCGGCGAGGAGGAGGAAGAGGCCGACGCCGC 472
************************************************************
consensus_9977#0 CGCCGTCGCCGGCTGGGTGGAGGAACTCCGCGAGCTGCGCGTCGCCGAGCTCCGCCGCGA 540
consensus_9977#1 CGCCGTCGCCGGCTGGGTGGAGGAACTCCGCGAGCTGCGCGTCGCCGAGCTCCGCCGCGA 532
************************************************************
consensus_9977#0 GGTCGAGAAATACGATCTCTCGATCGGGTCGTTGCAATCAAAAGTGAAACGGCTCAAGGA 600
consensus_9977#1 GGTCGAGAAATACGATCTCTCGATCGGGTA---AAAACCAGCCCGAAAATAACCAAAAAA 589
***************************** ** ** *** * ** *
consensus_9977#0 GGAGAGGGA-AAAGAGCATCTCCGGCGAGACGAAGCCGCCGCCGGCGGCGGCGGCGGTGA 659
consensus_9977#1 AGAAATTAATAAACACCTTGTTTTTTTATTTTAACTTTCGGCTGGT--------TCGTGC 641
** * * *** * * * * * ** * ** ** ***
consensus_9977#0 AGGAGGAGGAGGAGGATGTACGGAAGGGATCACCGGAGGAGGCCGGCGCCGTGGAGGACA 719
consensus_9977#1 AT--------------TGCCCGCCACTCTCCACCGTCTGATGCTGAT-CGGTCGGCCACA 686
* ** ** * ***** ** ** * * ** * ***
consensus_9977#0 GGGTCTCCGGCCACGAATCCGGCCGGTCATGCAAGGAGTCGAACTCGTCAGATCTGAAGC 779
consensus_9977#1 ATTTTTTTGGA-ATAAACT--GCTTATTGC------------------------------ 713
* * ** * ** ** *
consensus_9977#0 GGCCGGAGAACGACCCCGCGGTCGCCGACGACGACGACCGGGAGGCGGAGGAGGAGGAGG 839
consensus_9977#1 ------------------------------------------------------------
consensus_9977#0 AGGCGGCGGCGGCGCCCGCGGCCGGCGACATCGCCGTGAAGGAGGAGGCGTCGGGCGAGT 899
consensus_9977#1 ------------------------------------------------------------
consensus_9977#0 CGGTGGCTGGGTCGAAGGAGGCGGACGTCGAGAAGGAGAGCAGCGACGTGCAGAGCTCCG 959
consensus_9977#1 ------------------------------------------------------------
consensus_9977#0 CCAGCCCGTCCCGCCGCCGGCGACGGAAGGGCGGAGGCGGCGGCGAATAGGCGGAGGCGG 1019
consensus_9977#1 ------------------------------------------------------------
consensus_9977#0 CGTCGCCGTCGGTGTCCGTGCCCCTCCCCGCCGCCGAGGCCGAGCCGCTCGTCGCCTTCC 1079
consensus_9977#1 ------------------------------------------------------------
consensus_9977#0 TCGAGTCGGTCCGGACCAGCAAGGCCGGCGCCGTGTTCGAGCGGCGGCTCGATAGCCAGG 1139
consensus_9977#1 ------------------------------------------------------------
consensus_9977#0 ATGGGGAGAGGTACAGTGGCACGATCAGGCGCCATGTGGACCTGGAGACGGTCAGGTCGA 1199
consensus_9977#1 ------------------------------------------------------------
consensus_9977#0 GGCTGGTGGGTGCAACGGCGGCGGCGGCGGCGGCGGCGTGCTACGCGTCGGCGTCCGAGT 1259
consensus_9977#1 ------------------------------------------------------------
consensus_9977#0 TCTACCGCGACATGATGCTGCTCTGCGCCAACGCGCTCGTCTTCTTCCCGCGCGGCTCGC 1319
consensus_9977#1 ------------------------------------------------------------
consensus_9977#0 CGGAGCACGCCGCCGCGCTCCAGCTGCGCGCGCTCGTCTCCAAGCAGGTCTCCAAGGACC 1379
consensus_9977#1 ------------------------------------------------------------
consensus_9977#0 GGCAGCCTCACGCCTGGGCGA 1400
consensus_9977#1 ---------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||