These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9991#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 801 fasta sequence [GAGGACGAGACAAGGGGGTTGATGGNTGANNAAAAGGANAGTGGAGAGAGAAAGAAAGAGGACCACAGNTCCTNGAAGAAAAGCNAGATAAAANGGAGAAGGTTTAGGATTCTTCGNTGAAACCACCTGTTCATATAGCTGGAAGGCCTAATGTTCCTCCGTACCCCCTTCCAGCTCTTCCCATTGACGATGATGAAATTTNTTCCAAAGCANTTGGAGGNCCAACAGGAGAAATCCTTGAAACTAATGCCCAAGTTTNGAGNCAAATTTCAACCAACCTCAGCACTATGCAGATNCAGGATAACATNTCTCTACTGTGCCAAACTAGAGACAATATACTCAGGGTCTTGAAAGAGATAAATGATGCTCCAGATATCATGAAGCAGATGCCACCGCTACCAGTGAAGATAAACGAGGAGCTAGTCAACTCAATGCTCCCCAGGCCAACTGTACCTATGCAGTAGTGAACTAG-TGATAGTGAATGAACATATATCCTCAGTAGTCTCAAGAGCTCT-TTAGAATAGACAGCTAAAATAAAAATGCCAGCCTTGTTCTG-TTCGTTCATTGTGTAGCTCCTCTGGTCCTTGATCTAATCTGTTCCTTTCAGCATGTTCCGTCTAGTACTCTAGATTGTTGA-CCTTCCAACC-GTTCTCC-AAATCAG-CCGGTTGGAACATGTACCATACTG-CCATGGGACATGGTTT-CCTTCTACAGCAGTGTCA-CCTTCAAAC-TCTGG-CATGNTTTTGTAATCTATA-GCTG-TTTAGCCTAATATG-AT-GGAAT-ATTGG--AATGGGAAGCCAAGATTTA] [+] EMBL CB097100 [GAGGACGAGACAAGGGGGTTGATGGNTGANNAAAAGGANAGTGGAGAGAGAAAGAAAGAGGACCACAGNTCCTNGAAGAAAAGCNAGATAAAANGGAGAAGGTTTAGGATTCTTCGNTGAAACCACCTGTTCATATAGCTGGAAGGCCTAATGTTCCTCCGTACCCCCTTCCAGCTCTTCCCATTGACGATGATGAAATTTNTTCCAAAGCANTTGGAGGNCCAACAGGAGAAATCCTTGAAACTAATGCCCAAGTTTNGAGNCAAATTTCAACCAACCTCAGCACTATGCAGATNCAGGATAACATNTCTCTACTGTGCCAAACTAGAGACAATATACTCAGGGTCTTGAAAGAGATAAATGATGCTCCAGATATCATGAAGCAGATGCCACCGCTACCAGNGAAGATAAACGAGGAGCTAGTCAACTCAATGCTCCCCAGGCCAACTGTACCTATGCAGTAGNGAACTAGCTGATAGTGAATGAACATATATCCTCAGTAGTCTCAAGAGCTCTCTTAGAATAGACAGCTAAAATAAAAATGCCAGCCTTGTTCTG TTCGTTCATTGTGTAGCTCCTCTGGTCCTTGATCTAATCTGNTCCTTTCAGCATGTTNCGTCTAGTACTCTAGATTGGTGACCCTTCCAACCGGTTCTCCAAAATCAGNCCGGTTGGAACATGTACCATACTGCCCATGGGACATGGTTTNCTTTCTACAGCAGTGNCACCCTTCAAACTTCTGGCCATGNTTTTGNNATCTATAGGCTGNTTAAGCCTAATATGNATGGGAATAATTGGGNANNGNGAAGCCAAGATTTA] [+] EMBL CA766953 [ TTTCAGATTCTTCGTTGAAACCACCTGTTCATATAGCTGGAAGGCCTAATGTTCCTCCGTACCCCCTTCCAGCTCTTCCCATTGACGATGATGAAATTTCTTCCAAAGCAATTGGAGGTCCAACAGGAGAAATCCTTGAAACTAATGCCCAAGTTTTGAGTCAAATTTCAACCAACCTCAGCACTATGCAGATACAGGATAACATCTCTCTACTGTGCCAAACTAGAGACAATATACTCAGGGTCTTGAAAGAGATAAATGATGCTCCAGATATCATGAAGCAGATGCCGCCGCTACCAGTGAAGATAAACGAGGAGCTAGTCAACTCAATGCTCCCCGGGCCAACTGTACCTATGCAGTAGTGAACTAG TGATAGTGAATGAACATATACCCTCAGTAGTCTCAAGAGCTCT TTAGAATAGACAGCTAAAATAAAAATGCCAGCCTTGTTCTG TTCGTTCATTGTGTAGCTCCTCTGGTCCTTGATCTAATCTGTTCCTTTCAGCATGTTCCGTCTAGTACTCTAGATTGTTGA CCTTCCAACC GTTCTCC AAATCAG CCGGTTGGAACATGTACCATACTG CCATGGGACATGGTTT CCTTCTACAGCAGTGTCA CCTTCAAAC TCTGG CATGN TTTGTAATCTATA GCTG GTTAGCCTAATATG AT GGAAT ATTGG AATGGGAAGCCAAGATTTA] [+] EMBL AA750575 [ CAGGGTCTTGAAAGAGAGAAATGATGCTCCAGATATCATGAAGCAGATGCCACCGCTACCAGTGAAGATAAACGAGGAGCTAGTCAACTCAATGCTCCCCAGGCCAACTGTACCTATGCAGTAGTGAACTAG TGATAGTGAATGACCATATATCCTCAGTAGTCTCAAGAGCTCT TTAGAATAGACAGCTAAAATAAAAATGCCAG CTTGTTCTGTTTCGTTCA ] [-] EMBL BI306544 [ CTCCAGATATCATGAAGCAGATGCCACCGCTACCAGTGAAGATAAACGAGGAGCTAGTCAACTCAATGCTCCCCAGGCCAACTGTACCTATGCAGTAGTGAACTAG TGATAGTGAATGAACATATATCCTCAGTAGTCTCAAGAGCTCT TTAGAATAGACAGCTAAAATAAAAATGCCAGCCTTGTTCTG TTCGTTCATTGTGTAGCTCCTCTGGTCCTTGATCTAATCTGTTCCTTTCAGCATGTTCCGTCTAGTACTCTAGATTGTTGA CCTTCCAACC GTTCTCC AAATCAG CCGGTTGGAACATGTACCATACTG CCATGGGACATGGTTT CCTTCTACAGCAGTGTCA CCTTCAAAC TCTGG CATG TTTTGTAATCTATA GCTG TTTAGCCTAATATG AT GGAAT ATTGG AATGGGAAGCCAAGA ] [-] EMBL CB967088 [ TCATGAAGCAGATGCCACCGCTACCAGTGAAGATAAACGAGGAGCTAGTCAACTCAATGCTCCCCAGGCCAACTGTACCTATGCAGTAGTGAACTAG TGATAGTGAATGAACATATATCCTCAGTAGTCTCAAGAGCTCT TTAGAATAGACAGCTAAAATAAAAATGCCAGCCTTGTTCTG TTCGTTCATTGTGTAGCTCCTCTGGTCCTTGATCTAATCTGTTCCTTTCAGCATGTTCCGTCTAGTACTCTAGATTGTTGA CCTTCCAACC GTTCTCC AAATCAG CCGGTTGGAACATGTACCATACTG CCATGGGACATGGTTT CCTTCTACAGCAGTGTCA CCTTCAAAC TCTGG CATG TTTTGTAATCTATA GCTG TTTAGCCTAATATG AT GGAAT ATTGG AATGGGAAGCCAAGA ] consensusID : consensus_9991#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 429 fasta sequence [TTGAAAAAGATAAATGATGCTCCAGATATCATGAAGCAGATGCCCCCGCTNCCAGTGAAGATAAACGAGGAGCTAGTCAACTCAATGCTCCCCAGGCCAACTGTACCTATGCAGTAGTGAACTAGTGATAGTGAATGAACATATATCCTCAGTAGTCTCAAGAGCTCTTTAGAATAGNCAGCTAAAATAAAAATGCCAGCCTTGTTCTGTTCGTTCATTGTGTAGCTCCTCTGGTCCTTGATCTAATCTGTTCCTTTCAGCATGTTCCGTCTAGTACTCTAGATTGTTGACCTTCCAACCGTTCTCCAAATCAGCCGGTTGGAACATGTACCATACTGCCATGGGACATGGTTTCCTTNTACAGCAGTGTCACCTTCAAACTCTGGCATGTTTTGTAATCTATAGCTGTTTAGCCTAAAAAAAAAAAAA] [+] EMBL AU173177 [TTGAAAAAGATAAATGATGCTCCAGATATCATGAAGCAGATGCCCCCGCTNCCAGTGAAGATAAACGAGGAGCTAGTCAACTCAATGCTCCCCAGGCCAACTGTACCTATGCAGTAGTGAACTAGTGATAGTGAATGAACATATATCCTCAGTAGTCTCAAGAGCTCTTTAGAATAGNCAGCTAAAATAAAAATGCCAGCCTTGTTCTGTTCGTTCATTGTGTAGCTCCTCTGGTCCTTGATCTAATCTGTTCCTTTCAGCATGTTCCGTCTAGTACTCTAGATTGTTGACCTTCCAACCGTTCTCCAAATCAGCCGGTTGGAACATGTACCATACTGCCATGGGACATGGTTTCCTTNTACAGCAGTGTCACCTTCAAACTCTGGCATGTTTTGTAATCTATAGCTGTTTAGCCTAAAAAAAAAAAAA] consensusID : consensus_9991#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 359 fasta sequence [AAAATCCTTGAAACTAATGCCCAAGTTTTGAGTCAAATTTCAACCAACCTCAGCACTATGCAGATACAGGATAACATCTCTCTACTGTGCCAAACTAGAGACAATATACTCAGGGTCTTGAAAGAGATATTTGATGCTCCAGATATCATGAAGCAGATGCCACCGCTACCAGGTGAAGATAAACGAGGAGCTAGTCAACTCAATGGCTCCCCAGGCCAACTGTACCTATGCAGGAGTGAACTAGTGCATAGTGGAACGAACATATATCCTCAGTCAGTCTCTAGAGCTTCTTTCAGGCAATTGAACAGGCTGCCATCAAAGATTGCCCCAGCCCCTTGGTTCCTGGTTTCGGTTTCCAC] [+] EMBL AA754122 [AAAATCCTTGAAACTAATGCCCAAGTTTTGAGTCAAATTTCAACCAACCTCAGCACTATGCAGATACAGGATAACATCTCTCTACTGTGCCAAACTAGAGACAATATACTCAGGGTCTTGAAAGAGATATTTGATGCTCCAGATATCATGAAGCAGATGCCACCGCTACCAGGTGAAGATAAACGAGGAGCTAGTCAACTCAATGGCTCCCCAGGCCAACTGTACCTATGCAGGAGTGAACTAGTGCATAGTGGAACGAACATATATCCTCAGTCAGTCTCTAGAGCTTCTTTCAGGCAATTGAACAGGCTGCCATCAAAGATTGCCCCAGCCCCTTGGTTCCTGGTTTCGGTTTCCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9991#0 GAGGACGAGACAAGGGGGTTGATGGNTGANNAAAAGGANAGTGGAGAGAGAAAGAAAGAG 60 consensus_9991#1 ------------------------------------------------------------ consensus_9991#2 ------------------------------------------------------------ consensus_9991#0 GACCACAGNTCCTNGAAGAAAAGCNAGATAAAANGGAGAAGGTTTAGGATTCTTCGNTGA 120 consensus_9991#1 ------------------------------------------------------------ consensus_9991#2 ------------------------------------------------------------ consensus_9991#0 AACCACCTGTTCATATAGCTGGAAGGCCTAATGTTCCTCCGTACCCCCTTCCAGCTCTTC 180 consensus_9991#1 ------------------------------------------------------------ consensus_9991#2 ------------------------------------------------------------ consensus_9991#0 CCATTGACGATGATGAAATTTNTTCCAAAGCANTTGGAGGNCCAACAGGAGAAATCCTTG 240 consensus_9991#1 ------------------------------------------------------------ consensus_9991#2 --------------------------------------------------AAAATCCTTG 10 consensus_9991#0 AAACTAATGCCCAAGTTTNGAGNCAAATTTCAACCAACCTCAGCACTATGCAGATNCAGG 300 consensus_9991#1 ------------------------------------------------------------ consensus_9991#2 AAACTAATGCCCAAGTTTTGAGTCAAATTTCAACCAACCTCAGCACTATGCAGATACAGG 70 consensus_9991#0 ATAACATNTCTCTACTGTGCCAAACTAGAGACAATATACTCAGGGTCTTGAAAGAGATAA 360 consensus_9991#1 -----------------------------------------------TTGAAAAAGATAA 13 consensus_9991#2 ATAACATCTCTCTACTGTGCCAAACTAGAGACAATATACTCAGGGTCTTGAAAGAGATAT 130 ****** ***** consensus_9991#0 ATGATGCTCCAGATATCATGAAGCAGATGCCACCGCTACCAG-TGAAGATAAACGAGGAG 419 consensus_9991#1 ATGATGCTCCAGATATCATGAAGCAGATGCCCCCGCTNCCAG-TGAAGATAAACGAGGAG 72 consensus_9991#2 TTGATGCTCCAGATATCATGAAGCAGATGCCACCGCTACCAGGTGAAGATAAACGAGGAG 190 ****************************** ***** **** ***************** consensus_9991#0 CTAGTCAACTCAATG-CTCCCCAGGCCAACTGTACCTATGCAGTAGTGAACTAGTG-ATA 477 consensus_9991#1 CTAGTCAACTCAATG-CTCCCCAGGCCAACTGTACCTATGCAGTAGTGAACTAGTG-ATA 130 consensus_9991#2 CTAGTCAACTCAATGGCTCCCCAGGCCAACTGTACCTATGCAGGAGTGAACTAGTGCATA 250 *************** *************************** ************ *** consensus_9991#0 GTG-AATGAACATATATCCTCAGT-AGTCTCAAGAGCTCTTTAGAATAGACAGCTAAAAT 535 consensus_9991#1 GTG-AATGAACATATATCCTCAGT-AGTCTCAAGAGCTCTTTAGAATAGNCAGCTAAAAT 188 consensus_9991#2 GTGGAACGAACATATATCCTCAGTCAGTCTCTAGAGCTTCTTT---CAGGCAATTGAAC- 306 *** ** ***************** ****** ****** ** ** ** * ** consensus_9991#0 AAAAATGCCAGCCTTGTTCTGTTCGTTCATTGTGTAGCTCCTCTGGTCCTTGATCTAATC 595 consensus_9991#1 AAAAATGCCAGCCTTGTTCTGTTCGTTCATTGTGTAGCTCCTCTGGTCCTTGATCTAATC 248 consensus_9991#2 -AGGCTGCCA------------TCAAAGATTGCCCCAGCCCCTTGGTTCCTGGTTTCGGT 353 * ***** ** **** ** **** * ** * * consensus_9991#0 TGTTCCTTTCAGCATGTTCCGTCTAGTACTCTAGATTGTTGACCTTCCAACCGTTCTCCA 655 consensus_9991#1 TGTTCCTTTCAGCATGTTCCGTCTAGTACTCTAGATTGTTGACCTTCCAACCGTTCTCCA 308 consensus_9991#2 TTCCAC------------------------------------------------------ 359 * * consensus_9991#0 AATCAGCCGGTTGGAACATGTACCATACTGCCATGGGACATGGTTTCCTTCTACAGCAGT 715 consensus_9991#1 AATCAGCCGGTTGGAACATGTACCATACTGCCATGGGACATGGTTTCCTTNTACAGCAGT 368 consensus_9991#2 ------------------------------------------------------------ consensus_9991#0 GTCACCTTCAAACTCTGGCATGNTTTTGTAATCTATAGCTGTTTAGCCTAATATGATGGA 775 consensus_9991#1 GTCACCTTCAAACTCTGGCATGTTTT-GTAATCTATAGCTGTTTAGCCTAAAAAAAAAAA 427 consensus_9991#2 ------------------------------------------------------------ consensus_9991#0 ATATTGGAATGGGAAGCCAAGATTTA 801 consensus_9991#1 AA------------------------ 429 consensus_9991#2 -------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||