These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10090#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1115 fasta sequence [GGCCAANAATTTGGCACGAGGTCAGAATTCAATGTCTGGCCAACAACCACACCACCACCAACAACAGGTTTGGCCGTCGTCTTTGCCAACAGGTTGGAGACGTGAAGAATGTATGCGACCTAATGGATTAGGCACTGGGAAATCAGATGTTTATTATATTAGTCCTCAAAATCAAATTGTACGAAATAAACAAGAAATGCAAACAATTTTAGGTGATAAATATGATATTGGTCTGTTTGATTGGAGAATGGGTAAATTTGCGGTGAGTAACAACAACATTAATAATAATGCCAATAAGTCGAAAAGGCTGGAAGAACCAACTGCAGACACGTCATCAGCATCGTCACCAACAGCTAAAGTTCCGCGTGTAGATAATCAGTGCAGTTTACCAATGAGAAGGTGTCCATTCCCAATAACAAATGACATTAAACCGGTTATTGTACGTTCTCATCCTGAGTGTAAACGAACAGATGTAAAGAATACCAATCAAGAAACTCCTCATCAGTTATTTTGGGAAAAACGGTTAGCTGATCATGTGGCTATTGATCCGGATACTGGCGAATCTTTCAAACCCATTTCTTTGCCTAAAGGAATACAGAGTGCTGGAGTACCAGGTTATCAACCTGCTCAGTTAGTCCATAGTTTAATTCATGCGTTATCATCATCATCCTCTAAGATTTCTCCGATTATTGGTCAAGAGCAACAACCTTCAGCTATTGAGAAAAATCCTTGTGTTGTTATTAATCATTTACAACCAATGATTAAAACATTTATTGTAACCGATGACGATATACGTCGACAAGAAGCTCGTGTCAAAGAACTGCGAAAAAAACTAGAAATTGCAAGAAAAAAATTACATCCGCGATATGAAACTGAACGAGAAGGATGAACATATTTGTGTCTGTTTATCAGTTAGCAAACAGTTGTTTTTTTTTTGTTATTATTAATACCTCTCTTTGTTATTACCCGATTGTATAAACGGTTATAGTACTGTTCATTTCAGTATTGTTATGTTTTTCTTGTCAGGGTTCTATTTTCGTTTTAAGCCTTTTGTACAAAAAAATAATAAATGTATGTTCTATGTGTGCATGTGCATAAAAAAAAAAAAAAAAAAA] [+] EMBL CD080696 [GGCCAANAATTTGGCACGAGGTCAGAATTCAATGTCTGGCCAACAACCACACCACCACCAACAACAGGTTTGGCCGTCGTCTTTGCCAACAGGTTGGAGACGTGAAGAATGTATGCGACCTAATGGATTAGGCACTGGGAAATCAGATGTTTATTATATTAGTCCTCAAAATCAAATTGTACGAAATAAACAAGAAATGCAAACAATTTTAGGTGATAAATATGATATTGGTCTGTTTGATTGGAGAATGGGTAAATTTGCGGTGAGTAACAACAACATTAATAATAATGCCAATAAGTCGAAAAGGCTGGAAGAACCAACTGCAGACACGTCATCAGCATCGTCACCAACAGCTAAAGTTCCGCGTGTAGATAATCAGTGCAGTTTACCAATGAGAAGGTGTCCATTCCCAATAACAAATGACATTAAACCGGTTATTGTACGTTCTCATCCTGAGTGTAAACGAACAGATGTAAAGAATACCAATCAAGAAACTCCTCATCAGTTATTTTGGGAAAAACGGTTAGCTGATCATGTGGCTATTGATCCGGATACTGGCGAATCTTTCAAACCCATTTCTTTGCCTAAAGGAATACAGAGTGCTGGAGTACCAGGTTATCAACCTGCTCAGTTAGTCCATAGTTTAATTCATGCGTTATCATCATCATCCTCTAAGATTTCTCCGATTATTGGTCAAGAGCAACAACCTTCAGCTATTGAGA ] [-] EMBL CD146819 [ AGGTTTGGCCGTCGTCTTTGCCAACAGGTTGGAGACGTGAAGAATGTATGCGACCTAATGGATTAGGCACTGGGAAATCAGATGTTTATTATATTAGTCCTCAAAATCAAATTGTACGAAATAAACAAGAAATGCAAACAATTTTAGGTGATAAATATGATATTGGTCTGTTTGATTGGAGAATGGGTAAATTTGCGGTGAGTAACAACAACATTAATAATAATGCCAATAAGTCGAAAAGGCTGGAAGAACCAACTGCAGACACGTCATCAGCATCGTCACCAACAGCTAAAGTTCCGCGTGTAGATAATCAGTGCAGTTTACCAATGAGAAGGTGTCCATTCCCAATAACAAATGACATTAAACCGGTTATTGTACGTTCTCATCCTGAGTGTAAACGAACAGATGTAAAGAATACCAA ] [-] EMBL CD129001 [ TTGGCCGTCGTCTTTGCCAACAGGTTGGAGACGTGAAGAATGTATGCGACCTAATGGATTAGGCACTGGGAAATCAGATGTTTATTATATTAGTCCTCAAAATCGAATTGTACGAAATAAACAAG AACACGAAC ATTTTAGGTGA ] [+] EMBL CD083791 [ AGAAATGCAAACAATTTTAGGTGATAAATAT ATATTGGTCTGTTTGATTGGAGAATGGGT AATTTGCGGTGAGTAACAACAACATTAATAATAATGCCAATAAGTCGAAAAGGCTGGAAGAACCAACTGCAGACACGTCATCAGCATCGTCACCAACAGCTAAAGTTCCGCGTGTAGATAATCAGTGCAGTTTACCAATGAGAAGGTGTCCATTCCCAATAACAAATGACATTAAACCGGTTATTGTACGTTCTCATCCTGAGTGTAAACGAACAGATGTAAAGAATACCAATCAAGAAACTCCTCATCAGTTATTTTGGGAAAAACGGTTAGCTGATCATGTGGCTATTGATCCGGATACTGGCGAATCTTTCAAACCCATTTCTTTGCCTAAAGGAATACAGAGTGCTGGAGTACCAGGTTATCAACCTGCTCAGTTAGTCCATAGTTTAATTCATGCGTTATCATCATCATCCTCTAAGATTTCTCCGATTATTGGTCAA ] [+] EMBL CD115133 [ AACAACAGCGGTAGTAATAATGCCAATAAGTCGAAAAGGCTGGAAGAACCAACTGCAGACACGTCATCAGCATCGTCACCAACAGCTAAAGTTCCGCGTGTAGATAATCAGTGCAGTTTACCAATGAGAAGGTGTCCATTCCCAATAACAAATGACATTAAACCGGTTATTGTACGTTCTCATACTGCGTGTAAACCAACAGATGTAAAGAATGCC ] [+] EMBL CD142572 [ cgaGAGAGGGTGTCCATTCCCAATAACAAATGACATTAAACCGGTTATTGTATGTTCTCATCCTGAGTGTAAACGAACAGATGTAAAGAATACCAATCAAGAAACTCCTCATCAGTTATTTTGGGAAAAACGGGTAGCTGATCATGTGGCTATTGATCCGGATACTGGCGAATCTTTCAAACCCATTTCTTTGCCTACAGGAATACAGAGTGCTGGAGTACCAGGTTATCAACCTGCTCAGTTAGTCCATAGTTTAATTCATGCGTTA ] [+] EMBL CD142523 [ cgaGAGAGGGTGTCCATTCCCAATAACAAATGACATTAAACCGGTTATTGTATGTTCTCATCCTGAGTGTAAACGAACAGATGTAAAGAATACCAATCAAGAAACTCCTCATCAGTTATTTTGGGAAAAACGGTTAGCTGATCATGTGGCTATTGATCCGGATACTGGCGAATCTTTCAAACCCATTTCTTTGCCTAAAGGAATACAGAGTGCTGGAGTACCAGGTTATCAACCTGCTCAGTTAGTCCATAGTTTAATTCATGCGTTATCATCATCATCCTCTAAGATTTCTCCGATTATTGGTCAAGAGCAACAACCTTCAGCTATTGAGAAAAA ] [+] EMBL CD141557 [ CCCAATAACAAATGACATTAAACCGGTTATTGTATGTTCTCATCCTGAGTGTAAACGAACAGATGTAAAGAATACCAATCAAGAAACTCCTCATCAGTTATTTTGGGAAAAACGGTTAGCTGATCATGTGGCTATTGATCCGGATACTGGCGAATCTTTCAAACCCATTTCTTTGCCTAAAGGAATACAGAGTGCTGGAGTACCAGGTTATCAACCTGCTCAGTTAGTCCATAGTTTAATTCATGCGTTATCATCATCATCCTCTAAGATTTCTCCGATTATTGGTCAAGAGCAACACCNTTCAGCTATTGAGAAAAATCC ] [-] EMBL AI976133 [ GGTTATCAACCTGCTCAGTTAGTCCATAGTTTAATTCATGCGTTATCATCATCATCCTCTAAGATTTCTCCGATTATTGGTCAAGAGCAACAACCTTCAGCTATTGAGAAAAATCCTTGTGTTGTTATTAATCATTTACAACCAATGATTAAAACATTTATTGTAACCGATGACGATATACGTCGACAAGAAGCTCGTGTCAAAGAACTGCGAAAAAAACTAGAAATTGCAAGAAAAAAATTACATCCGCGATATGAAACTGAACGAGAAGGATGAACATATTTGTGTCTGTTTATCAGTTAGCAAACAGTTGTTTTTTTTTTGTTATTATTAATACCTCTCTTTGTTATTACCCGATTGTATAAACGGTTATAGTACTGTTCATTTCAGTATTGTTATGTTTTTCTTGTCAGGGTTCTATTTTCGTTTTAAGCCTTTTGTACAAAAAAATAATAAATGTATGTTCTATGTG ] [-] EMBL AI395717 [ AATGATT AAACCTTTATTGTAACCGATGACGATATACGTCGACAAG AGCTCGTGTCAAAGAACTGCGAAAAAAACTAGAAATTGCAAGAAAAAAATTACATCCGCGATATGAAACTGAACGAGAAGGATGAACATATTTGTGTCTGTTTATCAGTTAGCAAACAGTTGTTTTTTTTTTGTTATTATTAATACCTCTCTTTGTTATTACCCGATTGTATAAACGGTTATAGTACTGTTCATTTCAGTATTGTTATGTTTTTCTTGTCAGGGTTCTATTTTCGTTTTAAGCCTTTTGTACAAAAAAATAATAAATGTATGTTCTATGTGTGCATGTGCATAAAAAAAAAAAAAAAAAAA] consensusID : consensus_10090#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 452 fasta sequence [TTCAGCCAGCTTTAATTTGAAGGCCAATAGGTCTAAAAGGGTGTAAGACCCGACGGCAGACGAGTCATCAGCATGGTCGCCGACAGATAAGGTTCGGCGTGTAGATAATCAGGGCAGTTTACCAATTAGAAGGTGTCCATTCCCAATAACAAATGACATTATCTCGGTTATTGTACGTTCTCATCATGAGTGTAAACGAACAGATGTAAAGAATACCAATCAAGAAACTCCTCATCAGTTATTTTGGGAAAAACGGTTAGCTGATCATGTGGCTATTGATCCGGATACTGGCGAATCTTTCAAACCCATTTCTTTGCCTAAAGGAATACAGATATTTGTGGTTCATTTTGATGATGTAACTGTGATGTATAATCCTGTGAGTTTCTTAGTTATGAGGATAATAAGGGTAATATCATAATGAAAGGTAATTCTAGTCGCCCTCTTTGCCTCGT] [-] EMBL CD115128 [TTCAGCCAGCTTTAATTTGAAGGCCAATAGGTCTAAAAGGGTGTAAGACCCGACGGCAGACGAGTCATCAGCATGGTCGCCGACAGATAAGGTTCGGCGTGTAGATAATCAGGGCAGTTTACCAATTAGAAGGTGTCCATTCCCAATAACAAATGACATTATCTCGGTTATTGTACGTTCTCATCATGAGTGTAGACGAACAGATGTAAAGAATACCAATCAAGATACTCCTCATCAGTTATTTTGGAAAAGACGGTTAGCTGATCATGTGGCTATTGATCCGGATACTGGCGAATCTTTCAAACCCATTTCTTTGCGTAAAGGAATACAGATATTTGTGGTTCATTTTGATGATGTAGCTGTGATGTATAATCCTGTGAGTTTCTTAGTTATGAGGATAATAAGGGTAATATCATAATGAAAGGTAATTCTAGTCGTCATCTTTGCCTCGT] [-] EMBL CD115149 [ TGTAAACGATCAGATGTAAAGAATACCAATCAAGTAACTCCTCATCAGTTATTTTGGGAAAAACGGTTAGCTGATCATGTGGTTATTGATCCGGATACTGGCGAATCTCTCAAACCCATTTCTTTGCCTAAAGGAATACAGATATTTGTGGTTCATTTTGATGATGTAACTGTGATGTATAATCCTGTGAGTTTCTTAGTTATGAGGATAATAAGGGTAATATCATAATGAAAGGTAATTCTAGTCGCCCTCCTTGCCTCct] [-] EMBL CD115090 [ tgAACGGACAGATTTAAAGAATACCAATCAAGAAACTCCTCATCAGTTATTTTGGGAAAAACGGTTAGCTGATCATGTGGCTATTGATCCGGATACTGGCGAATCTTTCAAACCCATTTCTTTGCCTAAAGGAATACAGATATTTGTGGTTCATTTTGATGATGTAACTGTGATGTATAATCCTGTGAGTTTCTTAGTTATGAGGATAATAAGGGTAATATCATAATGAAAGGTAATTCTAGTCGCTCTTTT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10090#0 GGCCAANAATTTGGCACGAGGTCAGAATTCAATGTCTGGCCAACAACCACACCACCACCA 60 consensus_10090#1 ------------------------------------------------------------ consensus_10090#0 ACAACAGGTTTGGCCGTCGTCTTTGCCAACAGGTTGGAGACGTGAAGAATGTATGCGACC 120 consensus_10090#1 ------------------------------------------------------------ consensus_10090#0 TAATGGATTAGGCACTGGGAAATCAGATGTTTATTATATTAGTCCTCAAAATCAAATTGT 180 consensus_10090#1 ------------------------------------------------------------ consensus_10090#0 ACGAAATAAACAAGAAATGCAAACAATTTTAGGTGATAAATATGATATTGGTCTGTTTGA 240 consensus_10090#1 ------------------------------------------------------------ consensus_10090#0 TTGGAGAATGGGTAAATTTGCGGTGAGTAACAACAACATTAATAATAATGCCAATAAGTC 300 consensus_10090#1 ---------------------------TTCAGCCAGCTTTAATTTGAAGGCCAATAGGTC 33 * ** * ***** ** ******* *** consensus_10090#0 GAAAAGGCTGGAAGAACCAACTGCAGACACGTCATCAGCATCGTCACCAACAGCTAAAGT 360 consensus_10090#1 TAAAAGGGTGTAAGACCCGACGGCAGACGAGTCATCAGCATGGTCGCCGACAGATAAGGT 93 ****** ** **** ** ** ****** *********** *** ** **** *** ** consensus_10090#0 TCCGCGTGTAGATAATCAGTGCAGTTTACCAATGAGAAGGTGTCCATTCCCAATAACAAA 420 consensus_10090#1 TCGGCGTGTAGATAATCAGGGCAGTTTACCAATTAGAAGGTGTCCATTCCCAATAACAAA 153 ** **************** ************* ************************** consensus_10090#0 TGACATTAAACCGGTTATTGTACGTTCTCATCCTGAGTGTAAACGAACAGATGTAAAGAA 480 consensus_10090#1 TGACATTATCTCGGTTATTGTACGTTCTCATCATGAGTGTAAACGAACAGATGTAAAGAA 213 ******** ********************* *************************** consensus_10090#0 TACCAATCAAGAAACTCCTCATCAGTTATTTTGGGAAAAACGGTTAGCTGATCATGTGGC 540 consensus_10090#1 TACCAATCAAGAAACTCCTCATCAGTTATTTTGGGAAAAACGGTTAGCTGATCATGTGGC 273 ************************************************************ consensus_10090#0 TATTGATCCGGATACTGGCGAATCTTTCAAACCCATTTCTTTGCCTAAAGGAATACAGAG 600 consensus_10090#1 TATTGATCCGGATACTGGCGAATCTTTCAAACCCATTTCTTTGCCTAAAGGAATACAGAT 333 *********************************************************** consensus_10090#0 TGCTGGAGTACCAGGTTATCAACCTGCTCAGTTAGTCCATAGTTTAATTCATGCGTTATC 660 consensus_10090#1 ATTTGTGGT---------TCATTTTG------------ATGATGTAAC---TGTGATGT- 368 ** ** *** ** ** * *** ** * * * consensus_10090#0 ATCATCATCCTCTAAGATTTCTCCGATTATTGGTCAAGAGCAACAACCTTCAGCTATTGA 720 consensus_10090#1 ---ATAATCCTGTGAG-TTTCTTAGTTATGAGGATAATAAGGGTAATATC--ATAATGAA 422 ** ***** * ** ***** * * ** ** * ** * ** * consensus_10090#0 GAAAAATCCTTGTGTTGTTATTAATCATTTACAACCAATGATTAAAACATTTATTGTAAC 780 consensus_10090#1 AGGTAATTCTAGTCGCCCTCTTTGCCTCGT------------------------------ 452 *** ** ** * ** * * consensus_10090#0 CGATGACGATATACGTCGACAAGAAGCTCGTGTCAAAGAACTGCGAAAAAAACTAGAAAT 840 consensus_10090#1 ------------------------------------------------------------ consensus_10090#0 TGCAAGAAAAAAATTACATCCGCGATATGAAACTGAACGAGAAGGATGAACATATTTGTG 900 consensus_10090#1 ------------------------------------------------------------ consensus_10090#0 TCTGTTTATCAGTTAGCAAACAGTTGTTTTTTTTTTGTTATTATTAATACCTCTCTTTGT 960 consensus_10090#1 ------------------------------------------------------------ consensus_10090#0 TATTACCCGATTGTATAAACGGTTATAGTACTGTTCATTTCAGTATTGTTATGTTTTTCT 1020 consensus_10090#1 ------------------------------------------------------------ consensus_10090#0 TGTCAGGGTTCTATTTTCGTTTTAAGCCTTTTGTACAAAAAAATAATAAATGTATGTTCT 1080 consensus_10090#1 ------------------------------------------------------------ consensus_10090#0 ATGTGTGCATGTGCATAAAAAAAAAAAAAAAAAAA 1115 consensus_10090#1 ----------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||