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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10504#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 783 fasta sequence
[GTTACGAGGAACCGACACCAAAAGAGAAGAAACGTTTCGAAGATTTAGCTGTCTTGGATAGACAACGATTCAATCGTGAAATGTGTGATTACGTGCCACCAGATGGTATGAAAAAGGGAAAGAAACGCAAGGGTCCTAAGGACCCCACAGTACCTGCACGAGCCTGGTCTGCTTTCTTTTTCTTTTGTGATGAATTCCGTTCAAAAGTCAGAGAAAGTAATCCGGATTGGAAAGTCGCAGATATTGCTAAAGAGCTTGGACGTCAATGGGAAACTTGTCAAGATAAAGCAAAGTATGAACTGTTAGCTCAAAAAGATAAACAGCGTTATGAAGAGGACATGATAAAATATCGGGCGGGGACTTATGTTCCTAGAGAGAAGAAACTTGCAGGTGCTGTG-TCAAACTCTGCATCTATCAGGACTCCTGAAACTCAGAATCCAGATTGCACTACAG-TTACCAGCGCTGGAGGTGATGAAAACGGTGCGGAGTTAGAAGATGAAGATGATGGGGAACCTGATGAGGGTGAGGAAGAGTGAAGATCAGAACATTAGGTTTTTGATAACTCAGTTGTACAGGTCTATTGCATTTATAATGTTCTAACCCCCTTCTAATTCTTACCTAAACTNTGTATACATTGGTTNTATTGGTATTTTTGTATCATTCATAAATTGAATGTACATCATTCATACTTTGACTTTCGTTTATTGGGTGATGTAAGAATCTGAT-AACATATATATATTATTG-TCACTATTGAGTG-TACTGGATTG-AA-TTAT-ATAG-ACAGTT]
[+] EMBL CD082102 [GTTACGAGGAACCGACACCAAAAGAGAAGAAACGTTTCGAAGATTTAGCTGTCTTGGATAGACAACGATTCAATCGTGAAATGTGTGATTACGTGCCACCAGATGGTATGAAAAAGGGAAAGAAACGCAAGGGTCCTAAGGACCCCACAGTACCTGCACGAGCCTGGTCTGCTTTCTTTTTCTTTTGTGATGAATTCCGTTCAAAAGTCAGAGAAAGTAATCCGGATTGGAAAGTCGCAGATATTGCTAAAGAGCTTGGACGTCAATGGGAAACTTGTCAAGATAAAGCAAAGTATGAACTGTTAGCTCAAAAAGATAAACAGCGTTATGAAGAGGACATGATAAAATATCGGGCGGGGACTTATGTTCCTAGAGAGAAGAAACTTGCAGGTGCTGTG TCAAACTCTGCATCTATCAGGACTCCTGAAACTCAGAATCCAGATTGCACTACAG TTACCAGCGCTGGAGGTGATGAAAACGGTGCGGAGTTAGAAGATGAAGATGATGGGGAACCTGATGAGGGTGAGGAAGAGTGAAGATCAGAACATTAGGTTTTTGATAACTCAGTTGTACAGGTCTATTGCATTTATAATGTTCTAACCCCCTTCTAATTCTTACCTAAACTNTGTATACATTGGTTNTATTGGTATTTTTGTATCATTCATAAATTGAATGTACATCATTCATACTTTGACTTTCGTTTATTGGGTGATGTAAGAATCTGAT AACATATATATATTATTG TCACTATTGAGTG TACTGGATTG AA TTAT ATAG ACA ]
[-] EMBL CD075717 [ TATTGCTAAAGAGCTTGGACGTCAATGGGAAACTTGTCAAGATAAAGCAAAGTATGAACTGTTAGCTCAAAAAGATAAACAGCGTTATGAAGAGGACATGATAAAATATCGGGCGGGGACTTATGTTCCTAGAGAGAAGAAACTTGCAGGTGCTGTG TCAAACTCTGCATCTATCAGGACTCCTGAAACTCAGAATCCAGATTGCACTACAG TTACCAGCGCTGGAGGTGATGAAAACGGTGCGGAGTTAGAAGATGAAGATGATGGGGAACCTGATGAGGGTGAGGAAGAGTGAAGATCAGAACATTAGGTTTTTGATAACTCAGTTGTACAGGTCTATTGCATTTATAATGTTCTAACCCCCTTCTAATTCTTACCTAAACTTTGTATACATTGGTTTTATTGTTATTTTTGTATCATTCATAAATTGAATGTACATCATTCATACTTTGACTTTCGTTTATTGTGTGATGTAAGATTCTGATAAACATATATATATTATTGTTCACTATTGAGTGTTACTGTATTGTAATTTATAATAGTACAGTT]
[-] EMBL CD140998 [ AAAGTATGAACTGTTAGCTCAAAAAGATAAACAGCGTTATGAAGAGGACATGATAAAATATCGGGCGGGGACTTATGTTCCTAGAGAGAAGAAACTTGCAGGTGCTGTG TCAAACTCTGCATCTATCAGGACTCCTGAAACTCAGAATCCAGATTGCACTACAG TTACCAGCGCTGGAGGTGATGAAAACGGTGCGGAGTTAGAAGATGAAGATGATGGGGAACCTGA ]
[+] EMBL SM6981 [ acgagCAAAANGATANACAGCGTTATGATGAGGACATGATAAAATATCGGGCGGGGACTTATGTTCCTAGAGAGAAGAAANTTGCAGGTGCTGTGNTCAAACTCTGCATCTATCAGGACTCCTGAAACTCAGANTCCAGATNGCACTACAGCTNACCAGCGCTGGAGGTGATGAANACGGTGCGGAGTTAGAAGATGAAGATGATGGGGAACCT ]
consensusID : consensus_10504#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 706 fasta sequence
[AGCTCCCTTTGTTATTGTTTAGACTGATACCTTTGGAATATTAAATCATGAATAAGACTAAAGATAAGAATAAACCTAAAGGTCCTATGTCTGCTTATGCTTGTTTTGTGCAAGTTATTCGAGAAGAGCACAAAAAGAAACATCCTGGTGAACAAATTGTATTCAGTGATTTTTCAAAAAAGTGCGCTGAACGATGGAAGTTAATGACACCAAAAGAGAAGAAA-CGTTTCGAAGATTTAGCTGTCTTGGATAGAGAACGATTCAATCGTGAAATGTGTGATTA-CGTGCCACCAGATGGTATGAAAAAGGGAAAGAAACGCAAGGGTCCTAAGGACCCCACAGTACCTGCACGAGCCTGGTCTGCTTTCTTTTTCTTTTGTGATGAATTCCGTTCAAAAGTCAGAGAAAGTAATCCGGATTGGAAAGTCGCAGATATTGCTAAAGAGCTTGGACGTCAATGGGAAACTTGTCAAGATAAAGCAAAGTATGAACTGTTAGCTCAAAAAGATAAACAGCGTTATGAAGAGGACATGATAAAATATCGGGCGGGGA-CTTATGTTCCTAGAGAGAAGAAACTTGCAGGTGCTGTGTCAAACTCTGCATCTATCAGGACTCCTGAAACTCAGAATCCAGATTGCACTACAGTTACCAGCGCTGGAGGTGATGAAAACGGTGCGGAGTTAGAAGATGAAGATGATGGGGAACC]
[+] EMBL CD120211 [AGCTCCCTTTGTTATTGTTTAGACTGATACCTTTGGAATATTAAATCATGAATAAGACTAAAGATAAGAATAAACCTAAAGGTCCTATGTCTGCTTATGCTTGTTTTGTGCAAGTTATTCGAGAAGAGCACAAAAAGAAACATCCTGGTGAACAAATTGTATTCAGTGATTTTTCAAAAAAGTGCGCTGAACGATGGAAGTTAATGACACCAAAAGAGAAGAAA CGTTTCGAAGATTTAGCTGTCTTGGATAGAGAACGATT ]
[+] EMBL CD124399 [ ACAAAAAG AACATCCTGGTGAACAAATTGTATTCAGTGATTTTTCAAAAAAGTGCGCTGAACGATGGAAGTTAATGACACCAAAAGAGAAGAAA CGTTTCGAAGATTTAGCTGTCTTGGATAGAGAACGATTCAATCGTGAAATGTGTGATTA CGTGCCACCAGATGGTATGAAAAAGGGAAAGAAACGCAAGGGTCCTAAGGACCCCACAGTACCTGCACGGGCCTGGTCTGCTTTCTTTTTCTTTTGTGATGAATTCCGTTCAAAAGTCAGAGAAAGTAATCCGGATTGGAAAGTCGCAGATATTGCTAAAGAGCTTGGACGTCAATGGGAAACTTGTCAAGATAAAGCAAAGTATGAACTGTTAGCTCAAAAAGATAAACAGCGTTATGAAGAGGACATGATAAAATATCGGGCGGGGA CTTATGTTCCTAGAGAGAAGAAACTTGCAGGTGCTGTGTCAAACTCTGCATCTATCAGGACTCCTGAAGCTCAGAATCCAGATTGCACTACAGTTACCAGCGCTGGAGGTGATGAAAACGGTGCGGAGTTAGAAGATGAAGATGATGGGGAACC]
[-] EMBL CD155024 [ GGTGAACAAATTGTATTCAGTGATTTTTCAAAAAAGTGCGCTGAACGATGGAAGTTAATGACACCAAAAGAGAAGAAA CGTTTCGAAGATTTAGCTGTCTTGGATAGAGAACGATTCAATCGTGAAATGTGTGATTA CGTGCCACCAGATGGTATGAAAAAGGGAAAGAAACGCAAGGGTCCTAAGGACCCCACAGTACCTGCACGAGCCTGGTCTGCTTTCTTTTTCTTTTGTGATGAATTCCGTTCAAAAGTCAGAGAAAGTAATCCGGATTGGAAAGTCGCAGATATT ]
[+] EMBL CD152396 [ CGCTGAACGATGGAAGTTAATGACACCAAAAGAGAAGAAA CGTTTCGAAGATTTAGCTGTCTTGGATGGAGAACGATTCAATCGTGAAATGTGTGATTA CGTGCCACCAGATGGTATGAAAAAGGGAAAGAAACGCAAGGGTCCTAAGGACCCCACAGTACCTGCACGAGCCTGGTCTGCTTTCTTTTTCTTTTGTGATGAGTTCCGTTCAAAAGTCAGAGAAAGTAATCCGGATTGGAAAGTCGCAGATATTGCTAAAGAGCTTGGACGTCAATGGGAAACTTGTCAAGATAAAGCAAAGTATGAACTGTTAGCTCAAAAAGATAAACAGCGTTATGAAGAGGACATGATAAAATATCGGGCGGGGA CTTATGTTCCTAGAGAGAAGAAACTTGCAGGTGCTGTGTCAAACTCTGCATCTATCAGGACTCCTGAAACTCAGAATCCAGATTGCACTACGGT ]
[+] EMBL BF936381 [ ATGACACCAAAAGAAAAGAAACCGTTTCGAAGATTTAGCTGTCTTGGATAGAGAACGATTCAATCGTGAAATGTGTGATTACCGTGCCACCAGATGGTATGAAAAAGGGAAAGAAACGCAAGGGTCCTAAGGACCCCACAGTACCTGCACGAGCCTGGTCTGCTTTCTTTTTCTTTTGTGATGAATTCCGTTCAAAAGTCAGAGAAAGTAATCCGGATTGGAAAGTCGCAGATATTGCTAAAGAGCTTGGACGTCAATGGGAAACTTGTCAAGATAAAGCAAAGTATGAACTGTTAGCTCAAAAAGATAAACAGCGTTATGAAGAGGACATGATAAAATATCGGGCGGGGACCTTAT ]
[+] EMBL CD134166 [ GACACCAAAAGAGAAGAAA CGTTTCGAAGATTTAGCTGTCTTGGATAGGGAACGATTCAATCGTGAAATGTGTGATTA CGTGCCACCAGATGGTATGAAAAAGGGAAAGAAACGCAAGGGTCCTAAGGACCCCACAGTACCTGCACGAGCCTGGTCTGCTTTCTTTTTCTTTTGTGATGAATTCCGTTCAAAAGTCAGAGAAAGTAATCCGGATTGGAAAGTCGCAGATATTGCTAAAGAGCTTGGACGTCAATGGGAAACTTGTCAAGATAAAGCAAAGTATGAACTGTTAGCTCAAAAAGATAAACAGCGTTATGAAGAGGACATGATAAAATATCGGGCGGGGA CTTATGTTCCTAGAGAGAAGAAACTTGCAGGTGCTGTGTCAAACTCTGCATCTATCAGGACTCCTGAAACTCAGAATCCAGATTGCACTACAGTTA ]
[-] EMBL CD188951 [ AAGAGAAGAAA CGTTTCGAAGATTTAGCTGTCTTGGATAGAGAACGATTCAATCGTGAAATGTGTGATTA CGTGCCACCAGATGGTATGAAAAAGGGAAAGAAACGCAAGGGTCCTAAGGACCCCACAGTACCTGCACGAGCCTGGTCTGCTTTCTTTTTCTTTTGTGATGAATTCCGTTCAAAAGTCAGAGAAAGTAATCCGGATTGGAAAGTCGCAGATATTGCTAAAGAGCTTGGACGTCAATGGGAAACTTGTCAAGATAAAGCAAAGTATGAACTGTTAGCTCAAAAAGATAAACAGCGTTATGAAGAGGACATGATAAAATATCGGGCGAGGA CTTATGTTCCTAGAGAGAAGAAACTTGCAGGTGCTGTGTCAAACT ]
[+] EMBL CD134152 [ GAAGAAA CGTTTCGAAGATTTAGCTGTCTTGGATAGAGAACGATTCAATCGTGAAATGTGTGATTA CGTGCCACCAGATGGTATGAAAAAGGGAAAGAAACGCAAGGGTCCTAAGGACCCCACAGTACCTGCACGAGCCTGGTCTGCTTTCTTTTTCTTTTGTGATGAATTCCGTTCAAAAGTCAGAGAAAGTAATCCGGATTGGAAAGTCGCAGATATTGCTAAAGAGCTTGGACGTCAATGGGAAACTTGTCAAGATAAAGCAAAGTATGAACTGTTAGCTCAAAAAGATAAACAGCGTTATGAAGAGGACATGATAAAATATCGGGCGGGGA CTTATGTTCCTAGAGAGAAGAAACTTGCAGGTGCTGTGTCAAACTCTGCATCTATCAGGACTCCTGAAACTCAGAATCCAGATTGCACTACAGTT ]
[-] EMBL CD146191 [ GATAGAGAACGATTCAATCGTGAAATGTGTGATTA CGTGCCACCAGATGGTATGAAAAAGGGAAAGAAACGCAAGGGTCCTAAGGACCCCACAGTACCTGCACGAGCCTGGTCTGCTTTCTTTTTCTTTTGTGATGAATTCCGTTCAAAAGTCAGAGAAAGTAATCCGGATTGGAAAGTCGCAGATATTGCTAAAGAGCTTGGACGTCAATGGGAAACTTGTCAAGATAAAGCAAAGTATGAACTGTTAGCTCAAAAAGATAAACAGCGTTATGAAGAGGACATGATAAA ]
[+] EMBL CD181134 [ AAAAGGGAAAGAAACGCAAGGGTCCTAAGGACCCCACAGTACCTGCACGAGCCTGGTCTGCTTTCTTTTTCTTTTGTGATGAATTCCGTTCAAAAGTCAGAGAAAGTAATCCGGATTGGAAAGTCGCAGATATTGCTAAAGAGCTTGGACGTCAATGGGAAACTTGTCAAGATAAAGCAAAGTATGAACTGTTAGCTCAAAAAGATAAACAGCGTTATGAAGAGGACATGATAAAATATCGGGCGGGGA CTTATGTTCCTAGAGAGAAGAAACTTGCAGGTGCTGTGTCAAACTCTGCATCTATCAGGACTCCTGAAACTCAGAATCCAGATTGCACTACA ]
[-] EMBL CD067660 [ AAAAGGGAAAGTAACGCAAGGGTCCTAAGAACCCCACAGTACCTGCACGAGCTTGGTCTGCTTTCTTTTTCTTTTGCGATGAATTCCGTTCAAAAGTCAGAGAAAGTAATCCGGATTGGAAAGTCGCAGATATTGGTAAAGAGCTTGGACGTCAATGGGAc ]
[-] EMBL CD132496 [ AATTCCGTTCAAAAGTCAGAGAAAGTAATCCGGATTGGAAAGTCGCAGATATTGCTTAAGAGCTTGGACGTCAATGGGAAACTTGTCAAGATAAAGCAAAGTATGAACTGTTAGCTCAAAAAG ]
[+] EMBL CD146025 [ AACTTGTCAAGATAAAGCAAAGTATGAACCGTTAGCTCAAAAAGATAAACAGCGTTATGAAGAGGACATGATAAAATATCGGGCGGGGA CTTATGTTCCTAGAGAGAAGAAACTTGCAGGTGCTGTGTCAAACTCTGCATCTATCAGGACTCCTGAAACTCAGAATCCAGATTGCACT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10504#0 ------------------------------------------------------------
consensus_10504#1 AGCTCCCTTTGTTATTGTTTAGACTGATACCTTTGGAATATTAAATCATGAATAAGACTA 60
consensus_10504#0 ------------------------------------------------------------
consensus_10504#1 AAGATAAGAATAAACCTAAAGGTCCTATGTCTGCTTATGCTTGTTTTGTGCAAGTTATTC 120
consensus_10504#0 ------------------------------------------------------------
consensus_10504#1 GAGAAGAGCACAAAAAGAAACATCCTGGTGAACAAATTGTATTCAGTGATTTTTCAAAAA 180
consensus_10504#0 ------------GTTACGAGGAACCGACACCAAAAGAGAAGAAACGTTTCGAAGATTTAG 48
consensus_10504#1 AGTGCGCTGAACGATGGAAGTTAATGACACCAAAAGAGAAGAAACGTTTCGAAGATTTAG 240
* * ** * ***********************************
consensus_10504#0 CTGTCTTGGATAGACAACGATTCAATCGTGAAATGTGTGATTACGTGCCACCAGATGGTA 108
consensus_10504#1 CTGTCTTGGATAGAGAACGATTCAATCGTGAAATGTGTGATTACGTGCCACCAGATGGTA 300
************** *********************************************
consensus_10504#0 TGAAAAAGGGAAAGAAACGCAAGGGTCCTAAGGACCCCACAGTACCTGCACGAGCCTGGT 168
consensus_10504#1 TGAAAAAGGGAAAGAAACGCAAGGGTCCTAAGGACCCCACAGTACCTGCACGAGCCTGGT 360
************************************************************
consensus_10504#0 CTGCTTTCTTTTTCTTTTGTGATGAATTCCGTTCAAAAGTCAGAGAAAGTAATCCGGATT 228
consensus_10504#1 CTGCTTTCTTTTTCTTTTGTGATGAATTCCGTTCAAAAGTCAGAGAAAGTAATCCGGATT 420
************************************************************
consensus_10504#0 GGAAAGTCGCAGATATTGCTAAAGAGCTTGGACGTCAATGGGAAACTTGTCAAGATAAAG 288
consensus_10504#1 GGAAAGTCGCAGATATTGCTAAAGAGCTTGGACGTCAATGGGAAACTTGTCAAGATAAAG 480
************************************************************
consensus_10504#0 CAAAGTATGAACTGTTAGCTCAAAAAGATAAACAGCGTTATGAAGAGGACATGATAAAAT 348
consensus_10504#1 CAAAGTATGAACTGTTAGCTCAAAAAGATAAACAGCGTTATGAAGAGGACATGATAAAAT 540
************************************************************
consensus_10504#0 ATCGGGCGGGGACTTATGTTCCTAGAGAGAAGAAACTTGCAGGTGCTGTGTCAAACTCTG 408
consensus_10504#1 ATCGGGCGGGGACTTATGTTCCTAGAGAGAAGAAACTTGCAGGTGCTGTGTCAAACTCTG 600
************************************************************
consensus_10504#0 CATCTATCAGGACTCCTGAAACTCAGAATCCAGATTGCACTACAGTTACCAGCGCTGGAG 468
consensus_10504#1 CATCTATCAGGACTCCTGAAACTCAGAATCCAGATTGCACTACAGTTACCAGCGCTGGAG 660
************************************************************
consensus_10504#0 GTGATGAAAACGGTGCGGAGTTAGAAGATGAAGATGATGGGGAACCTGATGAGGGTGAGG 528
consensus_10504#1 GTGATGAAAACGGTGCGGAGTTAGAAGATGAAGATGATGGGGAACC-------------- 706
**********************************************
consensus_10504#0 AAGAGTGAAGATCAGAACATTAGGTTTTTGATAACTCAGTTGTACAGGTCTATTGCATTT 588
consensus_10504#1 ------------------------------------------------------------
consensus_10504#0 ATAATGTTCTAACCCCCTTCTAATTCTTACCTAAACTNTGTATACATTGGTTNTATTGGT 648
consensus_10504#1 ------------------------------------------------------------
consensus_10504#0 ATTTTTGTATCATTCATAAATTGAATGTACATCATTCATACTTTGACTTTCGTTTATTGG 708
consensus_10504#1 ------------------------------------------------------------
consensus_10504#0 GTGATGTAAGAATCTGATAACATATATATATTATTGTCACTATTGAGTGTACTGGATTGA 768
consensus_10504#1 ------------------------------------------------------------
consensus_10504#0 ATTATATAGACAGTT 783
consensus_10504#1 ---------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||